BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15480.1 Length=1716 Score E Sequences producing significant alignments: (Bits) Value Ahg493342 jgi|Araly1|493342|fgenesh2_kg.7__2775__AT4G15480.1 2191 0.0 Ahg946766 jgi|Araly1|946766|scaffold_702995.1 158 2e-37 > Ahg493342 jgi|Araly1|493342|fgenesh2_kg.7__2775__AT4G15480.1 Length=1487 Score = 2191 bits (1186), Expect = 0.0 Identities = 1389/1489 (93%), Gaps = 6/1489 (0%) Strand=Plus/Plus Query 40 aaaaaaTGGGATCCATATCAGAAATGGTGTTCGAAACTTGTCCATCTCCAAACCCAATTC 99 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2 AAAAAATGGGATCCATCTCAGAAATGGTGTTCGAAACTTGTCCATCTCCAAACCCAGTTC 61 Query 100 ATGTAATGCTCGTCTCGTTTCAAGGACAAGGCCACGTCAACCCTCTTCTTCGTCTCGGCA 159 |||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 62 ATGTAATGCTAGTGTCGTTTCAAGGACAAGGCCACGTGAACCCTCTTCTTCGTCTTGGCA 121 Query 160 AGTTAATTGCTTCAAAGGGTTTACTCGTTACCTTCGTTACAACGGAGCTTTGGGGCAAGA 219 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 AGCTCATTGCTTCAAAGGGTTTACTCGTTACCTTCGTTACAACGGAGCTTTGGGGCAAGA 181 Query 220 AAATGAGACAAGCCAACAAAATCGTTGACGGTGAACTTAAACCGGTTGGTTCCGGTTCAA 279 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 182 AAATGAGACAAGCCAACAAGATCGTTGATGGTGAGCTTAAACCGGTTGGTTCCGGTTCAA 241 Query 280 TCCGGTTTGAGTTCTTTGATGAAGAATGGGCAGAGGATGATGACCGGAGAGCTGATTTCT 339 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 242 TCCGGTTTGAGTTCTTTGATGAAGAATGGGCAGATGACGATGACCGGAGAGCTGATTTCT 301 Query 340 CTTTGTACATTGCTCACCTAGAGAGCGTTGGGATACGAGAAGTGTCTAAGCTTGTGAGAA 399 ||||||||||| | |||||||||||| ||||||||||||||||||| || |||||||||| Sbjct 302 CTTTGTACATTTCACACCTAGAGAGCATTGGGATACGAGAAGTGTCGAAACTTGTGAGAA 361 Query 400 GATACGAGGAAGCGAACGAGCCTGTCTCGTGTCTTATCAATAACCCGTTTATCCCATGGG 459 ||||||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||| Sbjct 362 GATACGAGGAAGCTAACGAGCCTGTCTCGTGTCTGATTAATAATCCGTTTATTCCATGGG 421 Query 460 TCTGCCACGTGGCGGAAGAGTTCAACATTCCTTGTGCGGTTCTCTGGGTTCAGTCTTGTG 519 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 422 TCTGCCACGTGGCGGAAGAGTTCAACATTCCTTGTGCGGTTCTTTGGGTTCAGTCTTGTG 481 Query 520 CTTGTTTCTCTGCTTATTACCATTACCAAGATGGCTCTGTTTCATTCCCTACGGAAACAG 579 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 482 CTTGTTTCTCTGCTTATTACCATTACCAAGATGGCTCTGTTTCTTTCCCGACGGAAACAG 541 Query 580 AGCCTGAGCTCGATGTGAAGCTTCCTTGTGTTCCTGTCTTGAAGAACGACGAGATTCCTA 639 ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 542 AGCCTGACCTCGATGTTAAGCTTCCTTGTGTTCCTGTCTTGAAGCACGACGAGATTCCTA 601 Query 640 GCTTTCTCCATCCTTCTTCTAGGTTCACGGGTTTTCGACAAGCGATTCTTGGGCAATTCA 699 ||||||||||||||||| || |||| | ||||| ||| |||| |||||||| ||||||| Sbjct 602 GCTTTCTCCATCCTTCTACTCCGTTCGCCGGTTTACGAGAAGCCATTCTTGGACAATTCA 661 Query 700 AGAATCTGAGCAAGTCCTTCTGTGTTCTAATCGATTCTTTTGACTCATTGGAACAAGAAG 759 |||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| ||||||| Sbjct 662 AGAATCTGAGAAAGTCCTTCTGTGTTTTAATCGATTCTTTCGACGCATTGGAGCAAGAAG 721 Query 760 TTATCGATTACATGTCAAGTCTTTGTCCGGTTAAAACCGTTGGACCGCTTTTCAAAGTTG 819 | || |||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 722 TGATTGATTACATGTCAAGGCTTTGTCCGGTTAAAACCGTTGGACCGCTTTTCAAAGTGG 781 Query 820 CTAGGA-CAGTTACTTCTGACGTAAGCGGTGACATTTGCAAATCAACAGATAAATGCCTC 878 || | | | |||||||| ||||||| ||||||||||||||| | || |||||||||||| Sbjct 782 CT-GAAACCGTTACTTCCAACGTAAGTGGTGACATTTGCAAACCGACGGATAAATGCCTC 840 Query 879 GAGTGGTTAGACTCGAGGCCTAAATCGTCAGTTGTCTACATTTCGTTCGGGACAGTTGCA 938 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 841 GAGTGGTTAGACTCGAGGCCTAAATCGTCCGTTGTCTACATTTCGTTCGGGACAGTTGCG 900 Query 939 TATTTGAAGCAAGAACAGATCGAAGAGATCGC-TCACGGAGTTTTGAAGTCGGGTTTATC 997 ||||||||||||||||||||||| |||||||| | | ||||||||||| ||||||||||| Sbjct 901 TATTTGAAGCAAGAACAGATCGATGAGATCGCAT-ATGGAGTTTTGAAATCGGGTTTATC 959 Query 998 GTTCTTGTGGGTGATTAGACCTCCACCACACGATCTGAAGGTCGAGACACATGTCTTGCC 1057 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 960 GTTCTTGTGGGTGATTAGACCTCCACCGCACGATCTAAAGGTCGAGACACATGTCTTGCC 1019 Query 1058 TCAAGAACTTAAAGAGAGTAGTGCTAAAGGTAAAGGGATGATTGTGGATTGGTGCCCACA 1117 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| Sbjct 1020 TCAAGAACTTAAAGAGAGTAGTGATAAAGGTAATGGGATGATTGTGGATTGGTGTCCACA 1079 Query 1118 AGAGCAAGTCTTGTCTCATCCTTCAGTGGCATGCTTCGTGACTCATTGTGGATGGAACTC 1177 |||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1080 AGAGAAAGTCTTGGGTCATCCTTCAGTGGCATGTTTCGTGACACATTGTGGATGGAACTC 1139 Query 1178 GACAATGGAATCTTTGTCTTCAGGTGTTCCGGTGGTTTGTTGTCCGCAATGGGGAGATCA 1237 ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1140 GACGATGGAGTCTTTGTCTTCGGGTGTTCCGGTGGTTTGTTGTCCGCAATGGGGAGATCA 1199 Query 1238 AGTGACTGATGCAGTGTATTTGATCGATGTTTTCAAGACCGGGGTTAGACTAGGCCGTGG 1297 ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1200 AGTGACTGACGCGGTGTATTTGATCGATGTTTTTAAGACCGGAGTTAGACTAGGCCGTGG 1259 Query 1298 AGCGACCGAGGAGAGGGTAGTGCCAAGGGAGGAAGTGGCGGAGAAGCTTTTGGAAGCGAC 1357 |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AGCGGCAGAGGAGAGGGTTGTGCCAAGGGAGGAAGTGGCGGAGAAGCTTTTGGAAGCGAC 1319 Query 1358 AGTTGGGGAGAAGGCAGAGGAGTTGAGAAAGAACGCTTTGAAATGGAAGGCGGAGGCGGA 1417 | ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1320 AATTGGGGAGAAGGCAGAGGAGTTGAGGAAGAATGCTTTGAAATGGAAGGCGGAGGCGGA 1379 Query 1418 AGCAGCGGTGGCTCCAGGAGGTTCGTCGGATAAGAATTTTAGGGAGTTTGTGGAGAAGTT 1477 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 AGCAGCGGTGGCTCCCGGTGGTTCGTCGGATAAGAATTTTAGGGAGTTTGTGGAGAAGTT 1439 Query 1478 AGGTGC-GGGAGTAACGAAGACTAAAGATAATGGATACTAGGCAAAAGT 1525 ||| | ||||||| ||||| ||| || || ||| ||||||| ||||| Sbjct 1440 AGG-GATGGGAGTATCGAAGGTTAAGGAGAACGGACACTAGGCTAAAGT 1487 > Ahg946766 jgi|Araly1|946766|scaffold_702995.1 Length=1177 Score = 158 bits (85), Expect = 2e-37 Identities = 166/204 (81%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 1101 GTGGATTGGTG-CCCACAAGAGCA-AGTCTTGTCTCATCCTTCAGTGGCATGCTTCGTGA 1158 ||||| ||||| ||| |||||| | ||| ||| |||||||| || | || |||||| | | Sbjct 978 GTGGAATGGTGTCCC-CAAGAG-AGAGTGTTGGCTCATCCTGCAATTGCTTGCTTCTTAA 1035 Query 1159 -CTCATTGTGGATGGAACTCGACAATGGAATCTTTGTCTTCAGGTGTTCCGGTGGTTTGT 1217 | || || |||||||||||||||||||| |||| |||| || || || || |||||| Sbjct 1036 GC-CACTGCGGATGGAACTCGACAATGGAGGCTTTAACTTCCGGAGTCCCTGTTGTTTGT 1094 Query 1218 TGTCCGCAATGGGGAGATCAAGTGACTGATGCA-GTGTATTTGATCGATGTTTTCAAGAC 1276 | ||||||||||||||||||||||||||||| | ||||| ||| | |||||||||||| | Sbjct 1095 TTTCCGCAATGGGGAGATCAAGTGACTGATG-ATGTGTACTTGGTTGATGTTTTCAAG-C 1152 Query 1277 CGGG-GTTAGACTAGGCCGTGGAG 1299 | | || ||||||||||| |||| Sbjct 1153 CATGAGTGAGACTAGGCCGCGGAG 1176 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64372514050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5