BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16008.1

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946685 jgi|Araly1|946685|scaffold_702914.1                        409    2e-113


> Ahg946685 jgi|Araly1|946685|scaffold_702914.1
Length=280

 Score =  409 bits (221),  Expect = 2e-113
 Identities = 263/283 (93%), Gaps = 3/283 (1%)
 Strand=Plus/Plus

Query  43   CTCCTCCACTCGCTCTTTCTACTACCATGGAACTTTCTCGAAAGGACCACCGTCATGTGA  102
            ||||| ||||| |||||||||||||||||||| ||||||||||||   |||| |||||||
Sbjct  1    CTCCTTCACTCACTCTTTCTACTACCATGGAATTTTCTCGAAAGG---ACCGGCATGTGA  57

Query  103  TGATTGCAGAAGATGGGTCACAAAACCTCAACAGAAACACTTCCAAGTCAAATCCTAATC  162
            |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct  58   TGATTGCAGAAGATGGGTCAAAAAAGCTCAACAGAAACACTTCCATGTCAAATCCTAATC  117

Query  163  TTCCTTATCCTTATAACCCCAACCCCTCTTCTCTCTATACACATAATAGTTTCTACATCT  222
            |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct  118  TTCCTTATCCTTATAACCCCAACCTCTCTTCTCTCTATACCCATAATAGTTTTTACATCT  177

Query  223  ACCACGGTCCACAAGTTCGTACCGTCAAAGAGTCCATAATATCTTCCACCAATGCTTCTT  282
            |||||||||||||||||||||| |||||||||||||||| |||||||||||||||  |||
Sbjct  178  ACCACGGTCCACAAGTTCGTACGGTCAAAGAGTCCATAAGATCTTCCACCAATGCAACTT  237

Query  283  TTTTGGTCTATCAATCCAACTAGTTAGTTCAATCCATTTAAAA  325
            ||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct  238  TTTTGGTCTATCAATCCGACTAGCTAGTTCAATCCATGTAAAA  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25084879386


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5