BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15110.1 Length=1954 Score E Sequences producing significant alignments: (Bits) Value Ahg493377 jgi|Araly1|493377|fgenesh2_kg.7__2810__AT4G15110.1 2870 0.0 > Ahg493377 jgi|Araly1|493377|fgenesh2_kg.7__2810__AT4G15110.1 Length=1874 Score = 2870 bits (1554), Expect = 0.0 Identities = 1785/1892 (94%), Gaps = 34/1892 (2%) Strand=Plus/Plus Query 46 TCTCTTTTCATTTGAAGATGG-T--AGCAGCCATGGCTTTTCCTGCCGCTGCTACTTATC 102 ||| ||||||||||||||||| | |||| |||||||||||||| |||||||||||||| Sbjct 1 TCTTTTTTCATTTGAAGATGGTTGCAGCAACCATGGCTTTTCCTTCCGCTGCTACTTATT 60 Query 103 CCACCCATTTCCAAGGCGGCGCTCTTCATCTGGGTAGGACCGATCATTGCCTCTTCGG-- 160 ||||||||||||| ||||||| |||||||| | |||||| |||||||| || Sbjct 61 CCACCCATTTCCATGGCGGCGGTCTTCATC-------G--CGATCACTGCCTCTTGGGCT 111 Query 161 T-TTCTACCCTCAAACCATTTCCTCTGTGAATTCTCGGAGAGCTTCTGTTTCCATCAAGT 219 | |||||||| |||||| ||| || ||||||||| |||||||||||||||||| Sbjct 112 TCTTCTACCCACAAACCCTTT--TC-------TCTCGGAGATCTTCTGTTTCCATCAAGT 162 Query 220 GCCAATCTACGGAGCCAAAGACGAATGGTAACATATTGGACAATGCGAGCAACCTTTTGA 279 ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| | Sbjct 163 GCCAATCTATGGAGCCAAAGACGAGTGGTAACATATTGGACAATGCAAGCAACCTTTTAA 222 Query 280 CAAATTTTTTAAGTGGTGGAAGTTTGGGGTCAATGCCTACTGCTGAAGGCTCTGTCTCTG 339 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 223 CGAATTTTTTAAGTGGTGGAAGTTTGGGGTCAATGCCTACTGCTGAAGGCGCTGTCTCTG 282 Query 340 ATTTGTTTGGAAAGCCTCTCTTTTTATCTCTTTACGACTGGTTCTTGGAGCATGGAGGAA 399 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 ATTTGTTTGGAAAGCCTCTCTTTTTATCTCTTTACGACTGGTTCTTGGAGCATGGAGGAG 342 Query 400 TTTATAAACTTGCGTTTGGTCCAAAAGCCTTTGTTGTCATCTCAGATCCCATTATTGCAA 459 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 343 TGTATAAACTTGCGTTTGGTCCAAAAGCCTTTGTTGTCATCTCAGATCCCATTGTTGCAA 402 Query 460 GGCATGTCCTCCGGGAAAATGCTTTTTCTTATGACAAGGGAGTTCTTGCTGAGATCTTAG 519 |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 403 GGCATGTCCTTCGGGAAAACGCGTTTTCTTATGACAAGGGAGTTCTTGCTGAGATCTTAG 462 Query 520 AGCCGATTATGGGAAAAGGGTTAATACCGGCTGATCTAGATACGTGGAAGTTAAGAAGAA 579 |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 463 AGCCTATTATGGGAAAAGGGTTAATACCGGCTGACCTTGATACCTGGAAGTTAAGAAGAA 522 Query 580 GAGCTATCACTCCCGCATTCCATAAATTGTATCTAGAGGCCATGGTCAAAGTATTTAGTG 639 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 523 GAGCTATCACTCCCGCATTTCATAAATTGTATCTAGAGGCCATGGTCAAAGTATTTAGTG 582 Query 640 ACTGTTCGGAGAAAATGATATTGAAATCTGAGAAACTCATAAGGGAGAAAGAAACTTCAA 699 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 583 ACTGTTCGGAGAAAATGATTTTGAAATCTGAGAAACTCTTAAGGGAGAAAGAAACTTCAA 642 Query 700 GCGGGGAGGACACCATTGAGTTGGATCTGGAAGCAGAATTCTCGAGTCTGGCTCTTGATA 759 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 643 GCGGGGAGGACACCATTGAGTTGGATCTGGAAGCAGAATTCTCGAGTCTAGCTCTTGATA 702 Query 760 TTATAGGTCTTAGCGTGTTCAACTACGATTTTGGCTCTGTCACAAAAGAGTCCCCTGTGA 819 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 703 TTATAGGTCTTAGCGTGTTCAACTACGACTTTGGCTCTGTCACAAAGGAGTCCCCTGTGA 762 Query 820 TCAAGGCAGTTTATGGAACTCTTTTCGAGGCAGAGCATCGGTCTACTTTCTACTTCCCTT 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 TCAAGGCAGTTTATGGAACTCTTTTCGAGGCAGAGCATCGGTCTACTTTCTACTTCCCTT 822 Query 880 ATTGGAACTTTCCTCCAGCTAGATGGATAGTTCCGAGGCAACGAAAGTTCCAAAGCGATC 939 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 823 ATTGGAAATTTCCTCCAGCCAGATGGATAGTTCCGAGGCAACGAAAGTTCCAAAGCGATC 882 Query 940 TGAAGATTATAAACGATTGCCTTGATGGCCTCATTCAAAATGCTAAAGAGACAAGACAGG 999 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 TGAAGATTATAAACGACTGCCTTGATGGCCTCATTCAAAATGCTAAAGAGACAAGACAGG 942 Query 1000 AAACAGATGTTGAGAAGCTCCAGGAAAGGGACTACACTAATCTCAAGGATGCAAGTCTTT 1059 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 943 AAACAGATGTGGAGAAGCTCCAGCAAAGGGACTACACTAATCTCAAGGATGCAAGTCTTT 1002 Query 1060 TGCGGTTCTTAGTCGATATGCGCGGTGTTGACATTGATGACCGGCAGCTGAGGGATGACT 1119 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1003 TGCGGTTCTTAGTCGATATGCGTGGTGTTGATATTGATGACCGGCAGCTGAGGGATGACT 1062 Query 1120 TGATGACTATGCTAATTGCTGGTCATGAGACAACAGCAGCAGTACTTACTTGGGCTGTTT 1179 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1063 TGATGACTATGCTAATTGCTGGTCATGAGACAACAGCAGCAGTTCTTACTTGGGCTGTTT 1122 Query 1180 TCCTTCTGTCACAAAATCCTGAAAAAATTAGGAAAGCTCAAGCTGAGATTGATGCTGTGC 1239 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1123 TCCTTTTGTCACAAAATCCTGAAAAAATTAGGAAAGCTCAAGCTGAGATTGATGCTGTGC 1182 Query 1240 TTGGTCAAGGTCCACCCACTTATGAATCAATGAAAAAGCTCGAGTACATACGACTGATCG 1299 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1183 TTGGTCACGGTCCACCCACTTATGAATCAATGAAAAACCTCGAGTACATACGACTGATCG 1242 Query 1300 TTGTAGAAGTCCTTCGTCTCTTTCCTCAGCCACCTTTGCTCATCAGACGCACTCTCAAAC 1359 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1243 TTGTAGAAGTCCTTCGTCTCTATCCTCAGCCACCTTTGCTCATCAGACGCACTCTCAAAC 1302 Query 1360 CAGAAACATTACCCGGAGGACACAAAGGGGAAAAAGAAGGTCATAAAGTTCCAAAAGGGA 1419 ||||||| |||||||| ||| ||||||| |||||||||||||||||||| |||||||||| Sbjct 1303 CAGAAACCTTACCCGGGGGATACAAAGGTGAAAAAGAAGGTCATAAAGTCCCAAAAGGGA 1362 Query 1420 CTGATATCTTCATTTCTGTGTATAATCTCCATAGATCTCCATACTTTTGGGATAATCCCC 1479 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1363 CTGATATCTTTATTTCTGTGTATAATCTCCATAGATCTCCATACTTTTGGGATAATCCCC 1422 Query 1480 ACGATTTTGAGCCTGAGAGGTTTTTAAGAACAAAGGAGAGCAATGGAATTGAAGGATGGG 1539 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1423 ACGATTTTGAGCCGGAGAGGTTTTTAAGAACAAAGGAGAGCAATGGAATCGAAGGATGGG 1482 Query 1540 CTGGCTTTGATCCATCTCGTAGCCCCGGGGCACTATATCCGAATGAGATAATAGCAGACT 1599 |||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||| Sbjct 1483 CTGGCTTTGATCCATCTCGTAGCCTTGGGGCACTATATCCTAATGAGATCATATCAGACT 1542 Query 1600 TTGCATTCTTACCATTTGGTGGAGGACCAAGAAAATGCATTGGAGACCAGTTTGCACTAA 1659 |||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||| Sbjct 1543 TTGCGTTCTTACCATTTGGTGGAGGGCCAAGAAAATGCGTTGGAGACCAGTTTGCCCTAA 1602 Query 1660 TGGAATCGACCGTCGCACTAGCTATGTTGTTTCAGAAATTCGATGTGGAGCTGCGTGGAA 1719 ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1603 TGGAATCAACCGTCGCACTAGCTATGCTGTTACAGAAATTCGATGTGGAGCTGCGTGGAT 1662 Query 1720 CGCCAGAATCTGTTGAACTCGTGAGCGGCGCAACGATTCATGCCAAAAATGGGATGTGGT 1779 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1663 CGCCGGAATCCGTTGAACTCGTGAGCGGCGCAACGATTCATGCCAAAAATGGGATGTGGT 1722 Query 1780 GCAAACTAAAGAGAAGATCAAAGTGAAATT-TATGGATAGGCAAAAAGACTCAATTTTAA 1838 |||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||| Sbjct 1723 GCAAACTAAAGAGAAGATCAAAGTGAAAATCTAAGGAGAGGCAAAAAGACTCAATTTTAA 1782 Query 1839 CTTGAAGGAAGCT--GAGTGTAAATGAGAGATGATAT-GCTTATGATTCACTAAAC--G- 1892 ||||||||||||| |||||||||||||| | || || |||||||||||||||||| | Sbjct 1783 CTTGAAGGAAGCTCTGAGTGTAAATGAGAAAGGA-ATTGCTTATGATTCACTAAACTTGC 1841 Query 1893 T-ACATT-CTTGAGATTTTGAAAATGCAAAAA 1922 | ||||| |||||||||||||||||||||||| Sbjct 1842 TTACATTTCTTGAGATTTTGAAAATGCAAAAA 1873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73437992360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5