BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15920.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493293 jgi|Araly1|493293|fgenesh2_kg.7__2726__AT4G15920.1 1432 0.0
> Ahg493293 jgi|Araly1|493293|fgenesh2_kg.7__2726__AT4G15920.1
Length=974
Score = 1432 bits (775), Expect = 0.0
Identities = 935/1006 (93%), Gaps = 35/1006 (3%)
Strand=Plus/Plus
Query 1 GtctctctgtctctttctctttctctctctctcagaaactctttctcCAATAATGGCAGA 60
||||||||||||||||||| |||| | ||||||||||||| |||||||| |||||||||
Sbjct 1 GTCTCTCTGTCTCTTTCTC--TCTC-C-CTCTCAGAAACTCATTCTCCAAAAATGGCAGA 56
Query 61 GGCAAGTTTCTATATCGGAGTCATAGGAAATGTAATCTCCGTACTAGTT-TTCCTCTCAC 119
| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 57 GCCAAGTTTCTATATCGGAGTCATAGGAAATGTAATCTCTGTACT-CTTCTTCCTCTCAC 115
Query 120 CAGTGGAGACGTTTTGGAAAATAGTGAAGCGGAGATCAACGGAGGAGTACAAAAGCTTGC 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 116 CAGTGGAGACGTTTTGGAAAATAGTGAAGCGGAGATCGACGGAGGAGTACAAAAGCTTGC 175
Query 180 CGTACATTTGCACGTTGTTAGGATCATCGCTATGGACATATTACGGCATCGTCACTCCCG 239
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CGTATATTTGCACGTTGTTGGGATCATCGCTATGGACATATTACGGCATCGTCACTCCCG 235
Query 240 GAGAATATCTTGTCTCCACCGTTAATGGCTTTGGTGCTCTTGTTGAAACCATCTACGTTT 299
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 236 GAGAATATCTTGTCTCCACCGTTAATGGCTTTGGTGCTATCGTTGAAACCATCTACGTTT 295
Query 300 CACTTTTTCTCTTTTATGCCCCTCGACATCTCAAGCTGAAAACAGTGGAT-GTGGAAGCG 358
||||||||||||||||||||||||||||||||||| |||| ||||||| | |||| |||
Sbjct 296 CACTTTTTCTCTTTTATGCCCCTCGACATCTCAAGTTGAATACAGTGG-TAGTGGTTGCG 354
Query 359 ATGTTGAACGTGTTTTTTCCAATCGCGGCGATTGTGGCAACGAGAAGTGCGTTTGAAGAT 418
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 355 ATGTTGAACGTGTTTTTCCCAATCGCAGCGATTGTGGCGACGAGAAGTGCGTTTAAAGAT 414
Query 419 GAGAAGATGCGTTCTCAATCAATAGGTTTCATATCTGCTGGTCTAAACATTATAATGTAT 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGAAGATGCGTTCTCAATCGATAGGTTTCATATCTGCTGGTCTAAACATTATAATGTAT 474
Query 479 GGTTCTCCACTTTCAGCAATGAAAACAGTAGTGACAACAAAGAGCGTGAAATACATGCCG 538
|||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 475 GGTTCTCCTCTTTCTGCTATGAAAACAGTAGTGACGACAAAGAGCGTGAAATACATGCCG 534
Query 539 TTTTGGTTGTCGTTTTTCCTCTTCTTAAACGGCGCGATTTGGGCTGTCTATGCTTTACTC 598
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTTTGGTTGTCGTTCTTCCTCTTCTTAAACGGCGCGATTTGGGCTGTCTATGCTTTACTC 594
Query 599 CAACACGACGTTTTCTTACTCGTGCCAAATGGAGTGGGGTTTGTGTTTGGGACAATGCAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CAACACGACGTTTTCTTACTCGTGCCAAATGGAGTGGGGTTTGTGTTTGGGACAATGCAA 654
Query 659 CTCATACTTTATGGAATTTACAGAAATGCCAAACCGGTTGGTTTAAGCAACGGTTTAAGT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTCATACTTTATGGAATTTACAGAAATGCCAAACCGGTTGGTTTAAGCAACGGTTTAAGT 714
Query 719 GAGATTGCTCAAGATGAAGAGGAAGGCCTCACATCACGTGTTGAACCTCTCCTCTCTTAA 778
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 GAGATTGCTCAAGATGAAGAGGAAGGCCTCACATCACGTGTTGTCCCTCTCCTCTCTTAA 774
Query 779 ATCCCtttttttttATGTCAAGAGCTTGTTAATTAATTTGGGTCTTATAAAT-ACAAATC 837
|||| || | || || |||||||||||||||||||| | |||||
Sbjct 775 ATCC----------AT-T-------TT-TT--TTAATTTGGGTCTTATAAATTATAAATC 813
Query 838 TTTATATTTTTTGTTACATTATTGTGGTGTGCGATTTTGTGTACGTTAtttttttGGACA 897
||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 814 TTTATATTTTT-GTTCCATTATTGTGGTGTGCGATTTTGTGTACGTTATTTATTTG-ACA 871
Query 898 AAATTAGATTAATTTGAAGATGTTACATATTTTAGGGATTGTTATTGTAATGCATCTTTT 957
||||||| || |||| |||||||||| | ||| ||| ||||||||||||||||||||||
Sbjct 872 AAATTAGCTTCATTTAAAGATGTTAC-T-TTTAAGGT-TTGTTATTGTAATGCATCTTTT 928
Query 958 GTTAAGCGAAGATAAGAGAATGGAGTGTTTACTATGTTTTGAGGCT 1003
||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 929 GTTAAGCGAAGATTAGAGAATGAAGTGTTTACTATGTTTTGAGGCT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5