BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15210.1 Length=2006 Score E Sequences producing significant alignments: (Bits) Value Ahg493370 jgi|Araly1|493370|fgenesh2_kg.7__2803__AT4G15210.1 2706 0.0 > Ahg493370 jgi|Araly1|493370|fgenesh2_kg.7__2803__AT4G15210.1 Length=1886 Score = 2706 bits (1465), Expect = 0.0 Identities = 1781/1926 (92%), Gaps = 52/1926 (3%) Strand=Plus/Plus Query 2 AGACATGTGAGCTTCATCTACTACT-CATATTGCTTATATTTTCCTACAACACTCTCTCA 60 |||||||||||||||| |||||||| | |||||||||||||||||||||||| || Sbjct 1 AGACATGTGAGCTTCAACTACTACTACTTATTGCTTATATTTTCCTACAACA----CT-- 54 Query 61 ACaaaaaaacaaaaaaaaaaGACGTTCTTTCTTTGTTTGTATTTAGAAGAAAAATGGCTA 120 | |||| ||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct 55 -C---AAAA-AAAAAAAAACCA-GTTCTTTCTTTGTTTGTATTTAGAAG-AAAATGGCTG 107 Query 121 CCAATTACAACGAGAAGCTTCTTCTTAATTATGTTCCCGTTTACGTTATGCTTCCGTTGG 180 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 108 CCAATTACAACGAAAAGCTTCTTCTTAACTATGTTCCCGTTTACGTTATGCTTCCGCTGG 167 Query 181 GAGTTGTGAATGTGGAAAATGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTTAAAC 240 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | Sbjct 168 GAGTTGTGAATGTGGAAAACGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTCAAGC 227 Query 241 GTCTCAAAGAAGAAGCTGGCGTTGATGGCGTTATGGTCGATGTTTGGTGGGGAATCATAG 300 |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct 228 GTCTCAAAGAAGAAGCTGGCGTCGACGGCGTGATGGTCGATGTTTGGTGGGGAATCATAG 287 Query 301 AATCCAAAGGTCCCAAACAATATGATTGGACGGCCTACAAAACGCTGTTCCAGCTGATCG 360 |||||||||||||||||||||| |||||||| |||||||||||||| |||||| | |||| Sbjct 288 AATCCAAAGGTCCCAAACAATACGATTGGACCGCCTACAAAACGCTATTCCAGTTAATCG 347 Query 361 CACGTTTGGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGTGGAAACGTTG 420 | ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 348 CGCGTTTAGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGCGGGAACGTCG 407 Query 421 GCGACATCGTTACTATCCCGATCCCACAATGGGTTCGCGATGTCGGTGACAATGATCCCG 480 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 408 GCGACATCGTTACTATCCCGATCCCACAATGGGTGCGCGATGTCGGCGACAACGATCCCG 467 Query 481 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCAATCGGTGTTG 540 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 468 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCCATCGGTGTTG 527 Query 541 ATAATCTTCCCCTATTTGCCGGAAGAACCGCTGTTCAGTTGTACAGTGATTACATGAGTA 600 |||| |||||||| || |||||||||||||| |||||| | ||||||||||||||||||| Sbjct 528 ATAACCTTCCCCTCTTCGCCGGAAGAACCGCGGTTCAGATATACAGTGATTACATGAGTA 587 Query 601 GCTTCAAAGAAAACATGGCGGATTTGATAGAAGCTGGGGTGATTGTTGACATCGAAGTCG 660 ||||||||||||||||| |||||||||||||||| || | |||||||||||| ||||||| Sbjct 588 GCTTCAAAGAAAACATGACGGATTTGATAGAAGCCGGCGCGATTGTTGACATTGAAGTCG 647 Query 661 GACTTGG-CCCGGCCGGTGAACTACGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTG 719 ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 648 GACTTGGTCCC-GCCGGTGAACTTCGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTA 706 Query 720 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 766 Query 780 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGACTTGCCAGAGGACGCCGGAGAATACAAT 839 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 767 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGATTTGCCGGAGGACGCCGGAGAATACAAT 826 Query 840 GACAAGCCGGAGGAGACTGGATTTTTCAAGAAGGA-TGGGACTTATGTCTCGGAGAAGGG 898 ||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||| Sbjct 827 GACAAGCCGGAGGAGACTGGATTTTTCAAGA-GAAATGGGACTTATGTCTCGGAGGAGGG 885 Query 899 GAAGTTTTTCATGACATGGTACTCGAACAAACTAATTTTTCATGGAGATCAGATCTTAGG 958 |||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 886 GAAGTTTTTCTTGACATGGTACTCGAACAAACTCATCTTTCATGGAGATCAGATCATAGG 945 Query 959 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCTGGGAT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 946 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCGGGGAT 1005 Query 1019 TCACTGGTTGTACAACCACCACAGCCACGCTGCGGAGTTGACTGCTGGATATTACAACCT 1078 |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct 1006 TCACTGGTTGTACAACCACCACAGCCACGCGGCGGAGCTGACTGCTGGATATTATAACCT 1065 Query 1079 TTTCAAGAGAGATGGTTACCGTCCGATCGCCCGGATGCTCTCAAAACACTACGGCATTCT 1138 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1066 CTTCAAGAGAGATGGTTACCGTCCTATCGCTCGGATGCTCTCAAAACACTACGGCATTCT 1125 Query 1139 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACAGCTGAAGCCCTAAGTGCTCC 1198 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1126 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACCGCTGAAGCCCTAAGTGCTCC 1185 Query 1199 TCAAGAACTTGTTCAAGAGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1258 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 CCAAGAACTTGTTCAAGTGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1245 Query 1259 TGAGAACGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAGATTCTTCTTAACGCGAG 1318 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1246 TGAGAATGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAAATTCTTCTTAACGCGAG 1305 Query 1319 GCCTAACGGGGTTAACCCAAACGGTAAGCCGAAGCTTAGAATGTACGGATTTACTTACCT 1378 |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 1306 GCCTAACGGGGTTAACCCGAATGGTAAACCGAAGCTTAGAATGTACGGATTTACTTACCT 1365 Query 1379 TCGGTTATCCGATACTGTCTTTCAAGAAAACAACTTTGAGCTGTTTAAGAAGTTGGTGAG 1438 ||||||||| ||||| |||||||||||| |||||||| ||||||| |||||||||||||| Sbjct 1366 TCGGTTATCTGATACGGTCTTTCAAGAAGACAACTTTAAGCTGTTCAAGAAGTTGGTGAG 1425 Query 1439 GAAAATGCACGCTGATCAAGATTATT---GTGGAGACGCAGCGAAGTACGGGCATGAGAT 1495 ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1426 GAAAATGCATGCTGATCAAGATAATTACTGTGGAGACGCAGCGAAGTACGGGCATGAGAT 1485 Query 1496 TGTGCCGTTGAAAACGTCGAATTCGCAGCTGACGCTGGAGGATATCGCCGACGCGGCTCA 1555 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1486 TGTGCCGCTGAAAACGCCGAATTCGCAGCTGACGGTGGAGGATATCGCCGACGCGGCTCA 1545 Query 1556 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGATTTGAAGGTCGACGGTT-AGTTAT 1614 |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| Sbjct 1546 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGACATGAAGGTCGACGGTTGA-TTAT 1604 Query 1615 ATTTTATATGATCGATCGTCTAATCACaaagaaagtaagggaaagaatcaaggaagtaag 1674 |||| ||||||| |||||||||||||||||||||||||| ||| ||| | | | | | Sbjct 1605 ATTT-ATATGATTGATCGTCTAATCACAAAGAAAGTAAGAGAAGGAAAC--GT--G-A-G 1657 Query 1675 aataagaagataataaataaagagaataagaagaGGCATTTGCAACTTTAAGAGGTTAAA 1734 |||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||| Sbjct 1658 AATAAGAAGAGAATAAATAAAGAGAATAAGAAGAGGTATTTACAACTTTAAGGGGTTAAA 1717 Query 1735 ATTTCTTAAATGAGTCTGAGTTTCGTTGTGTGTTTTGGGTGTACCATAAGAAATAAAACG 1794 ||||| |||||| | || ||| || |||| ||| |||| ||||| ||||||||||||| Sbjct 1718 ATTTCGTAAATGT-T-TG-GTT--GT-GTGT-TTT-GGGT-TACCAGAAGAAATAAAACG 1768 Query 1795 TACGGGGTTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAAT-ATTAGTCTGCGTA 1853 | | ||||||||||||||||||||||||||||||||||||||| || | ||| ||| Sbjct 1769 T--GT--TTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAATTATG-G-CTGTGTA 1822 Query 1854 ATaaaaaaaaGTATGT--GTAGTAAAAA--TAAATAACTGTTGCCAGTAAAATAATGCAT 1909 |||||||||||| ||| || ||||||| ||||||| ||||| |||||||||||||||| Sbjct 1823 ATAAAAAAAAGT-TGTTTGT-GTAAAAAAATAAATAAGTGTTGTCAGTAAAATAATGCAT 1880 Query 1910 CATTGT 1915 |||||| Sbjct 1881 CATTGT 1886 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75418685100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5