BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15280.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946800 jgi|Araly1|946800|scaffold_703029.1 1463 0.0
Ahg333019 jgi|Araly1|333019|fgenesh1_pm.C_scaffold_9000047 917 0.0
Ahg493362 jgi|Araly1|493362|fgenesh2_kg.7__2795__AT4G15260.1 782 0.0
Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1 448 7e-125
> Ahg946800 jgi|Araly1|946800|scaffold_703029.1
Length=1442
Score = 1463 bits (792), Expect = 0.0
Identities = 1229/1435 (86%), Gaps = 50/1435 (3%)
Strand=Plus/Plus
Query 1 ATGAAGATTGAGCTTGTGTTCATACCTTTGCCGGGGATTGGTCATCTCAGGCCAACCGTG 60
|||||||| ||||| ||||||||||| |||||||| ||| |||||||| | ||| |||||
Sbjct 21 ATGAAGATCGAGCTCGTGTTCATACCGTTGCCGGGAATTAGTCATCTCCGACCAGCCGTG 80
Query 61 AAGCTAGCGAAGCAACTCATAG-GCAGCGAAAACCGTCTTTCGATCACCATAATCATCAT 119
||||| || ||||||||||| | | ||||| ||||||||||||||||| ||||||||||
Sbjct 81 AAGCTCGCAAAGCAACTCATTGAG-AGCGACGACCGTCTTTCGATCACCGTAATCATCAT 139
Query 120 CCCTTCAAGATTTGACGCCGGTGATGCATCCGCCTGTATCGCATCTCTCACCACGTTGTC 179
|||||||||||| || ||||||||||||||||||| ||||||| | ||| ||| |
Sbjct 140 CCCTTCAAGATTCGATGCCGGTGATGCATCCGCCTCTATCGCA-C-CTC-TCAC---G-- 191
Query 180 TCAAGATGATCGCCTCCATTACGAATCCATATCCGTCGCAAAACAACCACCAACCTCCGA 239
| | |||||||||| ||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 192 --ACG--GATCGCCTCCGTTACGAAGCCATCTCCGTCTCAAAACAACCACCAACCTCCGA 247
Query 240 -CCCGGATCCTGTTCCGGCTCAAGTGTACATAGAGAAACAAAAGACGAAAGTGAGAGATG 298
||| | | | |||||||||||| ||||| |||||||||||| | |||||||||||||
Sbjct 248 TCCC--A--CGGATCCGGCTCAAGTTTACATCGAGAAACAAAAGTCAAAAGTGAGAGATG 303
Query 299 CAGTCGCGGCGAGAATCGTCGATCCAACAAGAAAGCTCGCGGGATTCGTGGTGGACATGT 358
||||||| | |||||||| ||||||||| ||||||||| |||||||||||||| || |
Sbjct 304 CAGTCGC--C-AGAATCGTTGATCCAACACGAAAGCTCGTTGGATTCGTGGTGGATATAT 360
Query 359 TCTGTTCCTCGATGATCGATGTAGCTAACGAGTTTGGAGTTCCGTGTTATATGGTATACA 418
| |||||||||||||| |||||||||||||| || |||||||||||||||||| | ||||
Sbjct 361 TTTGTTCCTCGATGATTGATGTAGCTAACGAATTCGGAGTTCCGTGTTATATGATCTACA 420
Query 419 CATCGAACGCTACGTTTTTAGGAACCATGCTTCACGTTCAACAAATGTACGATCAAAAGA 478
|||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 421 CATCGAACGCTACGGTTCTAGGAATCATGCTTCACCTTCAACAAATGTACGATCAAAAGA 480
Query 479 AGTATGACGTCAGCGAGTTAGAAAACTCGGTCACCGAGTTGGAGTTTCCGTCTCTGACTC 538
||||||||||||| ||||| ||| | || |||| ||||||||||||||||||||||| ||
Sbjct 481 AGTATGACGTCAGTGAGTTGGAAGAGTCAGTCAACGAGTTGGAGTTTCCGTCTCTGAGTC 540
Query 539 GTCCTTATCCAGTGAAGTGTCTTCCTCATATCCTCACTTCAAAGGAGTGGTTACCTCTCT 598
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 541 GTCCTTATCCAGTGAAGTGTCTTCCTCATTTCCTCACTTCAAAGGAGTGGTTACTTCTCT 600
Query 599 CTCTAGCTCAAGCTAGGTGTTTCCGGAAGATGAAGGGTATTTTGGTAAATACAGTTGCTG 658
|||||| ||||| |||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 601 TTCTAGCACAAGCCAGGTATTTACGGAAGATGAAAGGTATTTTGGTAAATACAGTTGCTG 660
Query 659 AGCTTGAACCTCACGCTTTGAAAATGTTCAATATTAATGGTGACGATCTTCCTCAAGTTT 718
||||||||||| ||||||| |||||||| || |||| || ||||||||||||| ||
Sbjct 661 AGCTTGAACCTTACGCTTTAAAAATGTT---TAATAAT-GT--TGATCTTCCTCAAGCTT 714
Query 719 ATCCTGTTGGACCAGTGTTGCATCTCGAAAACGGCAATGACGATGATGAGAAGCAATCGG 778
|||| || ||||||||||||||| ||| | | |||||||| | |||||||| |
Sbjct 715 ATCCGGTAGGACCAGTGTTGCATTTCG---A---C---GACGATGA--A-AAGCAATCAG 762
Query 779 AAATTTTGCGGTGGCTCGACGAGCAACCGTCTAAATCTGTTGTGTTTCTCTGCTTTGGGA 838
| ||||||| ||||||||| ||||||||| | |||||||||||||||||||| ||||| |
Sbjct 763 AGATTTTGCAGTGGCTCGATGAGCAACCGCCGAAATCTGTTGTGTTTCTCTGTTTTGGAA 822
Query 839 GCTTGGGAGGTTTCACTGAAGAACAAACAAGAGAAACCGCTGTGGCCCTAGATAGAAGCG 898
|| ||||||||||||| || |||||| | ||||||| || | || || ||| | ||||
Sbjct 823 GCATGGGAGGTTTCACGGAGGAACAAGCTAGAGAAATGGCCATTGCGCTTGATCGTAGCG 882
Query 899 GTCAGCGGTTTCTTTGGTGTCTTCGTCACGCATCGCCAAATATAAAAACAGATCGTCCCA 958
|| | ||||||||||||| ||| |||| |||||||| ||||||| || || ||||| |
Sbjct 883 GTTATCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGACCGACCGTCCTA 942
Query 959 GAGATTACACGAATCTT-GAGGAGGTTTTACCGGAGGGGTTCTTGGAACGGACTTTGGAT 1017
|||||| |||| || || || || ||| | |||| ||||||| | || ||||| ||||||
Sbjct 943 GAGATTTCACGGAT-TTGGATGAAGTTCTCCCGGTGGGGTTCCTAGATCGGACATTGGAT 1001
Query 1018 AGAGGGAAAGTGATTGGATGGGCACCACAAGTGGCGGTACTAG-AGAAGCCGGCGATAGG 1076
|||||||| ||| | |||||||||||||||||||| || |||| | || |||||||||||
Sbjct 1002 AGAGGGAAGGTGGTGGGATGGGCACCACAAGTGGCAGTGCTAGCA-AAACCGGCGATAGG 1060
Query 1077 AGGGTTTGTCACTCACTGCGGTTGGAACTCTAT-TTTAGAGAGCTTGTGGTTCGGTGTTC 1135
||| ||||| ||||| || || |||||||| || || || |||||||||||||||||||
Sbjct 1061 AGGATTTGTTACTCATTGTGGGTGGAACTCGATGCTT-GAAAGCTTGTGGTTCGGTGTTC 1119
Query 1136 CAATGGTGACGTGGCCGCTATACGCGGAACAGAAGGTTAACGCGTTTGAGATGGTTGAGG 1195
| |||||||| |||||||| ||||| || |||||| | ||||||||||||||||| ||||
Sbjct 1120 CGATGGTGACATGGCCGCTCTACGCCGAGCAGAAGATAAACGCGTTTGAGATGGTGGAGG 1179
Query 1196 AGCTGGGTTTGGCGGTGGAGATACGGAAGTACTTAAAAGGAGATTTGTTCGCCGGAGAGA 1255
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1180 AGCTGGGATTGGCGGTGGAGATACGTAAGTACTTAAAAGGAGATTTGTTCGCCGGAGAGA 1239
Query 1256 TGGAGACGGTTACCGCGGAGGATATAGAGAGAGCCATTAGGCGTGTGATGGAGCAAGACA 1315
||||||||||||| || ||||||||||||||||| || ||||||||||||||||| || |
Sbjct 1240 TGGAGACGGTTACGGCCGAGGATATAGAGAGAGCTATCAGGCGTGTGATGGAGCAGGATA 1299
Query 1316 GTGACGTTAGGAACA-ACGTGAAAGAGATGGCGGAGAAGTGCCACT-TCGCGTTAATGGA 1373
|||| || ||||| | | ||||| || ||||| |||| ||| || | | |||||||||||
Sbjct 1300 GTGATGTAAGGAATAGA-GTGAAGGAAATGGCTGAGATGTGTCA-TGTGGCGTTAATGGA 1357
Query 1374 CGGTGGATCTTCGAAGGCGGCTTTGGAAAAGTTTATTCAAGACGTGATAGAGAAT 1428
|||||||||||| ||| | |||||| |||||||||||||||||||||||||||||
Sbjct 1358 CGGTGGATCTTCCAAGACTGCTTTGCAAAAGTTTATTCAAGACGTGATAGAGAAT 1412
> Ahg333019 jgi|Araly1|333019|fgenesh1_pm.C_scaffold_9000047
Length=1389
Score = 917 bits (496), Expect = 0.0
Identities = 1149/1451 (79%), Gaps = 97/1451 (7%)
Strand=Plus/Plus
Query 1 ATGAAGATTGAGCTTGTGTTCATACCTTTGCCGGGGATTGGTCATCTCAGGCCAACCGT- 59
||||||||||||||||| |||||||| || || || || ||||| | || ||||||| |
Sbjct 1 ATGAAGATTGAGCTTGTTTTCATACCGTTACCAGGTATCGGTCACCGCAAGCCAACCATC 60
Query 60 GAAGCTAGCGAAGCAACTCATAGGCAGCGAAAACCGTCTTTCGATCACCATAATCATCAT 119
| || ||||||||| ||| | ||||||| |||| ||||| |||||| | ||||||||
Sbjct 61 G-AGTTAGCGAAGCGACTTGTCCGCAGCGATGACCGCCTTTCCATCACCGTGATCATCAT 119
Query 120 CCCTT-CA-AGATTTGA-CGCCGGTGATGCATCCGCCTGTATCGCATCTCTCACCACGTT 176
||||| || | | | ||||| |||| || ||| ||| ||||| ||| | |||
Sbjct 120 CCCTTCCATAAACAACATCGCCGATGAT---TCTACCTATATAGCATCACTCTCAACGAC 176
Query 177 GTCTCAAGATGATCGCCTCCATTACGAATCCATATCCGTCGCAAA-A-CAACCACCAACC 234
|||| | | |||||||||| || ||| |||| ||| | |||| | |||||| |||||
Sbjct 177 ATCTC-A-A-GATCGCCTCCGCTATGAAACCATCTCCAT--CAAAGATCAACCAACAACC 231
Query 235 TCCGACCCGGATCCTGTTCCGGCTCAAGTGTACATAGAGAAACAAAAGACGAAA-GTGAG 293
| || || || | | ||| ||||||| ||||| ||||| |||||| | ||| || ||
Sbjct 232 GCAGATCC-GAAGCAG--CCGACTCAAGTCTACATCGAGAATCAAAAG-CCAAAGGTAAG 287
Query 294 AGATGCAGTCGCGGCGAGAATCGTC---GATCCAACAAGAAAGCTCGCGGGATTCGTGGT 350
|||| ||| | |||||| ||| ||||||||| || |||||| |||||||||||
Sbjct 288 AGATATAGT--C-TTGAGAATAGTCAATGATCCAACACGACGGCTCGCTGGATTCGTGGT 344
Query 351 GGACATGTTCTGTTCCTCGATGATCGATGTAGCTAACGAGTTTGGA-GTTCCG-TGTTAT 408
||| |||||||||| ||| ||||| |||||||||||||| || || ||||| | ||||
Sbjct 345 GGATATGTTCTGTTTCTCAATGATAGATGTAGCTAACGA-ATTCGATATTCCGAT-TTAT 402
Query 409 ATGGTATACACATCGAACGCTACGTTTTTAGGAACCATGCTTCACGTTCAACAAATGTAC 468
||| | ||| ||||||||||||||||||| || | || | ||| ||| || | |
Sbjct 403 ATGTTCTACGCATCGAACGCTACGTTTTT-GGGA--AT--TACAC-TTC-AC--A--T-- 449
Query 469 GATCAAAAGAAGT-ATG-ACGTCAGCGAGTTAGAAAACTCGGTCACCGAGTTGGAGTTTC 526
|| || | | ||| ||| | |||| | |||| || | ||||| |||||||
Sbjct 450 --TC---AG-A-TAATGCACG--A-CGAG--A-AAAA----GT-A-TGAGTTAGAGTTTC 490
Query 527 CGTCTCTGACTCGTCCTTATCCAGTGAAGTGT-CTTCCTCATATCCTCACTTCAAAGGAG 585
||| | |||||||||||||||| ||||||| | || ||| || || |||||||||| ||
Sbjct 491 CGTGTTTGACTCGTCCTTATCCTGTGAAGT-TACTGCCTTATCTCTTCACTTCAAAACAG 549
Query 586 TGGTTACCTCTCTCTCTAGCTCAAGCTAGGTGTTTCCGGAAGATGAAGGGTATTTTGGTA 645
||| ||||| | | | ||||||||||||| |||| |||||||||||||||||||||
Sbjct 550 TGGCTACCTTTGTTTTTAGCTCAAGCTAGAAAACTCCGAAAGATGAAGGGTATTTTGGTA 609
Query 646 AATACAGTTGCTGAGCTTGAACCTCACGCTTTGAAAATGTTCAATATTAATGGTGACGAT 705
|||||||||||||||||||| || |||||||||||||||||||| | | ||||| |||
Sbjct 610 AATACAGTTGCTGAGCTTGAGCCACACGCTTTGAAAATGTTCAACAATGTTGGTGGTGAT 669
Query 706 CTTCCTCAAGTTTATCCTGTTGGACCAGTGTTGCATCTCGAAAACGGCAATGACGATGAT 765
||||||||||||||||| | |||||||| |||||||||||| | | ||| ||
Sbjct 670 CTTCCTCAAGTTTATCCAATAGGACCAGTTTTGCATCTCGAA---G--A----CGA-GA- 718
Query 766 GAGAAGCAATCGGAAATTTTGCGGTGGCTCGACGAGCAACCGTCTAAATCTGTTGTGTTT 825
|| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 719 -AG---CAATCGGAGATTTTGCGGTGGCTCGATGAGCAACCGGCTAAATCTGTTGTGTTC 774
Query 826 CTCTGCTTTGGGAGCTTGGGAGGTTTCACTGAAGAACAAACAAGAGAAACCGCTGTGGCC 885
||||| ||||||||| |||||||||| | ||| |||||||||| ||||| ||| || ||
Sbjct 775 CTCTGTTTTGGGAGCATGGGAGGTTTTAATGAGGAACAAACAAAAGAAATCGCCGTCGCG 834
Query 886 CTAGATA-GAAGCGGTCAGCGGTTTCTTTGGTGTCTTCGTCACGCATCGCCAAATATAAA 944
||||| | |||||||| | ||||||||||||| ||| |||| |||||| | |||||||
Sbjct 835 CTAGA-ACGAAGCGGTTACCGGTTTCTTTGGTCTCTCCGTCGCGCATCACGGAATATAAT 893
Query 945 AACAGATCGTCCCAGAGATTACACGAATCTTGAGGAGGTTTTACCGGAGGGGTTCTTGGA 1004
|| |||||| |||||| ||| || || ||||| ||| | |||||||| ||| | |
Sbjct 894 GGTGGAACGTCCCGGAGATTTCACAAACCTAGAGGAAGTTCTCCCGGAGGGTTTCCTA-A 952
Query 1005 A-CGGACTTTGGATAGAGGGAAAGTGATTGGATGGGCACCACAAGTGGCGGTACTAGAGA 1063
| || || | ||||| |||||| || || ||||||||||| ||||||||||| |||| ||
Sbjct 953 ATCGTACATCGGATAAAGGGAAGGTAATCGGATGGGCACCGCAAGTGGCGGTGCTAGCGA 1012
Query 1064 AGCCGGCGATAGGAGGGTTTGTCACTCACTGCGGTTGGAACTCTATTTTAGAGAGCTTGT 1123
| ||||||| |||||| || |||||||| ||||| |||||||| || |||||||||||||
Sbjct 1013 AACCGGCGACAGGAGGATTCGTCACTCATTGCGGGTGGAACTCGATGTTAGAGAGCTTGT 1072
Query 1124 GGTTCGGTGTTCCAATGGTGACGTGGCCGCTATACGCGGAACAGAAGGTTAACGCGTTT- 1182
|||| |||||||| |||||| |||||||||| ||| | || || ||||| ||||| |||
Sbjct 1073 GGTTTGGTGTTCCGATGGTGGCGTGGCCGCTTTACTCCGAGCAAAAGGTAAACGC-TTTC 1131
Query 1183 GAGATGGTTGAGGAGCTGGGTTTGGCGGTGGAGATACGGAAGTACTTAAAAGGAGATTTG 1242
|||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1132 GAGATGGTGGAGGAGCTAGGATTGGCGGTGGAGATACGGAAGTATTTAAAAGGAGAGTTG 1191
Query 1243 TTCGCCGGAGAGATGGAGACGGTTACCGCGGAGGATATAGAGAGAGCCATTAGGCGTGTG 1302
|| |||||||||||||||||||| || |||||||| ||||||||||| || | |||||||
Sbjct 1192 TTGGCCGGAGAGATGGAGACGGTCACGGCGGAGGAGATAGAGAGAGCGATGAAGCGTGTG 1251
Query 1303 ATGGA-GCAAGACAGTGACGTTAG-GA-ACAACGTGAAAGAGATGGCGGAGAAGTGCCAC 1359
||||| | | || |||||||||| || | | ||||| |||||||| |||||| ||||
Sbjct 1252 ATGGAAG-AGGATTGTGACGTTAGAGATAGA--GTGAAGGAGATGGCAAAGAAGTTCCAC 1308
Query 1360 TTCGCGTTAATGGACGGTGGATCTTCGA-AGGCGGCTTTGGAAAAGTTTATTCAAGACGT 1418
|| ||||||||||| ||||||||||| | | | ||||||| |||||||||| ||||||||
Sbjct 1309 TTGGCGTTAATGGAAGGTGGATCTTC-ACATGTGGCTTTGCAAAAGTTTATGCAAGACGT 1367
Query 1419 GATAGAGAATA 1429
| | ||||||
Sbjct 1368 TA-A-AGAATA 1376
> Ahg493362 jgi|Araly1|493362|fgenesh2_kg.7__2795__AT4G15260.1
Length=1550
Score = 782 bits (423), Expect = 0.0
Identities = 589/670 (88%), Gaps = 8/670 (1%)
Strand=Plus/Plus
Query 774 ATC-GGAAATTTTGCGGTGGCTCGACGAGCAACCGTCTAAATCTGTTGTGTTTCTCTGCT 832
||| ||| ||||||||||||||||| ||||||||| | ||||||||||||||||| ||||
Sbjct 717 ATCTGGAGATTTTGCGGTGGCTCGATGAGCAACCGCCGAAATCTGTTGTGTTTCTTTGCT 776
Query 833 TTGGGAGCTTGGGAGGTTTCACTGAAGAACAAACAAGAGAAACCGCTGTGGCCCTAGATA 892
|||| ||| |||||||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 777 TTGGAAGCATGGGAGGTTTCACTGAGGAGCAAACTAGAGAGGTAGCTGTAGCGTTAGATC 836
Query 893 GAAGCGGTCAGCGGTTTCTTTGGTGTCTTCGTCACGCATCGCCAAATATAAAAACAGATC 952
|||| ||||| ||||||||||||| ||| |||| |||||||| ||||||| | || |
Sbjct 837 GAAGTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGATGGAAC 896
Query 953 GTCCCAGAGATTACACGAATCTTGAGGAGGTTTTACCGGAGGGGTTCTTGGAACGGACTT 1012
||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 897 GTCCCGGAGATTATACGAATCTTGAGGAGGTTTTACCGGAGGGGTTCTTGGAGCGGACGT 956
Query 1013 TGGATAGAGGGAAAGTGATTGGATGGGCACCACAAGTGGCGGTACTAGAGAAGCCGGCGA 1072
|||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 957 CGGATAGAGGGAAAGTGATCGGATGGGCACCACAAGTGGCGGTGCTAGAGAAACCGGCGA 1016
Query 1073 TAGGAGGGTTTGTCACTCACTGCGGTTGGAACTCTATTTTAGAGAGCTTGTGGTTCGGTG 1132
||||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||
Sbjct 1017 TAGGAGGGTTTGTTACTCATTGTGGTTGGAACTCGATGCTAGAGAGCTTGTGGTTTGGTG 1076
Query 1133 TTCCAATGGTGACGTGGCCGCTATACGCGGAACAGAAGGTTAACGCGTTTGAGATGGTTG 1192
|||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1077 TTCCGATGGTGACGTGGCCGCTTTACGCGGAGCAGAAGGTTAACGCGTTTGAGATGGTGG 1136
Query 1193 AGGAGCTGGGTTTGGCGGTGGAGATACGGAAGTAC-TTAAAAGGAGATTTGTTC--GC-C 1248
||||| |||| ||||||||||||||||| |||| | ||| | ||||||||||| | |
Sbjct 1137 AGGAGTTGGGGTTGGCGGTGGAGATACGTAAGTGCATTAGA-GGAGATTTGTTGTTGATC 1195
Query 1249 GGAGAGATGGAGACGGTTACCGCGGAGGATATAGAGAGAGCCATTAGGCGTGTGATGGAG 1308
||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 1196 GGAGAAATGGAGACGGTTACGGCGGAGGATATAGAGAGAGCTATCAGGCGTGTGATGGAG 1255
Query 1309 CAAGACAGTGACGTTAGGAACA-ACGTGAAAGAGATGGCGGAGAAGTGCCACTTCGCGTT 1367
|| || ||||| || |||| | | ||||| ||||||||||||||||| ||| | |||||
Sbjct 1256 CAGGATAGTGATGTAAGGAGTAGA-GTGAAGGAGATGGCGGAGAAGTGTCACGTGGCGTT 1314
Query 1368 AATGGACGGTGGATCTTCGAAGGCGGCTTTGGAAAAGTTTATTCAAGACGTGATAGAGAA 1427
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1315 AATGGACGGTGGATCTTCGAAGACGGCTTTGGAAAAGTTTATTGAAGACGTGATAGAGAA 1374
Query 1428 TATGGATTAA 1437
| ||||||||
Sbjct 1375 TGTGGATTAA 1384
Score = 665 bits (360), Expect = 0.0
Identities = 623/743 (84%), Gaps = 46/743 (6%)
Strand=Plus/Plus
Query 6 GATTGAGCTTGTGTTCATACCTTTGCCGGGGATTGGTCATCTCAGGCCAACCGTGAAGCT 65
||||||||| ||||||||||||| |||||| ||||| |||||| ||||||||||||||||
Sbjct 19 GATTGAGCTCGTGTTCATACCTTCGCCGGGAATTGGCCATCTCCGGCCAACCGTGAAGCT 78
Query 66 AGCGAAGCAACTCATAGGCAGCGAAAACCGTCTTTCGATCACCATAATCATCATCCCTTC 125
||| |||||| | | | | || || |||||| ||||||||||||||||
Sbjct 79 AGCAAAGCAA--C-T------C----A---TC--TCAATCACCGTAATCATCATCCCTTC 120
Query 126 AAGATTTGACGCCGGTGATGCATCCGCCTGTATCGCATCTCTCACCAC-GTTGTCTCAAG 184
||| ||||||||||||||| |||||| ||||||||| ||||| || | ||||| |
Sbjct 121 CAGAAACGACGCCGGTGATGCAACCGCCTATATCGCATCCCTCACGACAG-AGTCTC-A- 177
Query 185 ATGATCGCCTCCATTACGAATCCATATCCGTCGCAAAACAACCACCAACCTCCGACCCGG 244
| ||||| |||| ||||||| |||| ||||||| |||| ||||||||| ||| ||
Sbjct 178 A-GATCGTCTCCGTTACGAACCCATCTCCGTCGTAAAAGAACCACCAA---CCG--CC-A 230
Query 245 ATCCT-GTTCCGGCTCAAGTGTACATAGAGAAACAAAAGA-CGAAAGTGAGAGATGCAGT 302
|| || | || ||||||| ||||| ||||||||||| | | ||||||||||| || |
Sbjct 231 AT-CTAGAACCATCTCAAGTCTACATCGAGAAACAAAA-ACCAAAAGTGAGAGACACAAT 288
Query 303 CGCGGCGAGAATCGTCGATCCAACAAGAAAGCTCGCGGGATTCGTGGTGGACATGTTCTG 362
| | | |||||| || |||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 289 CTC--C-AGAATCATCAATCCAACACGAAAACTCGCTGGATTCGTGGTGGACATGTTCTG 345
Query 363 TTCCTCGATGATCGATGTAGCTAACGAGTTTGGAGTTCCGTGTTATATGGTATACACATC 422
||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||
Sbjct 346 TTCCTCGATGATCGATGTAGCTAACGAATTCGGAGTTCCGTGTTATATGATCTACACATC 405
Query 423 GAACGCTACGTTTTTAGGAACCATGCTTCACGTTCAACAAATGTACGATC-AAAAGAAGT 481
||||| |||||| | |||| || ||||||||||||||||||||||| | | ||||| |
Sbjct 406 AAACGCGACGTTTCTGGGAATCACACTTCACGTTCAACAAATGTACGA-CGACAAGAAAT 464
Query 482 ATGACGTCAGCGAGTTAGAAAACTCGGTCACCGAGTTGGAGTTTCCGTCTCTGACTCGTC 541
|||||||||||| || || | || |||| ||| ||||||||||||| | |||||||||
Sbjct 465 GTGACGTCAGCGATTTGGATGAGTCAGTCAACGAATTGGAGTTTCCGTGTTTGACTCGTC 524
Query 542 CTTATCCAGTGAAGTGTCTTCCTCATATCCTCACTTCAAAGGAGTGGTTACC-TCTCTCT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 525 CTTATCCAGTGAAGTGTCTTCCTCATATCCTCACTTCAAAGGAGTGGTTACCAT-TCTTT 583
Query 601 CTAGCTCAAGCTAGGTGTTTCCGGAAGATGAAGGGTATTTTGGTAAATACAGTTGCTGAG 660
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GTAGCTCAAGCTAGATTTTTCCGGAAGATGAAGGGTATTTTGGTAAATACAGTTGCTGAG 643
Query 661 CTTGAACCTCACGCTTTGAAAATGTTCAATATTAATGGTGACGATCTTCCTCAAGTTTAT 720
|| |||||||||||||| |||||||| |||| | || ||| ||||||||||| ||||
Sbjct 644 CTAGAACCTCACGCTTTAAAAATGTTTAATA--A-TGTTGA---TCTTCCTCAAGCTTAT 697
Query 721 CCTGTTGGACCAGTGTTGCATCT 743
||| |||||||||||||||||||
Sbjct 698 CCTATTGGACCAGTGTTGCATCT 720
> Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1
Length=1395
Score = 448 bits (242), Expect = 7e-125
Identities = 406/485 (84%), Gaps = 11/485 (2%)
Strand=Plus/Plus
Query 644 TAAATACAGTTGCTGAGCTTGAACCTCACGCTTTGAAAATGTTCAATATTAATGGTGACG 703
||||||||||||||||||| |||||||| ||| |||||||||| || ||||||||||
Sbjct 554 TAAATACAGTTGCTGAGCTCGAACCTCAAGCTGTGAAAATGTT---TAACAATGGTGACG 610
Query 704 ATCTTCCTCAAGTTTATCCTGTTGGACCAGTGTTGCATCTCGAAAACGGCAATGACGATG 763
|||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 611 ATCTTCCTCAAGTTTATCCTGTTGGACCAGTGTTGCATCTCGAAAAAACCTTTGACGACG 670
Query 764 ATGAGAAGCAATCGGAAATTTTGCGGTGGCTCGACGAGCAACCGTCTAAATCTGTTGTGT 823
||| || |||||||| |||||||||||||| || ||||||||| | ||||| |||||||
Sbjct 671 TTGAAAAACAATCGGATATTTTGCGGTGGCTTGATGAGCAACCGCCAAAATCGGTTGTGT 730
Query 824 TTCTCTGCTTTGGGAGCT-TGGGAGGTTTCACTGAAGAACAAACAAGAGAAACCGCTGTG 882
| || ||||||||||| | ||||||| |||| ||| ||||||||| |||| | || ||
Sbjct 731 TCCTTTGCTTTGGGAG-TATGGGAGGCTTCAATGAGGAACAAACACGAGAGATTGCCGTC 789
Query 883 GCCCTAGATAGAAGCGGTCAGCGGTTTCTTTGGTGTCTTCGTCACGCATCGCCAAA-TAT 941
|| ||||||||| ||| | |||||||| |||| || || | ||||||||||| | |
Sbjct 790 GCGTTAGATAGAAATGGTTACCGGTTTCTCTGGTCCCTCCGCCGGGCATCGCCAAACTTT 849
Query 942 AAAAACAGATCGTCCCAGAGATTACACGAATCTT-GAGGAGGTTTTACCGGAGGGGTTCT 1000
| | || ||||| ||||||| |||||| || ||||||||| |||||||||| |||
Sbjct 850 TTGA-CGGAGCGTCCTGGAGATTATACGAAT-TTAGAGGAGGTTCTACCGGAGGGATTCC 907
Query 1001 TGGAACGGACTTTGGATAGAGGGAA-AGTGATTGGATGGGCACCACAAGTGGCGGTACTA 1059
| || ||||| |||||||||||||| | | || |||||||| |||||||||||||| |||
Sbjct 908 TAGATCGGACATTGGATAGAGGGAAGA-TAATCGGATGGGCTCCACAAGTGGCGGTGCTA 966
Query 1060 GAGAAGCCGGCGATAGGAGGGTTTGTCACTCACTGCGGTTGGAACTCTATTTTAGAGAGC 1119
|| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 967 GAAAAGCCGGCGATAGGAGGGTTTGTTACTCACTGCGGTTGGAACTCGATGCTAGAGAGC 1026
Query 1120 TTGTG 1124
|||||
Sbjct 1027 TTGTG 1031
Score = 399 bits (216), Expect = 2e-110
Identities = 462/574 (80%), Gaps = 43/574 (7%)
Strand=Plus/Plus
Query 1 ATGAAGATTGAGCTTGTGTTCATACCTTTGCCGGGGATTGGTCATCTCAGGCCAACCGT- 59
||||||| |||||||||||||||||| | ||| || || |||||||||||| |||||||
Sbjct 1 ATGAAGAATGAGCTTGTGTTCATACCGTCGCCAGGAATCGGTCATCTCAGGTCAACCGTC 60
Query 60 GAAGCTAGCGAAGCAACTCATAGGCAGCGAA-AACCGTCTTTCGATCACCATAATCATCA 118
| |||||||||||| |||| | |||||| || |||| |||||||||||| |||||||||
Sbjct 61 G-AGCTAGCGAAGCGACTCGTCGGCAGC-AATTACCGCCTTTCGATCACCGTAATCATCA 118
Query 119 TCCCTTCAAGAT-TTGACGCCGGTGA-TGCATCCGCCTGTATCGCATCTCTCACCA-CGT 175
|||||| | | |||| | | | || | || ||| ||| ||||| ||||| | ||
Sbjct 119 TCCCTT-ACCCTAGCGACGAC-GACAGTGAAACCACCTATATAGCATCCCTCACGACCG- 175
Query 176 TGTCTCAAGATGATCGCCTCCATTACGAATCCATATCCGTCGCAAAACAACCACCAACCT 235
|||||||| | ||| ||| | |||||| |||| ||||||||| | | | |||||
Sbjct 176 CGTCTCAAG--G-TCGTCTCAACTACGAAGCCATCTCCGTCGCATATC-A--ACCAA--- 226
Query 236 CCGACCCGGATCCTGTTCCGGC-TCAAGTGTACATAGAGAAACAAAAGACGAAAGTGAGA 294
||| || ||||| | || | |||||| ||||| |||||||||||| || ||||||||
Sbjct 227 CCG--CC-GATCCAGAGCC-ACTTCAAGTATACATCGAGAAACAAAAGCCGCAAGTGAGA 282
Query 295 GATGCAGTCGCGGCGAGAATCGTCGATCCAACAAGA-AAG-CT--CG-CG-------GGA 342
|||| || | ||||||||| | ||| |||||||| | || || || |||
Sbjct 283 GATGTGGT--C-GCGAGAATCTTTGATTCAACAAGAGTTGACTCGCGACGACTATCCGGA 339
Query 343 TTCGTGGTGGACATGTTCTGTTCCTCGATGATCGATGTAGCTAACGAGTTTGGAGTTCCG 402
||||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 340 TTCGTCGTGGACATGTTCTGTTCCTCGATGATCGATGTAGCTAACGAATTCGAAGTTCCG 399
Query 403 TGTTATATGGTATACACATCGAACGCTACGTTTTTAGGAACCAT-GCTTCACGTTCAACA 461
|||||||||||||||||||| |||||||||||||| |||| | | | ||||| |||||||
Sbjct 400 TGTTATATGGTATACACATCAAACGCTACGTTTTTGGGAATC-TCGTTTCACCTTCAACA 458
Query 462 AATGTACGATCAA-AAGAAGTATGACGTCAGCGAGTTAGAAAACTCGGTCACCGAGTTGG 520
||||||||| | | ||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 459 AATGTACGA-CGAGAAGAAGTATGACGTCAGCGAGTTGGAAGACTCGGTCAACGAGTTGG 517
Query 521 AGTTTCCGTCTCTGACTCGTCCTTATCCAGTGAA 554
||||||| | | ||||||||||||| || |||||
Sbjct 518 AGTTTCCATGTTTGACTCGTCCTTACCCTGTGAA 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5