BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15563.1 Length=993 Score E Sequences producing significant alignments: (Bits) Value Ahg329955 jgi|Araly1|329955|fgenesh1_pm.C_scaffold_7002182 721 0.0 > Ahg329955 jgi|Araly1|329955|fgenesh1_pm.C_scaffold_7002182 Length=504 Score = 721 bits (390), Expect = 0.0 Identities = 468/506 (92%), Gaps = 4/506 (1%) Strand=Plus/Plus Query 312 ATGCAACACAAGGAAATGGCATCAAGAGCTTCCGAGGTGATTAAATATGTGACTAAGT-C 370 ||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||| | Sbjct 1 ATGCAGCACAAGGAAATGGCATCTAGAGCTTATGAGGTGATTACATATGTGACTAA-TAG 59 Query 371 TCCTGCTACGTTGTCTTTAGAGGCAGGTATATATCTGCACGCGGTTGAAACCATGAGCTC 430 |||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||||||| Sbjct 60 TCCTGCTACGTTGTCTCTAGAGGCCGGTAAATATCTGCAGGCAGTTGAAACCATGAGCTC 119 Query 431 GATGCGGTTTGGATTTCAAGATGTGGAGTTATTTTTCTTCAAACCAAACTTAAGTGTGCT 490 ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 120 GATGCGGTTAGGATTTCAAGATGTGGAGTTATTTCTCTTCAAACCAAACTTGAGTGTGCT 179 Query 491 GCTCAACCTCATTGGACTCATTTACTGCATACAACACTTGAAACCGCGGCGAGAGCAAGT 550 |||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||| | Sbjct 180 GCTCAATCTCATTGGACTCATCTACTGCATACAACACTTGAAACCGTTGCGAGATCAAAT 239 Query 551 CGTGGATGTGCTA-AGGCAATGTGGAATCTCAGAGCAGCTAGTTTGGGTGAAATGGTTAA 609 | |||||| |||| | || ||||||||||||| ||||||||||||||||||||||||| | Sbjct 240 CTTGGATGCGCTACA-GCGATGTGGAATCTCACAGCAGCTAGTTTGGGTGAAATGGTTGA 298 Query 610 CGTTAGGTCGATGGTCAGGTGGGAGTCGAATGAGAGACGACATCGTGTCGCGTCAGGTCT 669 ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 299 CGTTAGGTCGATGGTCAGGTGGGAGAAGAATGAGAGACGAAATCGTGTCGCGTCAGGTCT 358 Query 670 CTCTAGTCGATGTTGTAACAGGGAAAGAAGAAACGGTTCTACGAGTGCTTCAACGAGGAG 729 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 359 CTCTAGTCGATGTTGTAACAGGGAAAGAAGAGACGGTTCTACGAGTGCTTCAACGAGGAG 418 Query 730 TTGTTCACGAAGTTCTACGTGTTTGTATCTCAACCGTTGATCTTGCCTGTGCACCTTGCA 789 ||||||||||||||||||| ||||||||||| |||||||||||||| ||| | ||||||| Sbjct 419 TTGTTCACGAAGTTCTACGCGTTTGTATCTCGACCGTTGATCTTGCGTGTACGCCTTGCA 478 Query 790 GCAGTAGCACCATCAGAAACTACTAA 815 |||||||||||||||||||||||||| Sbjct 479 GCAGTAGCACCATCAGAAACTACTAA 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36902983656 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5