BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15470.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493344 jgi|Araly1|493344|fgenesh2_kg.7__2777__AT4G15470.1 1552 0.0
Ahg490289 jgi|Araly1|490289|fgenesh2_kg.6__3423__AT4G02690.1 76.8 3e-13
> Ahg493344 jgi|Araly1|493344|fgenesh2_kg.7__2777__AT4G15470.1
Length=1030
Score = 1552 bits (840), Expect = 0.0
Identities = 969/1027 (94%), Gaps = 25/1027 (2%)
Strand=Plus/Plus
Query 55 CAACCAGATCTGCTTTCGAAGACGAATC-TAGCTATTAGCCATGGACAAACCGTACGGAT 113
||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct 1 CAACCAGATCTGCTTTCGAAGAC---TCGTAGCTA-TAGCCATGGAGAAACCGTACGGAT 56
Query 114 ACGCGAGCGTGAGCATGAGCGGCATAGATCGTTCCGCCGGAAAGGATATTGATCTTGAGA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ACGCGAGCGTGAGCATGAGCGGCATAGATCGTTCCGCCGGAAAGGATATTGATCTTGAGA 116
Query 174 TGGGAGTCGGAGAAGCGACGCTTTATCCTGGGCTAAGTTACGGCGAGAATCAGCTCCGAT 233
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 117 TGGGAGTCGGAGAAGCGACGCTTTATCCTGGGCTAAGTTATGGCGAGAATCAGCTCCGAT 176
Query 234 GGGGATTTATTCGTAAGGTCTATGGGATTCTCTCAGCTCAGCTTCTTCTTACGACGCTTA 293
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 177 GGGGATTTATTCGTAAGGTCTATGGAATTCTCTCGGCTCAGCTTCTTCTCACGACGCTTA 236
Query 294 TCTCCGCCGTCGTTGTTCTTAATCCTCCTGTTAACGATCTCTTGACCGGATCTCCTGGGA 353
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 237 TCTCCGCCGTCGTTGTTCTTAATCCTCCTGTTAACGATGTCTTAACCGGATCTCCTGGGA 296
Query 354 TTCTTCTCTTCCTCTGCATCGTTCCCTT-CATCTTAATCTGGCCTCTGCACATTTACCAC 412
||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 297 TTCTTCTCTTCCTTTGCATCGT-CCCTTTCATCTTAATCTGGCCTCTACACATTTACCAC 355
Query 413 CAGAAGCATCCTGTTAACCTGATCCTCCTTGCCCTCTTCACTGTTTCATTGAGTTTCACT 472
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 356 CAGAAGCATCCTGTTAACCTTATCCTCCTTGCCCTCTTCACTGTCTCATTGAGTTTCACC 415
Query 473 GTTGGTGTCAGTTGTGCTATGACAGAAGGACGAATTGTGCTACAAGCCTTGATATTGACT 532
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 416 GTTGGTGTCAGTTGTGCTATGACAGAAGGAAGAATTGTGCTTCAAGCCTTGATATTGACT 475
Query 533 CTGTCTGTGGTCGGATCTCTAACCGCATACACTTTCTGGGCTGCAAAGAA-GGGAAAAGA 591
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 476 CTGTCTGTGGTTGGATCTCTAACCGCATACACTTTCTGGGCTGCAAAGAAAGGGAAA-GA 534
Query 592 CTTCAGCTTCCTTGGACCCATTCTCTTCACCAGCCTCATCATTCTTGTAGTGACCAGCTT 651
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 535 CTTCAGCTTCCTTGGACCCATTCTCTTCACCAGCCTCATCATTCTTGTTGTGACCAGCTT 594
Query 652 CATCCAGATGTTCTTCCCTCTTGGCCCGACTTCTGTTGCCGTATACGGAGGATTCAGTGC 711
|||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||
Sbjct 595 CATCCAGATGTTCTTCCCTCTTGGCCCGACTTCTATTGCCATATATGGAGGAATCAGTGC 654
Query 712 CTTGGTATTCTGCGGATACATAGTCTATGATACCGACAACCTCATCAAGCGTTTCACATA 771
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 655 ATTGGTATTCTGCGGATACATAGTCTATGATACCGACAACCTCATAAAGCGTTTCACATA 714
Query 772 TGACGAATACATCCTAGCATCAGTAGCTCTCTACTTGGACATCCTCAATCTCTTCTTGAC 831
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 715 TGACGAATACATCCTAGCATCAGTGGCTCTCTACTTGGACATCCTCAATCTCTTCTTGAC 774
Query 832 CATATTGCGTATACTGAGGCAAGGCGACAACTGAAAGGCATAAAACGATGCTTCAGTGAT 891
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 775 CATATTGCGTATACTGAGGCAAGGTGACAACTGAAAGGCATAAAACGATGCTTCAGTGAT 834
Query 892 GTGATCC-AGTTTATAACTATAAG-AGAATCCAAAAGCCTTTATGTGTGT--ATATCTGA 947
||||||| | |||||||||| ||| |||||||||| |||||||||||||| ||||||||
Sbjct 835 GTGATCCGA-TTTATAACTAAAAGCAGAATCCAAATGCCTTTATGTGTGTGTATATCTGA 893
Query 948 TTTCTGTTTGGAGAATTAAGTAT-ATGATGCTATGTGGTTAAACGATTGATATAAACAAA 1006
|||||||| ||| || | ||| ||||||||||||||||||||||||| || || ||||
Sbjct 894 CTTCTGTTTTGAGTAT-A--TATGATGATGCTATGTGGTTAAACGATTGGTA-AA-CAAA 948
Query 1007 ATCAAGCAAT-GTCGATTTTCAACTTCAAATAAATTTGTTAATTTTGGCGGAA-TTTTGA 1064
|||||| || ||||||||||||||| || ||||||||||||||||||||||| |||| |
Sbjct 949 ATCAAGAAAAAGTCGATTTTCAACTT-AA-TAAATTTGTTAATTTTGGCGGAAGTTTT-A 1005
Query 1065 TGCCTTT 1071
| |||||
Sbjct 1006 TACCTTT 1012
> Ahg490289 jgi|Araly1|490289|fgenesh2_kg.6__3423__AT4G02690.1
Length=1023
Score = 76.8 bits (41), Expect = 3e-13
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 717 TATTCTGCGGATACATAGTCTATGATACCGACAACCTCATCAAGCGTTTCACATATGACG 776
|||||||||||||||||||||||||||| ||||| || ||||| || ||| ||||| |
Sbjct 638 TATTCTGCGGATACATAGTCTATGATACAGACAATCTGATCAAACGACACACGTATGATG 697
Query 777 AATACATCCTAG-CATCAGTAGCTCTCTACTTGGACATCCTCAATCTCTTCTTG 829
| || || | | || | || | |||||| | |||||| |||| |||||||||
Sbjct 698 AGTATATT-TGGGCAGCGGTTTCGCTCTACCTAGACATCATCAACCTCTTCTTG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5