BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16008.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value Ahg946685 jgi|Araly1|946685|scaffold_702914.1 409 2e-113 > Ahg946685 jgi|Araly1|946685|scaffold_702914.1 Length=280 Score = 409 bits (221), Expect = 2e-113 Identities = 263/283 (93%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 43 CTCCTCCACTCGCTCTTTCTACTACCATGGAACTTTCTCGAAAGGACCACCGTCATGTGA 102 ||||| ||||| |||||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 1 CTCCTTCACTCACTCTTTCTACTACCATGGAATTTTCTCGAAAGG---ACCGGCATGTGA 57 Query 103 TGATTGCAGAAGATGGGTCACAAAACCTCAACAGAAACACTTCCAAGTCAAATCCTAATC 162 |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| Sbjct 58 TGATTGCAGAAGATGGGTCAAAAAAGCTCAACAGAAACACTTCCATGTCAAATCCTAATC 117 Query 163 TTCCTTATCCTTATAACCCCAACCCCTCTTCTCTCTATACACATAATAGTTTCTACATCT 222 |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 118 TTCCTTATCCTTATAACCCCAACCTCTCTTCTCTCTATACCCATAATAGTTTTTACATCT 177 Query 223 ACCACGGTCCACAAGTTCGTACCGTCAAAGAGTCCATAATATCTTCCACCAATGCTTCTT 282 |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| Sbjct 178 ACCACGGTCCACAAGTTCGTACGGTCAAAGAGTCCATAAGATCTTCCACCAATGCAACTT 237 Query 283 TTTTGGTCTATCAATCCAACTAGTTAGTTCAATCCATTTAAAA 325 ||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 238 TTTTGGTCTATCAATCCGACTAGCTAGTTCAATCCATGTAAAA 280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25084879386 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5