BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15550.1 Length=1738 Score E Sequences producing significant alignments: (Bits) Value Ahg493327 jgi|Araly1|493327|fgenesh2_kg.7__2760__AT4G15550.1 2135 0.0 > Ahg493327 jgi|Araly1|493327|fgenesh2_kg.7__2760__AT4G15550.1 Length=1428 Score = 2135 bits (1156), Expect = 0.0 Identities = 1342/1432 (94%), Gaps = 11/1432 (1%) Strand=Plus/Plus Query 27 ATGGCCAACAAC---AATTCCAACTCTCCCACCGGTCCACACTTTCTATTCGTAACATTT 83 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCAACAACAATAATTCAAACTCTCCCACCGGTCCACACTTTCTATTCGTAACATTT 60 Query 84 CCAGCCCAAGGTCACATCAACCCATCTCTCGAGCTAGCCAAACGCCTCGCCGGAACAATC 143 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 CCAGCACAAGGTCACATCAACCCATCTCTCGAGCTAGCCAAACGCCTCGCCGGAACCATC 120 Query 144 TCTGGTGCTCGAGTCACCTTCGCCGCCTCAATCTCTGCCTACAACCGCCGCATGTTCTCT 203 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TCCGGTGCTCGAGTCACCTTCGCCGCCTCAATCTCCGCCTACAACCGCCGCATGTTCTCT 180 Query 204 AC-AGAAAACGTCCCCGAAACCCTAATCTTCGCTACCTACTCCGATGGCCACGACGACGG 262 | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 -CAAGAAAACGTCCCTGAAACCCTAATCTTCGCTACCTACTCCGATGGCCACGACGACGG 239 Query 263 TTTCAAATCCTCTGCTTACTCCGAC-AAATCTCGTCAAGACGCCACTGGAAACTTCATGT 321 ||||||||||||| ||| ||||| | ||||| |||||||||||||| ||||||||||||| Sbjct 240 TTTCAAATCCTCTACTTCCTCCG-CTAAATCCCGTCAAGACGCCACCGGAAACTTCATGT 298 Query 322 CTGAGATGAGACGACGTGGCAAAGAGACACTAACCGAACTAATCGAAGATAACCGGAAAC 381 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 299 CTGAGATGAGACGACGTGGCAAGGAGACACTAACCGAACTAATCGAAGATAACCGGAATC 358 Query 382 AAAACAGGCCTTTTACTTGCGTGGTTTACACGATTCTCCTCACTTGGGTCGCTGAGCTAG 441 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AAAACCGGCCTTTCACTTGCGTGGTTTACACGATTCTCCTCACTTGGGTCGCTGAGCTAG 418 Query 442 CGCGTGAGTTTCATCTTCCTTCTGCTCTTCTTTGGGTCCAACCAGTAACAGTCTTCTCCA 501 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 419 CGCGTGAGTTTCACCTTCCTTCTGCTCTTCTTTGGGTCCAACCTGTAACAGTCTTCTCCA 478 Query 502 TTTTTTACCATTACTTCAATGGCTACGAAGATGCAATCTCAGAGATGGCTAATACCCCCT 561 ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| | Sbjct 479 TTTTTTACCATTACTTCAATGGCTACGAAGAAGCTATCTCAGAGATGGCTAATAACCCAT 538 Query 562 CTAGTTCTATTAAATTACCTTCTCTGCCACTGCTTACTGTCCGTGATATTCCTTCTTTCA 621 ||||||||||||||||||| ||||||||||| || | | |||||||| ||||||| |||| Sbjct 539 CTAGTTCTATTAAATTACCGTCTCTGCCACTACTCAGTCTCCGTGATCTTCCTTCATTCA 598 Query 622 TTGTCTCTTCCAATGTCTACGCGTTTCTTCTACCCGCGTTTCGAGAACAGATTGATTCAC 681 | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 599 TGGTCTCTTCCAATGTCTACGCGTTTCTTCTACCGGCTTTTCGAGAACAGATTGATTCAC 658 Query 682 TGAAGGAAGAAATAAACCCTAAGATCCTCATCAACACTTTCCAAGAGCTTGAGCCAGAAG 741 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 659 TGAAGGAAGAAGCAAACCCTAAGATCCTCATCAACACTTTCCAAGAGCTTGAACCAGAAG 718 Query 742 CCATGAGCTCGGTTCCAGATAATTTCAAGATTGT-CCCTGTCGGTCCGTTACTAACGTTG 800 |||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| ||| Sbjct 719 CCATGAGCTCGGTTCCAGATAATTTCAAGATTGTTCCC-GTTGGTCCGTTATTAACCTTG 777 Query 801 AGAACGGATTTTTCGAGTCGCGGTGAATACATAGAGTGGTTGGATACTAAAGCGGATTCG 860 ||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 778 AGAACCGATTCATCGAGTCACGGTGAATACATAGAGTGGTTGGATACAAAAGCGGATTCG 837 Query 861 TCTGTGCTTTATGTTTCGTTCGGGACGCTTGCCGTGTTGAGCAAGAAACAGCTTGTGGAG 920 ||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||| Sbjct 838 TCTGTGCTTTACGTTTCGTTTGGGACACTTGCCGTGTTGACCAAGAAACAGCTTGTGGAG 897 Query 921 CTTTGTAAAGCGTTGATACAAAGTCGGAGACCATTCTTGTGGGTGATTACGGATAAGTCG 980 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 898 CTTTGTAAAGCGTTGATACAGAGTCGGAGACCGTTCTTGTGGGTGATTACGGACAAGTCG 957 Query 981 TACAGAAATAAAGAAGATGAGCAAGAGAAGGAAGAAGATTGCATAA-GTAGTTTCAGAGA 1039 || |||| ||||||||||||||||||||| || ||||||||||||| | ||||||||||| Sbjct 958 TATAGAAGTAAAGAAGATGAGCAAGAGAAAGAGGAAGATTGCATAAAG-AGTTTCAGAGA 1016 Query 1040 AGAGCTCGATGAGATAGGAATGGTGGTTTCATGGTGTGATCAGTTTAGGGTTTTGAATCA 1099 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1017 AGAGCTTGATGAGATAGGAATGGTGGTTTCTTGGTGCGATCAGTTTAGGGTTTTGAATCA 1076 Query 1100 TAGATCGATAGGTTGTTTCGTGACGCATTGCGGGTGGAACTCTACGCTGGAGAGCTTGGT 1159 |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| Sbjct 1077 TAGATCGATAGGTTGTTTCGTGACTCATTGCGGGTGGAACTCGACGTTGGAGAGCTTGGT 1136 Query 1160 TTCAGGAGTTCCGGTGGTGGCGTTTCCGCAATGGAATGATCAGATGATGAACGCGAAGCT 1219 || |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1137 CTCGGGAGTTCCGGTGGTGGCGTTTCCGCAGTGGAATGATCAGATGACGAACGCGAAGCT 1196 Query 1220 TTTAGAAGATTGTTGGAAAACAGGTGTAAGAGTGATGGAGAAGAAGGAAGAAGAAGGAGT 1279 |||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| Sbjct 1197 TTTAGAAGATTGTTGGAAGACAGGTGTGAGAGTGATGGAGAAGAAGGAAGAGGACGGAGC 1256 Query 1280 TGTGGTGGTGGATAGTGAGGAGATACGGCGGTGCATTGAGGAAGTTATGGAAGACAAGGC 1339 ||||||||||| |||| ||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1257 AGTGGTGGTGGAGAGTGGGGAGATACGGCGGTGCATTGAGGAAGTGATGGAGGAGAAGGC 1316 Query 1340 GGAGGAGTTTAGAGGAAATGCCACGAGGTGGAAGGATTTAGCGGCGGAGGCTGTGAGAGA 1399 |||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| Sbjct 1317 GGAGGAGTTTAGAGGAAACGCGGCGAGGTGGAAGGATTTAGCGGCGGAGGCGGTGAGAGA 1376 Query 1400 AGGAGGCTCTTCCTTTAATCATCTCAAAGCTTTTGTCGATGAGCACATGTGA 1451 ||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1377 AGGTGGCTCTTCCTTTAATCATCTCAAAGCTTTTGCCGATGAGCACATGTGA 1428 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65210499440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5