BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16100.1
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946674 jgi|Araly1|946674|scaffold_702903.1 1755 0.0
Ahg338762 jgi|Araly1|338762|fgenesh1_pg.C_scaffold_2000861 383 2e-105
Ahg906319 jgi|Araly1|906319|Al_scaffold_0003_3447 366 2e-100
Ahg903715 jgi|Araly1|903715|Al_scaffold_0003_843 335 6e-91
> Ahg946674 jgi|Araly1|946674|scaffold_702903.1
Length=1214
Score = 1755 bits (950), Expect = 0.0
Identities = 1145/1235 (93%), Gaps = 29/1235 (2%)
Strand=Plus/Plus
Query 70 TCCATCGCCGGCCTGTACAAATGTCGACTACCCGTAGGATCCGCGGCGAGAATCGGTTTT 129
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCATCGCCGGCCTGTAGAAATGTCGACTACCCGTAGGATCCGCGGCGAGAATCGGTTTT 60
Query 130 ATAACCCACCTCCGATgagaaaacttcaacaagagcgtgagaagaagagacttgaagcgg 189
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 61 ATAACCCTCCTCCGATGAGAAAACTTCAACAGGAGCGTGAGAAGAAGAGACTTGAATCGG 120
Query 190 aggagatagagaaagagaagaagaaggcaaaggagaTTCTCGATCGAAAGATTAAAGTC- 248
||||| ||| | ||| | || ||| |||||||| |||||||| |||||||||| |
Sbjct 121 AGGAG---GAG--A-AGATG-AG--GGCCAAGGAGATGCTCGATCGTAAGATTAAAG-CG 170
Query 249 GAGGAGAAGGAGATTAAGCAACCTG-AG--GAGTGCTCGACCTCCGATTGCTCTGTGCCG 305
|||||||||||||| || ||||||| || |||||||||||||||||||| ||| |||||
Sbjct 171 GAGGAGAAGGAGATGAATCAACCTGAAGAAGAGTGCTCGACCTCCGATTGTTCTTTGCCG 230
Query 306 AGTCGGGTCTCCTccaccaccaccaccaccGGAACTACTTCTTCCAATTTGGGCCGGTTT 365
||||||| | || |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 231 AGTCGGG--T-CT---CCACCACCACCACCGG-A--ACTTCTTCCAATTTGGGCCGGTTT 281
Query 366 CTGGATTGCACCACTCCAATTGTTTCTACGCAGCACTTGCCTTTGACAAGTAGTAAGGGG 425
||||||||||||||||| |||||||||| ||| |||||||||||||||| | |||||||
Sbjct 282 CTGGATTGCACCACTCCCGTTGTTTCTACCCAGTACTTGCCTTTGACAAGCATTAAGGGG 341
Query 426 TGGAGAACTCGTGAACCAGAGTACCGTCCCTATTTCTTGCTGAATGATTTGTGGGATTCA 485
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 342 TGGAGAACTCGTGAACCAGAGTACTGTCCCTATTTCTTGTTGAATGATTTGTGGGATTCG 401
Query 486 TTTGAGGAATGGAGCGCCTACGGTGTCGGGGTTCCTCTTCTTTTAAATGGG-ATCGATTC 544
|||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 402 TTTGAGGAGTGGAGCGCTTACGGTGTCGGGGTTCCTCTTCTTTTAAATGGGAAT-GATTC 460
Query 545 GGTTGTTCAGTATTATGTTCCTTATCTCTCTGGTATTCAGCTTTATGAAGACCCATCTAG 604
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 461 GGTTGTTCAGTATTATGTTCCTTATCTCTCTGGAATTCAGCTTTATGAAGATCCATCCAG 520
Query 605 AGCCTGCACAACTAGGAGGAGAGTTGGTGAAGAAAGTGATGGTGATTCGCCTAGAGACAT 664
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 521 AGCCTGCACAAGTAGGAGGAGAGTTGGTGAAGAAAGTGATGGTGATTCGCCTAGATACAT 580
Query 665 GAGTAGCGATGGGAGCAATGACTGTAGAGAGCTTTCTCAAAATTTATACAGAGCCTCTTT 724
|||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 581 GAGTAGCGATGGCAGCAATGACTGTAGAGACCTTTCTCGGAGTTTATACAGAGCCTCTTT 640
Query 725 GGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAACTCTCC 784
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GCAGGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAACTCTCC 700
Query 785 TGGTGAACTTGTCTTTGAGTATCTTGAGGGTGCTATGCCATTTGGCCGTGAACCATTGAC 844
|||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 701 TGGTGACCTTATCTTTGAGTATCTTGAAGCTGCTATGCCATTTGGCCGTGAACCATTGAC 760
Query 845 CGACAAGATCTCAAACCTGTCATCACAATTCCCAGCACTCAGAACATACAGAAGCTGTGA 904
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 761 CGACAAGATCACAAACCTGTCATCGCAATTCCCAGCACTCAGAACATACAGGAGCTGTGA 820
Query 905 TCTATCACCTTCGAGTTGGGTCTCTGTTGCTTGGTACCCAATATACCGAATACCATTAGG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TCTATCACCTTCGAGTTGGGTCTCTGTTGCTTGGTACCCAATATACCGAATACCATTAGG 880
Query 965 TCAATCGTTACAAAACCTCGATGCTTGCTTTTTAACATTCCACTCGTTGTCAACACCCTG 1024
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 881 TCAATCGTTACAAAACCTCGACGCTTGCTTTTTAACATTCCACTCCTTGTCAACCCCCTG 940
Query 1025 TCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGC---ATCGGCGAA 1081
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 941 TCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGCTGCATCGTTGAA 1000
Query 1082 GCTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAACTGTCAGAATGGAGCCC 1141
|||||| || || ||||| || ||||| |||||||||||||||||||||| |||||||||
Sbjct 1001 GCTTCCTTTACCTACTTTTGGACTCGCGTCCTACAAGTTTAAACTGTCAGTATGGAGCCC 1060
Query 1142 AGAGAGTGACGTAGACGAGAACCAGAGAGTCGGGACGCTGCTACGAACAGCTGAAGAGTG 1201
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1061 AGAGGGTGACGTAGACGAGAACCAGAGAGTTGGAACGCTGCTACGAACAGCTGAAGAGTG 1120
Query 1202 GCTCAGGCGGTTGAAGGTGATTCTACCGGACTTTAGACACTTCATATCGCATAGTGGTTC 1261
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1121 GCTCAGGCGGTTGAAGGTAACTCTGCCGGACTTTAGACACTTCATATCGCATAGTGGTTC 1180
Query 1262 GGCGTGGAGATGATGATATTTAGAGTCATTTTCTA 1296
||| ||||||||||||||||||||||||||| |||
Sbjct 1181 GGCATGGAGATGATGATATTTAGAGTCATTT-CTA 1214
> Ahg338762 jgi|Araly1|338762|fgenesh1_pg.C_scaffold_2000861
Length=420
Score = 383 bits (207), Expect = 2e-105
Identities = 257/281 (91%), Gaps = 3/281 (1%)
Strand=Plus/Plus
Query 937 GGTACCCAATATACCGAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT 996
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GGTACCTAATATACCAAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT 197
Query 997 TAACATTCCACTCGTTGTCAACACCCTGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCT 1056
|| |||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 198 TACCATTCCACTCTTTATCAACACGCTG-CGAGGTACAAGCAATGAGGAAGGTCAAAGCT 256
Query 1057 CAAGCAAATCGGTTGCATCGGCGAAGCTTCCA-TTGCCCACTTTCGGTCTCGCATCCTAC 1115
|||||||||| ||| | || ||||||||||| || ||||||||||||||||||| ||||
Sbjct 257 CAAGCAAATCAGTTATACCGTCGAAGCTTCCACTT-CCCACTTTCGGTCTCGCATGCTAC 315
Query 1116 AAGTTTAAACTGTCAGAATGGAGCCCAGAGAGTGACGTAGACGAGAACCAGAGAGTCGGG 1175
||||||||| |||| | ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 316 AAGTTTAAATTGTCGGTATGGAGCCCAGAGAGTGACATGGACGAGAACCAGAGAGTCGGG 375
Query 1176 ACGCTGCTACGAACAGCTGAAGAGTGGCTCAGGCGGTTGAA 1216
|||||| ||||||| |||||||||||||||| || ||||||
Sbjct 376 ACGCTGTTACGAACGGCTGAAGAGTGGCTCAAGCCGTTGAA 416
Score = 202 bits (109), Expect = 6e-51
Identities = 125/133 (94%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 719 CTCTTTGGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6 CTCTTTGGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAACAGTAA 65
Query 779 CTCTCCTGGTGAACTTGTCTTTGAGTATCTTGAGGGTGCTATGCCATTTGGCCGTGAACC 838
||||| |||||| ||| ||||||| |||||||| | ||||||||||||||| ||||||||
Sbjct 66 CTCTCATGGTGACCTTTTCTTTGAATATCTTGAAGCTGCTATGCCATTTGGTCGTGAACC 125
Query 839 ATTGACCGACAAG 851
|||||||||||||
Sbjct 126 ATTGACCGACAAG 138
> Ahg906319 jgi|Araly1|906319|Al_scaffold_0003_3447
Length=468
Score = 366 bits (198), Expect = 2e-100
Identities = 237/256 (93%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 963 GGTCAATCGTTACAAAACCTCGATGCTTGCTTTTTAACATTCCACTCGTTGTCAACACCC 1022
|||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 111 GGTCAATCGTTACAAAACCTCGATGCTTGCTTTTTACCATTCCACTCTTTATCAACACCC 170
Query 1023 TGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGCATCGGCGAAG 1082
|||||||||||||||||| ||||||||||||||||||||||||| |||| | || |||||
Sbjct 171 TGTCGAGGTACAAGCAATTAGGAAGGTCAAAGCTCAAGCAAATCAGTTGTACCGTCGAAG 230
Query 1083 CTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAACTGTCAGAATGGAGCCCA 1142
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 231 CTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAATTTTCAGTATGGAGCCCA 290
Query 1143 GAGAGTGACGTAGACGAGAACCAGAGAG--TCGGGACGCTGCTACGAACAGCTGAAGAGT 1200
||||||||| | |||||||||||||||| ||||||||||| ||||||| ||| ||||||
Sbjct 291 GAGAGTGACATGGACGAGAACCAGAGAGAGTCGGGACGCTGTTACGAACGGCTCAAGAGT 350
Query 1201 GGCTCAGGCGGTTGAA 1216
||||||||| ||||||
Sbjct 351 GGCTCAGGCCGTTGAA 366
> Ahg903715 jgi|Araly1|903715|Al_scaffold_0003_843
Length=642
Score = 335 bits (181), Expect = 6e-91
Identities = 239/266 (90%), Gaps = 7/266 (3%)
Strand=Plus/Plus
Query 937 GGTACCCAATATACCGAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT 996
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GGTACCTAATATACCAAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT 197
Query 997 TAACATTCCACTCGTTGTCAACACCCTGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCT 1056
|| |||||||||| || ||||||| ||||| | ||||||||||||||||||||||
Sbjct 198 TACCATTCCACTCTTTATCAACACACTGTC---G----AGCAATGAGGAAGGTCAAAGCT 250
Query 1057 CAAGCAAATCGGTTGCATCGGCGAAGCTTCCATTGCCCACTTTCGGTCTCGCATCCTACA 1116
|||||||||| |||| | || ||||||||||| ||||||||||||||| |||||||||||
Sbjct 251 CAAGCAAATCAGTTGTACCGTCGAAGCTTCCACTGCCCACTTTCGGTCCCGCATCCTACA 310
Query 1117 AGTTTAAACTGTCAGAATGGAGCCCAGAGAGTGACGTAGACGAGAACCAGAGAGTCGGGA 1176
|||||||| | || | ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 311 AGTTTAAATTATCGGTATGGAGCCCAGAGAGTGACATGGACGAGAACCAGAGAGTCGGGA 370
Query 1177 CGCTGCTACGAACAGCTGAAGAGTGG 1202
||||| ||||||| ||||||||||||
Sbjct 371 CGCTGTTACGAACGGCTGAAGAGTGG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54126238145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5