BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15780.1 Length=932 Score E Sequences producing significant alignments: (Bits) Value Ahg946720 jgi|Araly1|946720|scaffold_702949.1 1142 0.0 > Ahg946720 jgi|Araly1|946720|scaffold_702949.1 Length=709 Score = 1142 bits (618), Expect = 0.0 Identities = 676/704 (96%), Gaps = 3/704 (0%) Strand=Plus/Plus Query 52 ATACTCGGTGGCGACTCAAAATGGGTCAAGAATCGTTTATCTATAGCTTCGTCGCCAGAG 111 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 2 ATACTCGGTGGCGACTC-AAATGGGTCAAGAATCGTTTATCTACAGCTTCGTCGCCAGAG 60 Query 112 GAACTATGATCCTCGCCGAGTATACCGAATTCACAGGCAATTTCCCGTCTATTGCTGCTC 171 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 GCACTATGATCCTCGCCGAGTATACCGAATTCACCGGCAATTTCCCGTCTATTGCTGCTC 120 Query 172 AGTGTCTCCAGAAGCTTCCGTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 231 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGTGTCTCCAGAAGCTTCCTTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 180 Query 232 ATACCTTCAATTTCCTTGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 291 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATACCTTCAATTTCCTCGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 240 Query 292 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGTGAAAG-CTGATTTCAAGAAGAGA 350 ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| Sbjct 241 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGT-AAGGGCTGATTTCAAGAAGAGA 299 Query 351 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTCAACAAGGAGTTCGGGCCG 410 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 300 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTAAACAAGGAATTCGGGCCG 359 Query 411 GTGATGAAGGAACACATGAATTATATTGTTGACCATGCAGAGGAGATTGAAAAACTAATA 470 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 360 GTGATGAAGGAACACATGAATTATATTGTAGACCATGCAGAGGAAATTGAAAAACTAATA 419 Query 471 AAAGTCAAGGCTCAGGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCA 530 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AAAGTCAAGGCTCAAGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCG 479 Query 531 ATCGACAGAGGGGAAAATCTAACAGTTCTTACTGACAAGACCGAGAATCTACGCTCTCAG 590 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 480 ATCGACAGAGGGGAAAATCTAACGGTTCTTACTGACAAAACCGAGAATCTACGCTCTCAG 539 Query 591 GCGCGGGAATACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 650 || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GCACAGGAGTACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 599 Query 651 AAGATAAAACTGGTGGTTCTTGGGATCTTGCTACTACTTGTTCTCATAATCTGGATATCG 710 ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 600 AAGATAAAACTTGTGGTTCTCGGGATCTTGCTACTATTTGTTCTCATAATCTGGATATCG 659 Query 711 GTTTGTCATGGATTTAATTGCACGGATTGAAGACACAACAAATT 754 |||||||| || || |||||||||||||||||| ||||||||| Sbjct 660 GTTTGTCACGGGTTCAATTGCACGGATTGAAGATGCAACAAATT 703 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34577485719 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5