BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15810.1
Length=2757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355185 jgi|Araly1|355185|fgenesh1_pg.C_scaffold_7002358 1256 0.0
> Ahg355185 jgi|Araly1|355185|fgenesh1_pg.C_scaffold_7002358
Length=3462
Score = 1256 bits (680), Expect = 0.0
Identities = 937/1059 (88%), Gaps = 26/1059 (2%)
Strand=Plus/Plus
Query 424 GAAGAGGTGAGAATGAACTATTCAGATAAATTAGATGATGGTTTGA-TGTCCTTTGGGAA 482
||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||
Sbjct 733 GAAGAGGTGAGAATGAACTATTCAGATGAATTTGATGATGGTTT-AGTGTCCTTTGGGAA 791
Query 483 TATTGAAGAATCAAGTCTC-G-G-TGTTCCACCAGAAGGTTCTAGTGATTTTATGGCAGA 539
|| ||||||||| |||||| | | ||||||||||| ||||| || |||||||| ||||||
Sbjct 792 TAGTGAAGAATCGAGTCTCGGTGTTGTTCCACCAGGAGGTTTTAATGATTTTAAGGCAGA 851
Query 540 AAATGAAGGGAACTCTAGTGAGGCGAGTATAGAATTGGGTCAAAATTTCAAGCAACTCAT 599
|| |||||||||||||| |||||| ||||| ||| ||||||||| |||||||||||| |
Sbjct 852 AACTGAAGGGAACTCTATTGAGGCAAGTATGGAAGTGGGTCAAAGTTTCAAGCAACTTTT 911
Query 600 CGAGAAAGGGGATAG-TAAAAGTACCATCAACAAGGAGGATAGTG-GTGGTAGCATTCAT 657
|||| |||| | | | |||| ||||||| |||||||||| | | ||||||||| | ||
Sbjct 912 GGAGACTGGGG-TTGTTCAAAGAACCATCATCAAGGAGGAT-GGGAGTGGTAGCAATAAT 969
Query 658 GAATTTGACGCATTGATGA-AGCCAAGTGATGTAGAAAGAGTAGAAGATAGTGCAGTTGA 716
||||| ||||||||||||| | || ||||| |||||||||||||||||||||||||||
Sbjct 970 GAATTCGACGCATTGATGATA-TTAAATGATGCAGAAAGAGTAGAAGATAGTGCAGTTGA 1028
Query 717 ATTAGCAAAAATGGGAATGAATGATAAACCAGAATACGCAGGTTCTAATATAGGTGAACT 776
||||| | |||||| ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1029 ATTAGTAGAAATGGTAATGACTGATAAACCAGAATACGTAGGTTCTAATACAGGTGAACT 1088
Query 777 TGTATCCATAGAGGAAGTTATGGTACAAGAGAAATCTTCTGACAATGTGTTAGTGTCTTT 836
||| || | |||||||| ||||||||||||||||||||||||| || ||| ||||| ||
Sbjct 1089 TGTTTCGAAAGAGGAAGATATGGTACAAGAGAAATCTTCTGACGGTGGGTTGGTGTCCTT 1148
Query 837 TGAGAGTAGTCTTGGTGTTATGACAGGTGAATGCAAGGAGTTTCTGGTGGAAAGTGAAGG 896
|| |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 1149 TGCGAGTAGTCTTGGTGTTGTGACAGGTGATTGCAATGAGTTTCTGGTGGAAAGTGAAGG 1208
Query 897 AAACGCTGTTGATGAGGATAAAGGATTAGATGAAACTGT-A-----AGCAGCCTTGTCGA 950
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1209 AAACGCTGTTGATGAGGATAAAGGATTAGATGAAACTGTCACTGTCAGCAGCCTTGTCGA 1268
Query 951 ACAAGGGGTGG--GT----CAAGCTAGTACCAGCAAGGAGAGCAATAACAGAACTGATGT 1004
||||||||||| || |||| |||||||||||||||||||||||||||||| ||||
Sbjct 1269 ACAAGGGGTGGTTGTGGGTCAAGGAAGTACCAGCAAGGAGAGCAATAACAGAACTCATGT 1328
Query 1005 TGGTAGTGTCTGTGATGCAGATGAATTGATAATTCCACGTGACGAGTCTATTGGATCAGA 1064
||| |||| |||||| |||||||||||||| |||||| || ||| |||||||||||||||
Sbjct 1329 TGGGAGTGCCTGTGAAGCAGATGAATTGATGATTCCAGGTAACGGGTCTATTGGATCAGA 1388
Query 1065 AAGCAGAGACTCAGGGGATAAAGACGCTGGAAATATGATAGGCAAGGCAGAAGAACACTG 1124
||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1389 AAGCAGAGACTCATGGGATGAAGACGCTGGAAATATGATAGGTGAGGCAAAAGAACACTG 1448
Query 1125 TGAAAATGATCGTGGTGCTGTTAGCGAATTAGAAAAA-CTTGAGTGCGCGGATGAACCTG 1183
|| ||||||| ||||||||||| |||||||||||||| || || || | || | |||||
Sbjct 1449 TGGAAATGATTGTGGTGCTGTTTGCGAATTAGAAAAAACT-GAATGTGAGGGCGGACCTG 1507
Query 1184 AAATTGGTATGAGTTCTGAAAGTTTTCAGTTAACTCCAACTTCAGATTCTGAAATGATAA 1243
|| ||| |||||| ||||||||| ||||||||||||| || | |||||||||| || |
Sbjct 1508 AAGTTGTTATGAGCTCTGAAAGTGTTCAGTTAACTCCCCCTCCGGATTCTGAAACGACGA 1567
Query 1244 TGAACCTTGAGGTCGCTGGAGGAATAGATGTCGTTGTAATTGGTTGTGGTTCTTCCGATC 1303
||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||| ||||
Sbjct 1568 GGAACCTTGAGGACGCTGGAGGAATAGATGTCGCTGTAAGTGGGTGTGGTTCTTCTGATC 1627
Query 1304 AAAAAGCTGAAGAAGAATCTGAAAATGAAGGAAATCAAGAATCAGACGATACTGATAGGA 1363
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GAAAAGCTGAACAAGAATCTGAAAATGAAGGAAATCAAGAATCAGACGATACTGATAGGA 1687
Query 1364 AGTTGTCACTTCCTGATGAAGATAGAGCATCAAGTTTAATAAGTTCCTTTGAAACAGCCA 1423
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1688 AGTTATCACTTCCTGATGAAGATAGAGCATCAAGTTTAAGAAGTTCCTTTGAAACAGCCA 1747
Query 1424 ATGAGACTGTGGAAGATGGGAATCA-ATTAATAAGCAGG 1461
|||||||||||||||||||||| || |||||||||||||
Sbjct 1748 ATGAGACTGTGGAAGATGGGAAGCAGATTAATAAGCAGG 1786
Score = 826 bits (447), Expect = 0.0
Identities = 583/649 (90%), Gaps = 7/649 (1%)
Strand=Plus/Plus
Query 1462 ACCATGCCTGAAAACTCTTCCGTAATTGCTTATGATATAATGGAAAATGAGA--C-GATG 1518
|||||||||||||||||||| ||||||| ||||||||||||||||||||| | | ||||
Sbjct 1873 ACCATGCCTGAAAACTCTTCGGTAATTGGTTATGATATAATGGAAAATGATACGCGGATG 1932
Query 1519 GCACGGCTGATTCATAATCACACTTTTATGGAGCTTGACGAGTACGAAGGAACAGGTGAT 1578
|||| ||||||||| |||||||| ||| || ||||||||||||||||||||||| |||||
Sbjct 1933 GCACCGCTGATTCACAATCACACGTTTGTGAAGCTTGACGAGTACGAAGGAACATGTGAT 1992
Query 1579 ACAAGTGAGAAACTCACTGGATCCAGTTTCCAGAATTCTTCAGAACTATTATCCTCTAAT 1638
||||| |||| |||| ||| ||||||||||||||||| ||| ||| |||||| |||| ||
Sbjct 1993 ACAAGGGAGAGACTCTCTGAATCCAGTTTCCAGAATTATTCTGAAGTATTATGCTCTGAT 2052
Query 1639 CATTCTGTGGAGCTGATAAGTGAGAGAGTGAAGGAAAGAGTTGAGAAGACTCAGCTCTTG 1698
||||||||| ||||||||||||||| |||||| || |||||||||||||| |||||||||
Sbjct 2053 CATTCTGTGCAGCTGATAAGTGAGAAAGTGAAAGAGAGAGTTGAGAAGACCCAGCTCTTG 2112
Query 1699 AAGGAAAAGCTCCAGAGGATTATAAGAAGAACATG-TCTTAGCCGTGAAAATTCAACTGT 1757
|| |||||||||||||||||||||||||||||| | |||| || ||||||||| ||||||
Sbjct 2113 AAAGAAAAGCTCCAGAGGATTATAAGAAGAACA-GATCTTTGCAGTGAAAATTTAACTGT 2171
Query 1758 TACTAAAGTTGCGTCTAAGATGAGCCTAGCTGGTGGAGAACATCCAACGTCCTTAGGGCT 1817
|||| |||||| ||||||| ||||| |||||||||||||||||| |||| ||||||||||
Sbjct 2172 TACTGAAGTTGAGTCTAAGCTGAGCATAGCTGGTGGAGAACATCAAACGACCTTAGGGCT 2231
Query 1818 TGATCACATGTTTGACGGAACAAAGATAGTGCTGCCTGAACAAGAGTTTCCAGCTGATCT 1877
||| || ||| ||| ||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 2232 GGATAACGTGTCTGATAGAACAAAGATAATGCTGCCTGAACATGAGTTTCCAGATGATCT 2291
Query 1878 AGACTTCTCCATTAACGTCCTTGTTATCGGGAAAACTGGGGTGGGAAAAAGTGCAACGGT 1937
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2292 AGACTTCTCCATTAATGTCCTTGTTATCGGGAAAACCGGGGTGGGAAAAAGTGCAACGGT 2351
Query 1938 TAATTCTATTTTTGGGGAGACTAAA-TCTGCTGTTGGTGCATTTGGAGTTACCACTAACT 1996
||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||| || |
Sbjct 2352 TAATTCTATATTTGGGGAGAC-AAAGTCTCCTGTTGGTGCATTTGGAGTTACCACCAAGT 2410
Query 1997 CTGCAAATTATGTTGTTGGGAATGTAGGAGGAATCCAGATAAGTATACTTGATACGCCAG 2056
||| |||||| || |||||||||||||||||||||| |||||| ||||| ||||||||||
Sbjct 2411 CTGAAAATTACGTGGTTGGGAATGTAGGAGGAATCCTGATAAGAATACTGGATACGCCAG 2470
Query 2057 GACTCTTGTCCTCTGCAACTGAGGAACAGTTTAATCAGGAAGTCCTTAT 2105
| ||| ||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 2471 GTCTCATGTCCTCTGCATCTGAGGAACAGTTGAATCTGGAAGTCCTTAT 2519
Score = 634 bits (343), Expect = 1e-180
Identities = 569/670 (85%), Gaps = 47/670 (7%)
Strand=Plus/Plus
Query 2106 AGCAAGATGCCTAGGAATTGTTCTGGCAGAGAACAACATGAGCTTC-TTCTCCGCAAACA 2164
|||||||||||| |||||||| ||||||||||||||||||||| || |||||| ||||||
Sbjct 2785 AGCAAGATGCCT-GGAATTGTGCTGGCAGAGAACAACATGAGC-TCTTTCTCCACAAACA 2842
Query 2165 AAAGCAGCGAATCTACATGTTCGGATTGGAGATTGAACTTGCTGATCTTATGTTGCTCAG 2224
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 2843 AAAGAAGCGAATCTACATGTCCGGACTGGAGATTGAACTTGCTGATCTTATGTTGTTCAG 2902
Query 2225 TTAAGATCCGGTCTAAAGCCGGTTCT-TTGCAAAAGCAGAATACCGATGTAGAAAAGGCC 2283
||||||||||||| |||||||||| | ||||||||||||| ||||| |||||||||||||
Sbjct 2903 TTAAGATCCGGTCAAAAGCCGGTT-TATTGCAAAAGCAGATTACCGTTGTAGAAAAGGCC 2961
Query 2284 GGTGTCTTTGGCTCCCAGCTT-AGCTC-TTTCACTCTATTCTGTTCCTTGTGGAATGTGT 2341
| ||| |||||| ||||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 2962 GATGTATTTGGCAGCCAGCTTCA-CTCATTT-ACTCTATTCTGTTCCTTGTGGAATGTGT 3019
Query 2342 TACTT---------AACTCAGGGCACACTTCTCATTCACATGATGATTTGGAGGAGAAGA 2392
| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3020 TGCTTCTTGGGGCTAACTCAGGGCACACTTCTCATTCACATGATGATTTGGAGGAGAAGA 3079
Query 2393 AAAGGAAATTACTGGATTCTTACCCTGAAATTATATGGGACGAACAGAGTCAAGAATGTC 2452
||||| | ||| |||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 3080 AAAGGCAGTTAATGGATTCTTACCCTAAAATCATCTGGGACGAACAGAGTCAAGAATGTC 3139
Query 2453 TCGAGCAA-GAAACACTTCTCGTGG-AGAAT-CAAG-A-AT-C-AGAAGACGT-GGAGAG 2504
|||||||| || | | | | | |||| | || | | | ||| || ||| |
Sbjct 3140 TCGAGCAAAGAGAGAGT-CAAGAACCAGAAGACCAGGAGAGGCGAGATGAAAAAGGAAAA 3198
Query 2505 ACAA-CA-----T-GAAA-AAGGAACTGTACTTGGTCGTGTAAGAACCAGAAGAGGAAGA 2556
|||| || | | || ||| |||||| | ||||||| | || |||||||||||
Sbjct 3199 ACAAACAGAGGCTTGGAAGAAGTAACTGTTCGTGGTCGTAT--GA----GAAGAGGAAGA 3252
Query 2557 CTTGGATTCCAAGCAACAAAAAGGTTCGGTATCTATCTAGATACATCTGATGTGCACGCA 2616
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 3253 CTTGGGTTCCAAGCAACAAAAAGGTTCGGTATCTATCTCGATACATCTGATTTGCACACC 3312
Query 2617 GGGTTTTCCATTGGAAGCCGAGACTGTAGAA-GAAATGTA-CAAGAAGAAGGGAAG-ATC 2673
||||| ||||||||||| |||| |||||||| ||| | | ||||||||||| ||| |||
Sbjct 3313 GGGTTCTCCATTGGAAGTCGAGGCTGTAGAAAGAAC-G-AGCAAGAAGAAGG-AAGGATC 3369
Query 2674 TTGGTGAGGATGAGAGGCTCCATGTCTGTTTTAGGTTTGGTTCCTATGTTGATATCCGTA 2733
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 3370 TTGGTGAGGATGAGAGGCTCAATGTCTGTTTTAGGTTTGGTTCCTATGTTGATGTCCGTT 3429
Query 2734 TTCACTTCTG 2743
||||||||||
Sbjct 3430 TTCACTTCTG 3439
Score = 220 bits (119), Expect = 3e-56
Identities = 174/198 (88%), Gaps = 14/198 (7%)
Strand=Plus/Plus
Query 131 CAAGTAGTGAAGCTAGTAGTTATAGTAATGGACTTGATTTTGAGACTGATGAAGATGAGA 190
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 197 CAAGTAGTGAAGCTAGTAGTTACAGTAATGGACTTGATTTTGAGACTGATGAAGATGAGA 256
Query 191 CTGTG---TTAGAGGATGTGGTTTTGGATGGGGTTAGGGTAGATAGGCTACTAGGGGAAG 247
||| | |||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 257 CTGAGGAGTTAGAGGATGTGATTTTGGGTGGGGTTAGGGTTGATAGGCTACTAGGGGAAG 316
Query 248 AGTTAGGTGGAGA--T-GGA-A-G----TGAATTT-CAGGTGGGAGTGGGATTTATAGAC 297
|||| |||||||| | ||| | | ||| ||| |||||||||||| |||||||||||
Sbjct 317 AGTTCGGTGGAGAGATTGGAGATGAAAGTGAGTTTTCAGGTGGGAGTGTGATTTATAGAC 376
Query 298 CATTTGCAGAGTGAAGTT 315
||||||| | |||| |||
Sbjct 377 CATTTGCTG-GTGATGTT 393
Score = 176 bits (95), Expect = 7e-43
Identities = 107/113 (95%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 307 AGTGAAGTTAGTGGAGATGAAAGAGGTAGTATGAAAGCAAAAGTAGTCATTCCTCGGGCT 366
||||||||||||| || |||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 472 AGTGAAGTTAGTGAAGGTGAAAGAGGTAGCATGAAAGCAAAAGTTGTCATTCCTCGTGCT 531
Query 367 GTTTTGTCTTTGGATGATGATGAGTTTGATGAAATTTTGGGTAGTGATGTTGA 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 532 GTTTTGTCTTTGGATGATGATGAGTTTGATGAAATTTTGGGTAGTGATGATGA 584
Score = 132 bits (71), Expect = 2e-29
Identities = 109/125 (87%), Gaps = 12/125 (10%)
Strand=Plus/Plus
Query 1 ATGGAATCGGAGAAGCCTGGGATTGTTTCAATTCTCGCTGCAGCAACGGTCGATTCGGAG 60
||||| ||||||||||||||||||||||||| | | || | || | |||||||||
Sbjct 1 ATGGAGTCGGAGAAGCCTGGGATTGTTTCAA-T-T--CT----C-AC-G--GATTCGGAG 48
Query 61 AAACCTCGCGTTTCAATTTCTGCGGTGAGAGCGATTGCGGCGGCAAGAGCTGATTCGTTT 120
|||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 49 AAACCTCGCGTTTCAATTTCCGCGGTTAGAGCGGTTGCGGCGGCAAGAGCTGATTCGTTT 108
Query 121 CTTCT 125
|||||
Sbjct 109 CTTCT 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104024459095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5