BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16140.1

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890648 jgi|Araly1|890648|Al_scaffold_0007_2634                    706    0.0  


> Ahg890648 jgi|Araly1|890648|Al_scaffold_0007_2634
Length=504

 Score =  706 bits (382),  Expect = 0.0
 Identities = 468/507 (92%), Gaps = 15/507 (3%)
 Strand=Plus/Plus

Query  31   ATGGAAACTTTCAGAACATTCCA------tc-ttt--ttctcttcttcttcttcttcACA  81
            |||||||||||||||||||||||      || |||  |||||||||||||||||||||||
Sbjct  1    ATGGAAACTTTCAGAACATTCCATCTTTTTCTTTTACTTCTCTTCTTCTTCTTCTTCACA  60

Query  82   TTCACTACTACCCTGACGTCACCATCTCAGATCGCAGACTGTACAATGTGCACTTCTTGT  141
            ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   TTCACTACTTCACTGACGTCACCATCTCAGATCGCTGACTGTACAATGTGCACTTCTTGT  120

Query  142  GACAACCCTTGTCAACCAAACCCTTctcctcctcctccaccgtcaaatccatctcctcct  201
            ||||||||||||||||||||||| | | ||||||| || |||||||||||||||||||||
Sbjct  121  GACAACCCTTGTCAACCAAACCC-T-T-CTCCTCCACCGCCGTCAAATCCATCTCCTCCT  177

Query  202  cctccatctcccaccaccaccgcctgtcctccacctcctagctccaGTGGTGGTGGTCCT  261
            |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct  178  CCTCCAGCCCCCACCACCACCGCATGTCCTCCACCTCCTAGCTCCGGTGGTGGTGGTCCT  237

Query  262  TACTACTACTACCCTCCTGCTTCTCAATCTGGCTCTTACCGTCCACCACCTTCTTCCTCC  321
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct  238  TACTACTACTACCCTCCTCCTTCTCAATCTGGCTCCTACCGTCCACCACCTTCTTCCTCC  297

Query  322  AGTGGTGGCTACTACTATCCACCTCCTAAAAGTGGAGGAAACTACCCTTATACACCGCCT  381
             | ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| 
Sbjct  298  GGCGGTGGCTACTATTATCCACCTCCTAAAAGTGGAGGAAACTACCCTTTTACGCCGCCG  357

Query  382  CCAAACCCTATCGTTCCATATTTTCCGTTTTACTATTACAACCCTCCGCCGCAATCTGTT  441
            |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  358  CCAAACCCCATCGTTCCATATTTTCCGTTTTACTACTACAACCCTCCGCCTCAATCTGTT  417

Query  442  ATGTCCGGATCCGATGCAAAGATCAGATTCTCTTACGGAGTTTCATTTATT-TTA-A-TT  498
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||  | ||
Sbjct  418  ATGTCCGGATCCGATGCAAAGATCAGATTCTCTTACGGAGTTTCATTTCTTCTTTTAGTT  477

Query  499  TTCTCTCTTTATTTCGGTTGCTTCTAG  525
            |||||||||| |||||||||||| |||
Sbjct  478  TTCTCTCTTTGTTTCGGTTGCTTTTAG  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30536456517


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5