BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15430.1
Length=2588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493346 jgi|Araly1|493346|fgenesh2_kg.7__2779__AT4G15430.1 4023 0.0
Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075 1585 0.0
> Ahg493346 jgi|Araly1|493346|fgenesh2_kg.7__2779__AT4G15430.1
Length=2511
Score = 4023 bits (2178), Expect = 0.0
Identities = 2408/2517 (96%), Gaps = 23/2517 (1%)
Strand=Plus/Plus
Query 87 CAATAAAGCTTTGTCTTTTA--GCTTTT-----CTAGAAGGAAGAGTAG-TAGTATCTTC 138
|||||||||||||||||||| ||||| ||||||||||||||| || |||||||
Sbjct 1 CAATAAAGCTTTGTCTTTTACCTCTTTTAAAAGGTAGAAGGAAGAGTAGTTA-TATCTTC 59
Query 139 TTTTTCACAGTCTCATGGCTACAATAAACGATATTGGAGTAGCAGCAGCAATCAATATAG 198
|| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTTGACACTCTCATGGCTACAATAAACGATATTGGAGTAGCAGCAGCAATCAATATAG 119
Query 199 TCACAGCATTTGCTTTTCTCTTAGCTTTTGCTATATTCAGGATTCAACCAGTAAATGACA 258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCACAGCATTAGCTTTTCTCTTAGCTTTTGCTATATTCAGGATTCAACCAGTAAATGACA 179
Query 259 GAGTCTATTTCCCTAAATGGTATCTCAAGGGCTTAAGAAGTAGTTCTATACAAACTGGTG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGTCTATTTCCCTAAATGGTATCTCAAGGGCTTAAGAAGTAGTTCTATACAAACTGGTG 239
Query 319 GCTTTGGTAGCAAATTCATCAATTTGGACTTCAGGTCCTATATTCGTTTCCTCAATTGGA 378
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 240 GCTTTGGTAGCAAATTCATCAACTTGGACTTCAGATCCTATATTCGTTTCCTTAATTGGA 299
Query 379 TGCCTGAAGCACTTAAAATGCCAGAACCGGAACTCGTCGATCACGCTGGACTCGATTCTG 438
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 300 TGCCTGAAGCACTTAAAATGCCAGAACCTGAGCTCGTCGATCACGCTGGACTCGATTCTG 359
Query 439 TTGTCTACTTGAGGATCTACTTACTCGGGCTCAAGATCTTTTTCCCTATAGCTTGTGTTG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGTCTACTTGAGGATCTACTTACTCGGGCTCAAGATCTTTTTCCCTATAGCTTGTGTTG 419
Query 499 CTTTTACAACAATGGTTCCTGTTAATTGGACAAACAAAGGATTGGATCGGTTAAGGCATT 558
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 420 CTTTTACGGCAATGGTTCCTGTTAATTGGACAAACAAGGGATTGGATCGGTTAAGACATT 479
Query 559 CCAATATAAGTTTCAGTGATATTGATAAACTCTCTTTATCAAATATACCAAATGGGTCAC 618
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 CTAATATAAGTTTCAGTGATATTGATAAACTCTCTTTATCAAATATACCAAATGGCTCAC 539
Query 619 CTAGATTTTGGGTGCATTTGTGTATGGCTTATGCGATTACCTTCTGGACATGCTTTATCC 678
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 540 CTAGATTTTGGGTGCATTTGTGTATGGCTTATGCTATCACTTTCTGGACATGCTTTATCC 599
Query 679 TGAAAAGAGAGTACCAGAATATAGCTTTAATGAGACTACAGTTTCTTGCAAATGATCAAA 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAAAAGAGAGTACCAGAATATAGCTTTAATGAGACTACAGTTTCTTGCAAATGATCAAA 659
Query 739 GGAGACCTAACCAGTTCACTGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAA 798
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 660 GGAGACCTAACCAGTTCACTGTGCTGGTAAGAAACATTCCTTCAGATCCTCATGAATCAA 719
Query 799 TATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCC 858
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 720 TATGTGAACTTGTTGAACATTTCTTCAAAGTCAACCATCCAGATCACTACCTCACTTTCC 779
Query 859 AGGCAGTCCACGATGCAACCAAACTCTCGGAATTGGTTCTGACGAGGAAACAAATGCAGA 918
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 780 AGGCAGTCCACGATGCAACAAAACTCTCCGAATTGGTTCTGACGAGGAATCAAATGCAGA 839
Query 919 ACCTGCTTGATTACAATATAAACAAACACATGAGGAATCTATCTAACAGGCCAGTAATAA 978
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 ATCTGCTTGATTACAATATAAACAAACACATGAGGAATCAATCTAACAGGCCAGTAATAA 899
Query 979 AGATGGGATTTCTTGGCTGCTGTGGTGAAGAAGCTGATGGAATCAAATATTACACGTCCG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGATGGGATTTCTTGGCTGCTGTGGTGAAGAAGCTGATGGAATCAAATATTACACGTCCG 959
Query 1039 TCGTTGAGGGTCTAACAAGAGAAATATCTGAGGAGAAACAGAGGTTAAGGACCGGCACAA 1098
|||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 960 TCGTCGAGGGTCTAACAAGAGAAATAGCTGAGGAAAAACAGAGGTTAAGGACCGGCACAA 1019
Query 1099 AGTCCATAGTGCCTGCAGCTTTTGTATCTTTCAAGAGCCGTTGGGGAGCAGCGGTTTGTG 1158
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGTCCATAGTGCCTGCGGCTTTTGTATCTTTCAAGAGCCGTTGGGGAGCAGCGGTTTGTG 1079
Query 1159 CTCAAACTCAACAGACAAGAAACCCAACAGAATGGCTAACTGAGTGGGCTGCAGAGCCAC 1218
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 CTCAAACTCAACAAACAAGAAACCCAACAGAATGGCTAACCGAGTGGGCTGCAGAGCCAC 1139
Query 1219 GTGACATCTACTATGACAATCTGGCATTGCCATATGTAGACCTTAAGATAAGGAGGCTCA 1278
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1140 GTGACATCTACTATGACAATCTGGCATTGCCATATGTCGACCTTAAGATAAGGCGGCTCA 1199
Query 1279 TAGTCGGCGTCGCATACTTCTTCCTCACCTTCTTCTTCATGATACCAATAGCATTTGTAC 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TAGTCGGCGTCGCATACTTCTTCCTCACCTTCTTCTTCATGATACCAATAGCATTTGTAC 1259
Query 1339 AGTCACTCGCCAACATCGAAGGCATAGAGAAGGCTTTTCCTTTCTTGAAGCCCCTTATAG 1398
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGTCACTTGCCAACATCGAAGGCATAGAGAAGGCTTTTCCTTTCTTGAAGCCCCTTATAG 1319
Query 1399 AAGTGAAATTGTTAAAGTCGATCATCCAAGGTTTCCTTCCCGGAATCGCCTTGAAGATCT 1458
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1320 AAGTGAAATTGTTAAAGTCGATCATCCAAGGTTTCCTTCCCGGAATCGCTTTGAAGATCT 1379
Query 1459 TCCTCCTTTTCCTCCCAAGAATACTCATGCAGATGTCCAAATTTGAAGGTTTTGTCAGCA 1518
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1380 TCCTCCTTTTCCTCCCAAGAATACTGATGCAAATGTCCAAATTCGAAGGTTTTGTCAGCA 1439
Query 1519 CATCCTCATTAGAAAGAAGAGCTGCAACTAGATTCTACATGTTCCAATTCATCAATGTTT 1578
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1440 CATCCTCATTAGAAAGAAGAGCCGCAACTAGATTCTACATGTTCCAGTTCATCAATGTTT 1499
Query 1579 TCCTTGGAAGCATAGTCACCGGGACTGCGTTTCAACAGCTCAACAGTTTCCTTAACCAGT 1638
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCCTCGGAAGCATAGTCACCGGGACTGCGTTTCAACAGCTCAACAGTTTCCTTAACCAGT 1559
Query 1639 CTGCAAACGATATTCCAAAAACAATTGGTGTCTCGATTCCAATGAAAGCGACCTTCTTTA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTGCAAACGATATTCCAAAAACAATTGGTGTCTCGATTCCAATGAAAGCGACCTTCTTTA 1619
Query 1699 TAACATACATAATGGTGGATGGATGGGCTGGTGTTGCTGGTGAGATATTGAGGTTGAAGC 1758
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1620 TAACATACATAATGGTTGATGGATGGGCTGGTGTTGCTGGGGAGATATTGAGGTTGAAGC 1679
Query 1759 CACTCATAATCTATCATCTAAAGAACTCCTTCCTCGTGAGAACCGAAAAAGATAGGGAAG 1818
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1680 CACTCATAATCTATCATCTAAAGAACTCCTTCCTCGTGAGAACCGAGAAAGATAGGGAAG 1739
Query 1819 AAGCAACTGATCCTGGAACCATAGGATTCAACACTGGTGAGCCTCAAATACAACTCTACT 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AAGCAACTGATCCTGGAACCATAGGATTCAACACTGGTGAGCCTCAAATACAACTCTACT 1799
Query 1879 TCCTTCTTGGTCTTGTTTACGCAGCAGTTAGCCCCATCCTTCTCCCTTTTATCCTCGTCT 1938
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1800 TCCTTCTTGGTCTTGTTTACGCAGCAGTTAGCCCCATCCTTCTCCCCTTTATCCTCGTCT 1859
Query 1939 TCTTCGGCCTGGCTTTTGTAGTGTACCGTCATCAGGTTATAAATGTGTATAACCAAAAGT 1998
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1860 TCTTCGGCCTGGCTTTCGTAGTGTACCGTCATCAGGTTATAAATGTGTATAATCAAAAGT 1919
Query 1999 ATGAGAGCGCAGGGAAGTTCTGGCCTGACGTTCACAGGCGTGTTGTGACCGCATTGGTTG 2058
|||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1920 ATGAAAGTGCAGGGAAGTTCTGGCCTGACGTTCACAGGCGTGTTGTGACCGCACTGGTTG 1979
Query 2059 TTTCACAGCTGCTCTTGATGGGTCTTCTAAGCACCAAACACGCTTCTAAGTCCACTCC-T 2117
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1980 TTTCGCAGCTGCTCTTGATGGGTCTTCTAAGCACCAAACACGCTTCTAAGTCCACTCCAT 2039
Query 2118 TTGCTGCTTGTGCTTCCGTTGCTGACCATCGGGTTCCACAAACACTGCAAAAACCGTTAC 2177
|| ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2040 TT-CTGCTTGTGCTTCCGCTGCTGACCATCGGGTTCCACAAGCACTGCAAAAATCGTTAC 2098
Query 2178 CAACCTGCCTTTGTCACATACCCGTTACAGCAGGAAGCCATGATCAAAGATACACTGGAC 2237
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2099 CAACCTGCTTTTGTAACATACCCGTTACAGCAGGAAGCTATGATCAAAGATACACTGGAC 2158
Query 2238 CGTATACGTGAACCAAACTTAAACCTCAAAGCTTTCCTTCGAGACGCCTACGCCCACCCG 2297
|| |||||||| || ||||| |||||||| |||||||||||||| || |||||||||||
Sbjct 2159 CGCATACGTGAGCCTAACTTTAACCTCAAGGCTTTCCTTCGAGATGCGTACGCCCACCCA 2218
Query 2298 GAGTTCAGGGTTGGAGAAGATCCAGAGCCCGAGGAGAAGCTGGAGTCTGATATGTCACCT 2357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 GAGTTCAGGGTTGGAGAAGATCCAGAGCCCGAGGAGAAGCTGGAGTCTGATATGTCACCA 2278
Query 2358 CCGGATTTAGTGGCCACTAAGCGTTGG-TCATGGAGGAACACTCCTTTGCCTAGCAAAGA 2416
||||| ||||||||||| |||||| || |||||||||||||||||| ||||||||||| |
Sbjct 2279 CCGGAATTAGTGGCCACAAAGCGT-GGCTCATGGAGGAACACTCCTCTGCCTAGCAAACA 2337
Query 2417 TAGCTGCCGTGAAATACCCTAATCCTT-G-CTCTGTTCTACCTTTAACGGTGATTCTTTT 2474
||||||||||| |||||||||||||| | |||||||||||||| || ||||||||||||
Sbjct 2338 AAGCTGCCGTGATATACCCTAATCCTTTGGCTCTGTTCTACCTTAAATGGTGATTCTTTT 2397
Query 2475 ATATTCTTACACAAGTTTTCCTCTCATTAGAAGAAATGTACATATATACGATTGTATTAT 2534
||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 2398 ATATTCTTAAACAAGTTTTCCCCTCAGTAGAAGAAATGTACATATA--CGATTGTATTAT 2455
Query 2535 ATGCAAGaaaaa-aaaaTAC----CATTTGGAAAAGCATACGAGAAGTTTCTGTTAG 2586
|||||||||||| |||| | |||| | |||||||||| ||||||| |||||||
Sbjct 2456 ATGCAAGAAAAAGAAAAAAAAAAACATTAG-AAAAGCATACTAGAAGTTACTGTTAG 2511
> Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075
Length=2271
Score = 1585 bits (858), Expect = 0.0
Identities = 1765/2194 (80%), Gaps = 97/2194 (4%)
Strand=Plus/Plus
Query 153 ATGGCTACAATAAACGATATTGGAGTAGCAGCAGCAATCAATATAGTCACAGCATTTGCT 212
||||||||| |||||||||| ||||| |||||||| |||||||| | || ||||| ||
Sbjct 1 ATGGCTACACTAAACGATATCGGAGTCGCAGCAGCGATCAATATCTTAACCGCATTCGC- 59
Query 213 TTTCTCTTA--GCTTTTGCTA-TATTCAGGA-TTCAACCAGTAAATGACAGAGTCTATTT 268
|||| ||| || ||||| | | || | || |||||||||| || ||||||||||||||
Sbjct 60 GTTCT-TTATCGCCTTTGCGATTCTT-A-GACTTCAACCAGTTAACGACAGAGTCTATTT 116
Query 269 CCCTAAATGGTATCTCAAGGGCTTAAGAAGTAGTTCTA-TACAAACTGGTGGCTTTGGTA 327
||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||| ||
Sbjct 117 CCCTAAATGGTATCTCAAGGGTTTAAGAAGTAGCCCTATTA-AAACTGGTGGCTTTGCTA 175
Query 328 GCAAATTCATCAATTTGGA-CTTCAGGTCCTATATTC-GTTTCCTCAATTGGATGCCTGA 385
|||| || |||||||||| ||| | || || | || | ||| | |||||||||||| |
Sbjct 176 GCAAGTTTGTCAATTTGGATTTTC-GATCTTACA-TCAGATTCTTGAATTGGATGCCTCA 233
Query 386 AGCACTT-AAAATGCCAGAACCGGAACTCGTCGATCACGCTGGACTCGATTCTGTTGTCT 444
||| || | |||||| || || ||||| | ||||| ||||| | |||||||||||||
Sbjct 234 AGC-TTTGAGAATGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGTTGTCT 292
Query 445 ACT-TGAGGATCTACTTACTCGGGCTCAAGATCTTTTTCCCTATAGCTTGTGTTGCTTTT 503
| | | ||||| |||||||| ||| | ||||||||||| |||||||| ||| ||||||||
Sbjct 293 A-TCTCAGGATTTACTTACTTGGGTTGAAGATCTTTTTTCCTATAGCATGTATTGCTTTT 351
Query 504 ACAACAATGGTTCCTGTTAATTGGACAAAC-AAAGGATTGGATCGGTTAAGGCATTCCAA 562
|| |||||| || ||||||||||| ||| | | ||||||| ||||| | ||
Sbjct 352 ACTGTAATGGTACCGGTTAATTGGACCAACTCGACG-TTGGATCAGTTAA---A---GAA 404
Query 563 TATAAGTTTCAGTGATATTGATAAACTCTCTTTATCAAATATACCAAATGGGTCA-CCTA 621
| ||| |||||| ||||| |||||||||||| |||| |||||||||| ||| ||| || |
Sbjct 405 TCTAACTTTCAGCGATATCGATAAACTCTCTATATCGAATATACCAACTGGATCATCC-A 463
Query 622 GATTTTGGGTGCATTTGTGTATGGCTTATGCGATTACCTTCTGGACATGCTTTATCCTGA 681
| |||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
Sbjct 464 GGTTTTGGGTGCATTTGTGTATGGCTTATGTTATTACCTTCTGGACATGCTTTGTTTT-A 522
Query 682 AAA-GAGAGTACCAGAATATAGCTTTAATGAGACTACAGTTTCTTGCAAATGATCAAAGG 740
|| |||||||| ||||||| | || ||||| |||||||||||||| ||| ||||||
Sbjct 523 CAACGAGAGTACAAGAATATTGGTTCCATGAGGCTACAGTTTCTTGCTTCTGAGCAAAGG 582
Query 741 AGACCTAACCAGTTCACTGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAAT- 799
|||||| ||||||| || || || || || ||||||||| |||||||| ||||||| |
Sbjct 583 AGACCTGACCAGTTTACAGTTCTTGTGAGGAACATTCCTCCAGATCCTGATGAATCCGTT 642
Query 800 ATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGA-TCACTATCTCACTTTCC 858
| ||||||||||||| |||||||| || ||||| |||||||| | |||| ||||||| ||
Sbjct 643 A-GTGAACTTGTTGAGCATTTCTTTAAGGTCAACCATCCAGACT-ACTACCTCACTTACC 700
Query 859 AGGCAGTCCACGATGCAACCAAACTCTCGGAATTGGTTCTGACGAGGAAACAAAT-GCAG 917
|||| ||| || | |||| |||||| || |||||||||| || ||||||| |||| ||||
Sbjct 701 AGGCGGTCTACAACGCAAACAAACTGTCTGAATTGGTTCAGAAGAGGAAA-AAATTGCAG 759
Query 918 AACCTG-CTTGATTACAAT-ATAAACAAACACA-TGAGGAATCT-ATCTAACAGGCCAGT 973
|| || ||||||||| || | |||||||||| | ||||||| | |||| ||||| |
Sbjct 760 AAT-TGGCTTGATTACTATCA-AAACAAACACTCT-AGGAATCCGA-CTAAAAGGCCTTT 815
Query 974 AATAAAGATGGGATTTCTTGGCTGCTGTGGTGAAGAAGCTGATGGAATCAAAT-ATTACA 1032
||||||||| || ||||| ||||| || |||||||||| ||||| |||| | | | ||||
Sbjct 816 AATAAAGATAGGTTTTCTCGGCTGTTGGGGTGAAGAAGTTGATGCAATCGA-TCACTACA 874
Query 1033 C-GTCCGTCGTTGAGGGTCTAACAAGAGAAATATCTGAGGAGAAACAGAG-GTTAAGGAC 1090
| | ||||||||||| ||| ||||| ||| ||||| ||| || | | |
Sbjct 875 TAGAAAAAA-TCGAGGGTCTAACGAGAAAAATAAGTGAAGAGAAGGAGACTGTGATG-AG 932
Query 1091 CGGCACAAAGTC-CATAGTGCCTGCAGCTTTTGTATCTTTCAAGAGCCGTTGGGGAGCAG 1149
| ||||||| || | | |||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 933 CAGCACAAAATCGCTT-GTGCCTGCAGCTTTTGTATCCTTCAAAAGGCGTTGGGGCGCAG 991
Query 1150 CGGTTTG-TGCTCAAACTCAACAGACAAGAAACCCAACAGAATGGCTAACTGAGTGGGCT 1208
||||| | |||||||||||||| |||||||||| ||||| |||||||| |||||||||
Sbjct 992 TTGTTTGCT-CTCAAACTCAACAGTCAAGAAACCCGACAGAGTGGCTAACCGAGTGGGCT 1050
Query 1209 GCAGAGCCACGTGACATCTACTATGACAATCTGGCATTGCCATATGTAGACCTTA-AGAT 1267
||||||| || ||||| |||| |||||||| ||||| |||||||| | || | | ||
Sbjct 1051 CCAGAGCCCCGAGACATATACTGGGACAATCTAGCATTACCATATGTTCAACTCACA-AT 1109
Query 1268 AAGGAGGCTCA-TAGTCGGC-GTCGCATACTTCTTCCTCACCTTCTTCTTCATGATACCA 1325
| || || | || | | | || || | |||||||||||| |||||||||||||| ||
Sbjct 1110 CCGAAGACT-AGTAATAG-CTGTGGCTTTCTTCTTCCTCACTTTCTTCTTCATGATCCCT 1167
Query 1326 ATAGCATTT-GTACAGTCACTCGCCAACATCGAAGGCATAGAGAAGGCTTTTCCTTTCTT 1384
||||| ||| || ||| ||||||||||||| |||||||| || |||||| |||| |||||
Sbjct 1168 ATAGC-TTTCGTGCAGACACTCGCCAACATTGAAGGCATCGAAAAGGCTGTTCCATTCTT 1226
Query 1385 GAAGCCCCTTATAGAAGTGAAATTGTTAAAGTCGAT-CATCCAAGGTTTCCTTCCCGGAA 1443
||| || ||||| ||||||||| | ||||||| || |||||||||||||||||| || |
Sbjct 1227 GAAACCGCTTATCGAAGTGAAAACGGTAAAGTC-ATTCATCCAAGGTTTCCTTCCGGGTA 1285
Query 1444 TCGCCTTGAAGATCTTCCTCCTTTTCCTCCCAAGAATACTCATGC-AGATGTCCAAATTT 1502
|||| |||||||| |||||| || |||||||||| ||||| |||| | ||||| |||||
Sbjct 1286 TCGCATTGAAGATATTCCTCATTGTCCTCCCAAGCATACTTATGCTA-ATGTCGAAATTC 1344
Query 1503 GAAGGTTTTGTCAGCACATCCTCATTAGAAAGAAGA-GCTGCAA-CTAGATTCTACATGT 1560
||||| || | || | ||| ||| |||||||||| | ||||| | |||| ||||||||
Sbjct 1345 GAAGGCTTCATAAGTAAATCTTCACTAGAAAGAAGGTG-TGCAAGC-AGATACTACATGT 1402
Query 1561 TCCAATTCATCAATGTTTTCCT-TGGAAGCATAGTCACCGGGACTGCGTTTCAACAGCTC 1619
|||| |||||||| |||||||| || | ||||| || | ||||||||| ||||||||||
Sbjct 1403 TCCAGTTCATCAACGTTTTCCTCTGTA-GCATAATCGCGGGGACTGCGCTTCAACAGCTT 1461
Query 1620 AACAGTTTCCTTAACCAGTCTGCAAACGATATTCCAAAAACAATTGGTGTCTCGATTCCA 1679
||||| ||||| ||||| ||||||| ||| || ||||| ||||||||||| ||||| |||
Sbjct 1462 AACAGCTTCCTAAACCAATCTGCAACCGAAATCCCAAAGACAATTGGTGTGTCGATACCA 1521
Query 1680 ATGAAAGCGACCTTCTTTATAACATACATAATGGTGGATGGATGGGCTGGTGTTGCTGGT 1739
||||| || || ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1522 ATGAAGGCCACTTTCTTTATAACCTACATAATGGTGGACGGATGGGCTGGTGTTGCTGGA 1581
Query 1740 GAGATATTGAGGTTGAAGCCACTCATAATCTATCATCTAAAGAACTCCTTCCTCGTGAGA 1799
|||||| |||||||||| ||| | |||||||||||||| ||||||| |||||| |||| |
Sbjct 1582 GAGATACTGAGGTTGAAACCATTGATAATCTATCATCTCAAGAACTTCTTCCTTGTGAAA 1641
Query 1800 ACCGAAAAAGATAGGGAAGAAGCAACTG-ATCCTGGAACCATAGGATTCAACACTGGTGA 1858
|| || |||||||| ||||| |||| || |||||||||||||||||||||| ||||||||
Sbjct 1642 ACAGAGAAAGATAGAGAAGAGGCAA-TGGATCCTGGAACCATAGGATTCAATACTGGTGA 1700
Query 1859 GCCTCAAATACAACTCTACTTCCTTCTTGGTCTTGTTTACGCAGCAGTTAGCCCCATCCT 1918
|| || ||||||||||||||| |||| ||||| |||||||| || ||||||||||| ||
Sbjct 1701 ACCACAGATACAACTCTACTTCATTCTCGGTCTAGTTTACGCCGCTGTTAGCCCCATTCT 1760
Query 1919 TCTCCCTTTTATCCTCGTCTTCTTCGGCCTG-GCTTTTGTAGTGTACCGTCATCAGGTTA 1977
|| || ||||||||||||||||||| ||| |||| ||| || |||||||||||| |||
Sbjct 1761 CCTTCCATTTATCCTCGTCTTCTTCG-CCTTAGCTTATGTGGTTTACCGTCATCAGATTA 1819
Query 1978 TAAATGTGTATAACCAAAAGTATGAGAGCGCAGG-GAAGTTCTGGCCTGACGTTCACAGG 2036
||||||||||||||||| |||||||||| || | | |||||||||||| ||||| ||
Sbjct 1820 TAAATGTGTATAACCAAGAGTATGAGAGTGCTGCCGC-GTTCTGGCCTGATGTTCATAGA 1878
Query 2037 CGTGTTGTGACCGCATTGGTTGTTTCACAGCTGCTCTTGATGGGTCTT-CTAAGCACCAA 2095
||||| |||| ||| | | || || ||||| || |||||||| || |||||||| ||
Sbjct 1879 CGTGTAGTGATTGCACTAATCGTATCTCAGCTTCTTTTGATGGGA-TTGCTAAGCACGAA 1937
Query 2096 AC-ACGCTTCTAAGTCC-ACTCCTTTGCTGCTTG-TGCTTCC-GTTGCTGACCATCGGGT 2151
|| | ||| || || | ||||| ||||| || | || || || | | ||||| || |
Sbjct 1938 ACGA-GCTGCTC-GTTCGACTCCATTGCTA-TTCATACTGCCTGT-GTTAACCATTGGAT 1993
Query 2152 TCCACAAACACTG-CAAAAACCGTTACCAACCTGCCTTTGTCACATACCCGTTACAGCAG 2210
|||||||| ||| ||| || ||||||||||| |||||||| |||||| |||||| |
Sbjct 1994 TCCACAAATTCTGTCAAGGAC-GTTACCAACCTATCTTTGTCAGATACCCTTTACAG--G 2050
Query 2211 GAAGCCATGATCAAAGATACACTGGACCGTAT-ACGTGAACCAAACTTAAACCTCAAAGC 2269
| || ||| | |||||||| |||| || || | | ||||| || |||||| | ||| |
Sbjct 2051 -ATGCAATGGTTAAAGATACGTTGGAACGCATGA-GAGAACCGAATTTAAACTTGAAAAC 2108
Query 2270 -TTTCCTTCGAGACGCCTACGCCCACCCGGAGTT 2302
|||| ||| | |||| || || || |||| |||
Sbjct 2109 GTTTC-TTCAAAACGCGTATGCACATCCGGTGTT 2141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97587207690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5