BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15620.1
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493323 jgi|Araly1|493323|fgenesh2_kg.7__2756__AT4G15620.1 1026 0.0
> Ahg493323 jgi|Araly1|493323|fgenesh2_kg.7__2756__AT4G15620.1
Length=752
Score = 1026 bits (555), Expect = 0.0
Identities = 646/689 (94%), Gaps = 10/689 (1%)
Strand=Plus/Plus
Query 97 AATGGAACACGAGGGCAAGAACAACATGAATGGTATGGAGATGGAGAAAGGAAAGAGAGA 156
|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 66 AATGAAACACGAGGGCAAGAACAATATGAATGGGATGGAGATGGAGAAAGGAAAGAGAGA 125
Query 157 GCTTGGGTCAAGAAAAGGAGTTGAGTTAACTATGAGAGTGTTGGCTTTGATCCTAACAAT 216
| |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 126 GAGTGGGTCGAGAAAAGGAGTTGAGTTAACGATGAGAGTGTTGGCTTTGGTCCTAACAAT 185
Query 217 GGCGGCTGCAACAGTACTTGGTGTCGCAAAGCAAACAAAGGTTGTGTCTATTAAGCTTAT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GGCGGCTGCAACAGTACTTGGTGTCGCAAAGCAAACAAAGGTTGTGTCTATTAAGCTTAT 245
Query 277 TCCCACTTTGCCTCCTCTTGATATCACTACTACCGCCAAAGCCTCTTACTTGTCGGCATT 336
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 246 TCCCGCTTTGCCTCCTCTTGATATCACTACAACCGCCAAAGCCTCTTACTTGTCGGCCTT 305
Query 337 TGTGTACAACATTTCTGTGAACGCTATAGCTTGCGGTTACACGGCGATCTCGATAGCGAT 396
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 306 TGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACAGCGATCTCGATAGCGAT 365
Query 397 TCTGATGATCAGCAGGGGAAGAAGAAGCAAGAAGTTGTTAATGGTGGTTTTGCTAGGAGA 456
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 366 TCTGATGATCAGTAGGGGAAGAAGAAGCAAAAAGTTGTTAATGGCGGTTTTGCTAGGAGA 425
Query 457 TCTAGTGATGGTGGCTTTGCTGTTTTCCGGCACTGGAGCCGCCAGCGCAATTGGGCTAAT 516
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 426 TCTAGTAATGGTGGCTTTGCTGTTTTCAGGCACCGGAGCCGCCAGCGCAATTGGGCTAAT 485
Query 517 GGGTTTACATGGGAACAAGCATGTCATGTGGAAGAAAGTTTGTGGCGTTTTTGGAAAATT 576
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 486 GGGTTTGCAAGGGAACAAGCATGTTATGTGGAATAAAGTTTGTGGCGTTTTTGGAAAATT 545
Query 577 CTGTCACCGAGCTGCTCCTTCGCTTCCTCTCACTCTTCTTGCTGCAGTTGTGTTTATGTT 636
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 546 CTGTCACCGAGCTGCTCCTTCGCTTCCTCTCACTTTTCTTGCTGCAGTTGTGTTTATGTT 605
Query 637 TCTTGTTGTTCTTGACGCTATTAAGCTTCCTTAATTATTAATTGTTT-CTG-TTCTTGTC 694
||||||||||||||| |||||||||||||| ||||| | | || ||| ||| ||||||||
Sbjct 606 TCTTGTTGTTCTTGATGCTATTAAGCTTCCCTAATT-T-ACTTTTTTTCTGCTTCTTGTC 663
Query 695 GTTTTGTGTGATGTAAAA-TAA---C-T-ATCAACAATCATGTAATTGTCTATTGCTTCT 748
|||| ||||||||||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 664 GTTTCGTGTGATGTAAAAATAAAATCATTATCAACAATCATGTAATTGTCTATTGCTTCT 723
Query 749 AATGTTTTATCACATCGTTTTCTATGGTG 777
||||||||| || ||||||||||||||||
Sbjct 724 AATGTTTTAGCAAATCGTTTTCTATGGTG 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29621506509
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5