BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15990.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493283 jgi|Araly1|493283|fgenesh2_kg.7__2716__AT4G15990.1 571 1e-162
Ahg946684 jgi|Araly1|946684|scaffold_702913.1 316 6e-86
> Ahg493283 jgi|Araly1|493283|fgenesh2_kg.7__2716__AT4G15990.1
Length=393
Score = 571 bits (309), Expect = 1e-162
Identities = 366/394 (93%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 10 AAGGATAGGAATACAAGGATAGCTCAAAAGGCTTTTGAAATGGTCGATAAGGTGTATGGT 69
|||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAGGATAGGAATACAAAGATCGCTCAAAAGGCTTTTGAAATGGTCGACAAGGTGTATGGT 60
Query 70 AAGTCCCCAAACCTAACCACTAAACCATATGATCCTAAAGACGAGTCCCCTTCTCGCTTT 129
||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 61 AAGTCTCCAAAACTAACCACTAAACCATATGATCCTAAAGGCGAGTTCCCTTCTCATTTT 120
Query 130 ACCCAAAGTGCTTACAAATATGGTGGTCCAAAAATCTATACCGTAAGAGAGGCGACTAGT 189
| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 121 AGCCAAAGTGCTTACAAATATGATGGTCCACAAATTTATACCGTAAGAGAGGCGACTAGT 180
Query 190 ACTTA-TAGTTATGGTCGAGCTATTTATATGTACGCACCTGAGTCAACTATAAAAGAACC 248
|| || ||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 181 AC-TACTAGTTGTGGTCGAGCTATTTATACGTACTCACATGAGTCAACTATAAAAGAACC 239
Query 249 TGTTGTTTCTCACCCCACAGAACATATTCAATACTATGGTGGTACCCGTCCTTTTGTTGC 308
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TGTTCTTTCTCACCCCACAGAACATATTCAATACTTTGGTGGTACCCGTCCTTTTGTTGG 299
Query 309 CAATCCCAACAGGTTTGAGAGGCCGAAAGGACGGGTTATTAACTGCGATGAGGCGGTCCA 368
|||||||||| ||||||||| ||| |||||||| ||||||||||| || |||||||||||
Sbjct 300 CAATCCCAACCGGTTTGAGACGCCAAAAGGACGAGTTATTAACTGTGACGAGGCGGTCCA 359
Query 369 ACTCTATGGAGGGGTGCTTATAAAGGAATTTCGT 402
||||||||||||||||||||||||||||||||||
Sbjct 360 ACTCTATGGAGGGGTGCTTATAAAGGAATTTCGT 393
> Ahg946684 jgi|Araly1|946684|scaffold_702913.1
Length=449
Score = 316 bits (171), Expect = 6e-86
Identities = 340/419 (81%), Gaps = 22/419 (5%)
Strand=Plus/Plus
Query 1 ATGGCTCAAAAGGATAGGAATACAAGGATAGCTCAAAAGGCTTTTGAAATGGTCGATAAG 60
||||||||||| ||||||||||||| || || ||||||||||||||||| ||||||||
Sbjct 21 ATGGCTCAAAATGATAGGAATACAAAAATCGCACAAAAGGCTTTTGAAATAGTCGATAAT 80
Query 61 GTGTATGGTAAGTCCC-CAAACCTAACCACTAAACCATATGATCCTA-AAGACGAGTC-C 117
|||||||||||||||| |||| | ||| |||| ||||||| ||||| || ||||| |
Sbjct 81 GTGTATGGTAAGTCCCACAAA-ATTACCCCTAACCCATATGTTCCTAGAA-ACGAG-CTT 137
Query 118 CCTTCTCGCTTTACCCAAAGTGCTTACAAATATGGTGGTCCAAAAATC-TATACCGTAAG 176
|||||| |||| ||||| | | ||| ||||||||||||| |||||| |||| ||||
Sbjct 138 CCTTCTTATTTTAACCAAAATTCCTACGAATATGGTGGTCC-AAAATCTTATATTGTAAA 196
Query 177 AGAGGCGACTAGTACTTA-TAGTTATGGTCGAGCT-ATTTAT-ATGTAC-GCACCTGAGT 232
|||||| |||||||| || || | | |||||| | |||||| | || | | |||||
Sbjct 197 AGAGGCAACTAGTAC-TATTACTGCTCGTCGAG-TCATTTATCA-GT-CTTCTTATGAGT 252
Query 233 CAACTATA-AAAGAACCTGTTGTTTCTCACCCCACAGAACATATTCAATACTAT-GGTGG 290
|||||||| ||| | || || ||| ||| ||||| | | || |||||||| | ||||
Sbjct 253 CAACTATAGAAA-AGCCAATTTTTTATCATCCCACGGCTCGTACTCAATACT-TCAGTGG 310
Query 291 TACCCGTCCTTTTGTT-GCCAATCCCAACAGGTTTGAGAGGCCGAAAGGACGGGTTATTA 349
| ||||||||||| || ||| || || |||||||||||||||||| ||||| |||||
Sbjct 311 TGCCCGTCCTTTTATTGGCC-ATGTTGACCGGTTTGAGAGGCCGAAAGAACGGGCTATTA 369
Query 350 ACTGCGATGAGGCGGTCCAACTCTATGGAGGGGTGCTTATAAAGGAATTTCGTAAATAA 408
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 370 GCTGCGATGAGGCGGTCCAGCGCTATGGAGGGGTGCTTATAAAGGAATTTCGTAAATAA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14651746176
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5