BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14965.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890815 jgi|Araly1|890815|Al_scaffold_0007_2801 1147 0.0
> Ahg890815 jgi|Araly1|890815|Al_scaffold_0007_2801
Length=738
Score = 1147 bits (621), Expect = 0.0
Identities = 700/739 (95%), Gaps = 2/739 (0%)
Strand=Plus/Plus
Query 113 ATGATTCCGGCGAGGAGGTTTCTCTTATCTCCATTTGTCGGCGTCACGTTTATCGTCGTT 172
||||||||||||||||| ||||| |||||||| || || ||||||||||| |||| ||||
Sbjct 1 ATGATTCCGGCGAGGAGTTTTCTGTTATCTCCGTTCGTTGGCGTCACGTTGATCGCCGTT 60
Query 173 CTCGTCTCTCTCTACTTCAGATCTTCCTTCAAGTCTCCACAACACC-AATATCAAAAGAG 231
|||||| || ||||||||||| ||||| |||||||||||||||||| ||| |||||||||
Sbjct 61 CTCGTCGCTTTCTACTTCAGAACTTCCCTCAAGTCTCCACAACACCAAAT-TCAAAAGAG 119
Query 232 GTTATTTTCTGCTGAAGAATTGGCATTGTATAATGGTACTGATGAAACATTACCTATACT 291
||| || ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||
Sbjct 120 GTTGTTCTCTGCTGAAGAATTGGCTTTGTACAATGGCACTGATGCAACATTACCTATACT 179
Query 292 CTTAGGGATTCTTGGATCTGTGTTCGATGTGACGAAAGGAAAATTTCATTACGGTAGTGG 351
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 180 CTTAGGGATTCTTGGATCTGTGTTTGATGTGACGAAAGGAAAATCTCATTACGGTAGTGG 239
Query 352 AGGAGGGTACAACCATTTTGCTGGAAGAGACGCTTCTCGTGCATTTGTTTCTGGCAACTT 411
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 AGGAGGTTACAATCATTTTGCTGGAAGAGACGCTTCTCGTGCATTTGTTTCTGGGAACTT 299
Query 412 TACAGGAGATGGACTTACAGATTCGTTACAAGGGTTATCTAGCAGTGAGGTGAAGAGCAT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TACAGGAGATGGACTTACAGATTCGTTACAAGGGTTATCTAGCAGTGAGGTGAAGAGCAT 359
Query 472 TGTTGACTGGCGAGGTTTCTACTCCAGGACCTACACTCCTGTTGGGAAGCTTGTTGGGCG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTTGACTGGCGAGGTTTCTACTCCAGGACCTACACTCCTGTTGGGAAGCTTGTTGGGCG 419
Query 532 GTACTACGATAGCCAAGGGAATCCAACTAAACACCTTAAAGGAGCTGAAGCAAAAGCCTC 591
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GTTCTACGATAGCCAAGGGAATCCAACTAAACACCTGAAAGGAGCTGAAGCAAAAGCCTC 479
Query 592 CAGAGGTGCACAACTCATGGAGAAACAGAAGACTGAAGAAGCCAAGCAATCGAATTGCAA 651
|||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||
Sbjct 480 CAGAGGTGCACAACTCATGGAGAAACAGAAGACTGAGGAAGCCAAGCTACCGAGTTGCAA 539
Query 652 CTCACGATGGAGTCAAGATGAAGGTGGAGAGGTTTGGTGTGATGTTGGAGTGCCAAGACT 711
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 CTCACGATGGAGTCAAGATGAAGGTGGAGAGGTTTGGTGTGATGTTGGAGTACCAAGACT 599
Query 712 GGTACAAAGACCTTTGGAGATAGCAATAACTGGCTCGATGAGCAAACGCTGTGCTTGCTT 771
|||||| ||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct 600 GGTACAGAGACCTTTGGAGATAGCAATAACAGGTTCAATGAGCAAACGTTGCGCTTGCTT 659
Query 772 TGAGGAAGACCAACTTGATCAGTCTGGCTTGGAGATCTATAAAGACTGTGAACCTCTTGC 831
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 660 TGAGGAAGACCAACTTGATCAGTCTGGCTTGGAGATCTATAAAGACTGTGAGCCTCATGC 719
Query 832 CAAGACTTGCAGGGTTTGA 850
|||||||||||||||||||
Sbjct 720 CAAGACTTGCAGGGTTTGA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5