BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15700.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 749 0.0 Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 449 7e-126 Ahg946741 jgi|Araly1|946741|scaffold_702970.1 448 2e-125 Ahg946744 jgi|Araly1|946744|scaffold_702973.1 440 4e-123 Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 433 7e-121 Ahg946739 jgi|Araly1|946739|scaffold_702968.1 363 9e-100 > Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 Length=487 Score = 749 bits (405), Expect = 0.0 Identities = 460/487 (94%), Gaps = 1/487 (0%) Strand=Plus/Plus Query 1 GTCACTTCTCATTTTCACCCAAATATATCAATAATCTCTCTATAAGTTATCTAGTTTTCC 60 |||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| Sbjct 1 GTCACTTCTCATCTTCACCCAAAGATATCATTAATCTCTTTATAAGTTATCTAGTTTTCC 60 Query 61 CATATTCATCTCTAATCTAGCATTTTGACCAAACACACCTATTTTTCTCCTTTGCAAGAC 120 ||| || |||||||||||||||| |||||||||||||||||||||| |||||||||| || Sbjct 61 CATTTTGATCTCTAATCTAGCATCTTGACCAAACACACCTATTTTTATCCTTTGCAATAC 120 Query 121 AGTTTTCAAATAT-CTATCACGTTATATTACTAATGGAGAATCTACAAAAGATGATCTCC 179 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 121 GGTTTTCAAATATCCTATCACGTTATAACACTAATGGAGAATCTACAAAAGATGATATCC 180 Query 180 GAGAAGTCGGTAGTGATCTTTAGCAAGAACTCTTGCTGCATGTCTCACACAATCAAGACT 239 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 GAGAAATCGGTAGTGATCTTTAGCAAGAACTCTTGTTGCATGTCTCACACAATCAAGACT 240 Query 240 CTCTTCTTAGACCTTGGCGTGAACCCGACGATCTATGAACTCGATGAGATTAGCAGAGGA 299 |||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||| Sbjct 241 CTCTTCTTAGACTTTGGCATGAACCCGACGATATATGAACTCGATGAGATTAACAGAGGA 300 Query 300 AAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACAGTGCCAGTGGTGTTC 359 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 301 AAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTC 360 Query 360 ATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCC 419 |||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 361 ATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTGAATCGTTCT 420 Query 420 CTTGTTCCAATGCTTAAGCGCGCTGGAGCTTTATGGCTTTGACTTCAAAATAAATGGAAT 479 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 421 CTTGTTCCAATGCTTAAGCGCGCTGGAGCATTATGGCTTTGACTTCAAAATAAATGGGAT 480 Query 480 TGCAAAT 486 ||||||| Sbjct 481 TGCAAAT 487 > Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 Length=589 Score = 449 bits (243), Expect = 7e-126 Identities = 310/343 (90%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 137 TCACGTTATATTACTAATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGAT 196 |||| ||||| || |||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 96 TCACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGAT 155 Query 197 CTTTAGCAAGAACTCTTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGG 256 ||||||||| ||||| || |||||||||||||||||||||||||||||| ||||| |||| Sbjct 156 CTTTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGG 215 Query 257 CGTGAACCCGACGATCTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGC 316 |||||||| || |||||||| || |||||||| | ||||||||||||||||||||| || Sbjct 216 TGTGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGC 275 Query 317 ATTGGCTCAGCTCGGGTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 376 |||||||||||| || |||||||| || |||||||||||||||||||||||||||||||| Sbjct 276 ATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 335 Query 377 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAA 436 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct 336 TGGTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA 395 Query 437 GCGCGCTGGAGCTTTATGGCTTTGACTTCAAAATAAATGGAAT 479 ||||| |||||| ||||||||||| ||||||||||| ||||| Sbjct 396 GCGCGTTGGAGCACTATGGCTTTGATTTCAAAATAAA-GGAAT 437 > Ahg946741 jgi|Araly1|946741|scaffold_702970.1 Length=353 Score = 448 bits (242), Expect = 2e-125 Identities = 298/326 (91%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211 ||||||||| ||||||||||||||| | |||||||| ||||| || |||||||||||||| Sbjct 23 AATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTTAGCAAGAACTC 82 Query 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271 ||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct 83 GTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTGAACCCTACGAT 142 Query 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331 |||||| ||||| ||||| | |||||||| |||||||||||| ||||||||||||||||| Sbjct 143 CTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 202 Query 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391 |||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 203 GTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 262 Query 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451 ||||||||||||||||||||| ||||| || |||||||||||||| || |||||||| || Sbjct 263 AGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAACGTGCTGGAGCATT 322 Query 452 ATGGCTTTGACTTCAAAATAAATGGA 477 |||||||| ||||||||||||||||| Sbjct 323 ATGGCTTTAACTTCAAAATAAATGGA 348 > Ahg946744 jgi|Araly1|946744|scaffold_702973.1 Length=350 Score = 440 bits (238), Expect = 4e-123 Identities = 301/331 (91%), Gaps = 5/331 (2%) Strand=Plus/Plus Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 21 AATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAATTC 80 Query 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 TTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 140 Query 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331 |||||| | || ||||| | ||||||||| ||| ||||||||||||| |||||||| || Sbjct 141 CTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTCAGCTTGG 200 Query 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 CTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 260 Query 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451 ||||||||||||||||||||| || || || ||||||||||||| |||| ||| ||||| Sbjct 261 AGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCTTT 320 Query 452 ATGGCTTTGACTTCAA-A--ATAAATGGAAT 479 |||||||||| || || | ||||| ||||| Sbjct 321 ATGGCTTTGA-TTAAATATTATAAA-GGAAT 349 > Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 Length=580 Score = 433 bits (234), Expect = 7e-121 Identities = 298/329 (91%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211 ||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 57 AATGGAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTC 116 Query 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271 |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 117 TTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGAT 176 Query 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331 ||||||||| || ||||| | ||| ||||| ||||||||||| ||||||||||| || || Sbjct 177 CTATGAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGG 236 Query 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 296 Query 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451 ||||||||||||||||||||| || || || ||||||||||||| |||||||| ||||| Sbjct 297 AGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTT 356 Query 452 ATGGCTTTGACTTCAAA-ATAAATGGAAT 479 |||||||||||| ||| ||||| ||||| Sbjct 357 ATGGCTTTGACT--AAATATAAA-GGAAT 382 > Ahg946739 jgi|Araly1|946739|scaffold_702968.1 Length=350 Score = 363 bits (196), Expect = 9e-100 Identities = 274/312 (88%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTT-AGCAAGAACT 210 ||||||||| ||||||| |||| ||| ||||||| | || ||||| ||| || ||||| | Sbjct 21 AATGGAGAAGCTACAAACGATGGTCTACGAGAAGCCTGTGGTGAT-TTTCAGTAAGAATT 79 Query 211 CTTGCTGCATGTCTCACACAATCAAGACTCTCTTC-TTAGACCTTGGCGTGAACCCGACG 269 | ||||||||||||||||||||||||||||||||| || ||| |||| |||||||| ||| Sbjct 80 CGTGCTGCATGTCTCACACAATCAAGACTCTCTTCCTT-GACTTTGGTGTGAACCCAACG 138 Query 270 ATCTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTC 329 || ||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||| ||| Sbjct 139 ATTTATGAGCTCGACGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAACTC 198 Query 330 GGGTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAAT 389 || ||||||||||| || |||||||||||||||||||||||||| || |||||||||||| Sbjct 199 GGCTGCAGCCCGACCGTACCAGTGGTGTTCATAGGAGGGCAGCTCGTAGGTGGAGCCAAT 258 Query 390 CAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCT 449 ||||||||||| ||||||||||| || || || || |||||||||||||||| |||||| Sbjct 259 CAAGTCATGAGCCTCCATCTCAATCGTTCTCTCGTCCCAATGCTTAAGCGCGTTGGAGCG 318 Query 450 TTATGGCTTTGA 461 |||||| ||||| Sbjct 319 TTATGGGTTTGA 330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18162060364 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5