BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15440.1 Length=1743 Score E Sequences producing significant alignments: (Bits) Value Ahg355235 jgi|Araly1|355235|fgenesh1_pg.C_scaffold_7002408 2111 0.0 > Ahg355235 jgi|Araly1|355235|fgenesh1_pg.C_scaffold_7002408 Length=1464 Score = 2111 bits (1143), Expect = 0.0 Identities = 1362/1467 (93%), Gaps = 18/1467 (1%) Strand=Plus/Plus Query 76 ATGGCGGC-GACTTCCCCGCGGCCACCACCGTCAACATCCCTAACATCTCAGCAGCCACC 134 |||||||| | ||||||||||| |||||||||||||| ||||| |||| |||||||| || Sbjct 1 ATGGCGGCTG-CTTCCCCGCGGTCACCACCGTCAACACCCCTATCATCGCAGCAGCCTCC 59 Query 135 ATCACCCCCCTCACAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGCTGGCC-GTTGG 193 ||| |||| || ||||||||||||||||||||||||||||||||||| ||||| ||| | Sbjct 60 GTCATCCCCGTCGCAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGTTGGCCGGTT-G 118 Query 194 TTGGACCATTATCGGACCGTTTAG---A-------TTCCAAGGACCCGATAAGTTTTTCC 243 ||||||| || ||||||||||||| | ||||||||||||||||||||||||| Sbjct 119 TTGGACCTTTGTCGGACCGTTTAGATTACTTCTGGTTCCAAGGACCCGATAAGTTTTTCC 178 Query 244 GGACAAGAGCTGAGAAGTATAAGAGCACTGTGTTCCGTACAAATATTCCTCCGACGTTTC 303 ||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 179 GGACAAGGGCTGAAAAGTACAAGAGCACTGTGTTCCGTACAAACATTCCTCCGACGTTTC 238 Query 304 CTTTCTTCGGCAACGTTAACCCTAACATCGTCGCCGTTCTTGACGTCAAGTCTTTTAGCC 363 ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 239 CTTTCTTTGGCGACGTTAACCCTAACATTGTCGCCGTTCTCGACGTCAAGTCTTTTAGCC 298 Query 364 ATCTTTTTGACATGGATCTAGTTGATAAAAGAGATGTTCTCATCGGAGACTTCCGGCCTA 423 |||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 299 ATCTCTTTGACATGGATCTGGTTGATAAAAGAGATGTTCTCATTGGAGACTTCCGGCCTA 358 Query 424 GCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTGAGCCAAAGC 483 |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 359 GCCTTGAGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTTGACACTACCGAGCCAAAGC 418 Query 484 ACGCCAAGATAAAAGGTTTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTAC 543 |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 419 ACGCCAAGATAAAAAGTTTCACTATGGAAATACTAAAACGAAGCTCAAAAGTATGGCTAC 478 Query 544 AAGAGCTTCGTTCAAACCTAAACATTTTCTGGGGAACAATCGAATCCGAAATCT-CCAAA 602 |||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||| Sbjct 479 AAGAGCTTCGTTCAAACCTAAACACTTTCTGGGGAACAATCGAATCCGAAGT-TACCAAA 537 Query 603 AACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGCC 662 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 538 AACGGCGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGTGCC 597 Query 663 TCTCTCGCCGGCGTTGACGCTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACA 722 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 598 TCTCTCGCCGGCGTTGACGTTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACA 657 Query 723 ATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCTAAACTTGGCGTAGTTCCTCAG 782 |||||||||||||||| ||||||||||| ||||| ||||||| ||| | ||||||||| Sbjct 658 CTCAATACTTGGCTTGCATTGCAAGTTATCCCCACCACTAAACTCGGCATTGTTCCTCAG 717 Query 783 CCTCTTGAAGAGATTTTACTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAAT 842 || |||||||||||||| || |||||||||||||| |||||||||||| ||||||||||| Sbjct 718 CCGCTTGAAGAGATTTTTCTCCATACTTGGCCTTACCCTTCTCTCTTAGTCGCCGGAAAT 777 Query 843 TACAAAAAGCTTTACAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAA 902 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TACAAAAAGCTTTGCAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAA 837 Query 903 GAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTTT 962 ||||||||||||||||||||||||||| | ||||| |||||| | || || || |||||| Sbjct 838 GAAGAATTCGGGTTGACCCGAGATGAGACGATTCAGAATCTTTTATTCGTGTTGGGTTTT 897 Query 963 AATGCCTACGGGGGCTTTTCCGTCTTCTTACCTTCTTTGATCGGGAGAATAACCGGCGAC 1022 || || |||||||||||||||||||| ||||||| ||||||||| | ||| |||||||| Sbjct 898 AACGCTTACGGGGGCTTTTCCGTCTTTTTACCTTTTTTGATCGGAAAAATCACCGGCGAT 957 Query 1023 AATTCCGGTTTACAGGAGAGGATTAGAA-CCGAAGTCAGGAGAGTTTGCGGATCCGGGTC 1081 ||||||||| | ||||||||||||| || ||||||||||||||||||||||||||| ||| Sbjct 958 AATTCCGGTCTCCAGGAGAGGATTA-AATCCGAAGTCAGGAGAGTTTGCGGATCCGAGTC 1016 Query 1082 GGATCTTAATTTCAAGACGGTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAAC 1141 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1017 GGATCTTAATTTCAAGACGGTCAACGAAATGGAGCTGGTTAAATCGGTGGTTTACGAAAC 1076 Query 1142 GCTGCGTTTTAGTCCTCCGGTTCCGCTGCAATTCGCACGTGCGAGGAAAGATTTTCAGAT 1201 ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1077 GCTGCGTTTTAATCCTCCGGTTCCTTTGCAATTCGCACGTGCGAGGGAAGATTTTCAGAT 1136 Query 1202 AAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCC 1261 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1137 AAGTTCACACGATGCTGTTTTTGAGGTTAAGAAAGGTGAGCTTCTTTGTGGTTACCAGCC 1196 Query 1262 GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTA 1321 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTT 1256 Query 1322 TGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAAC 1381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 TGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAAC 1316 Query 1382 CGGTACCCCGAGCGCGTCGAACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGC 1441 ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1317 AGGTACACCGAGCGCTTCGAACAAACAGTGTGCAGCTAAGGACATGGTCACTCTCACGGC 1376 Query 1442 TTCCTTGCTCGTTGCCGATTTATTTCTCCGGTATGATACGATTACTGGTGACTCCGGTTC 1501 | |||| || |||||||||||||||||||||||||| || ||||||| ||||||||||| Sbjct 1377 TAGCTTGGTCATTGCCGATTTATTTCTCCGGTATGATTCGGTTACTGGCGACTCCGGTTC 1436 Query 1502 AATTAAAGCTGTTGTTAAAGCTAAATA 1528 ||||||||||||||||||||||||||| Sbjct 1437 AATTAAAGCTGTTGTTAAAGCTAAATA 1463 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65400950665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5