BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16140.1 Length=826 Score E Sequences producing significant alignments: (Bits) Value Ahg890648 jgi|Araly1|890648|Al_scaffold_0007_2634 706 0.0 > Ahg890648 jgi|Araly1|890648|Al_scaffold_0007_2634 Length=504 Score = 706 bits (382), Expect = 0.0 Identities = 468/507 (92%), Gaps = 15/507 (3%) Strand=Plus/Plus Query 31 ATGGAAACTTTCAGAACATTCCA------tc-ttt--ttctcttcttcttcttcttcACA 81 ||||||||||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct 1 ATGGAAACTTTCAGAACATTCCATCTTTTTCTTTTACTTCTCTTCTTCTTCTTCTTCACA 60 Query 82 TTCACTACTACCCTGACGTCACCATCTCAGATCGCAGACTGTACAATGTGCACTTCTTGT 141 ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 TTCACTACTTCACTGACGTCACCATCTCAGATCGCTGACTGTACAATGTGCACTTCTTGT 120 Query 142 GACAACCCTTGTCAACCAAACCCTTctcctcctcctccaccgtcaaatccatctcctcct 201 ||||||||||||||||||||||| | | ||||||| || ||||||||||||||||||||| Sbjct 121 GACAACCCTTGTCAACCAAACCC-T-T-CTCCTCCACCGCCGTCAAATCCATCTCCTCCT 177 Query 202 cctccatctcccaccaccaccgcctgtcctccacctcctagctccaGTGGTGGTGGTCCT 261 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 178 CCTCCAGCCCCCACCACCACCGCATGTCCTCCACCTCCTAGCTCCGGTGGTGGTGGTCCT 237 Query 262 TACTACTACTACCCTCCTGCTTCTCAATCTGGCTCTTACCGTCCACCACCTTCTTCCTCC 321 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 238 TACTACTACTACCCTCCTCCTTCTCAATCTGGCTCCTACCGTCCACCACCTTCTTCCTCC 297 Query 322 AGTGGTGGCTACTACTATCCACCTCCTAAAAGTGGAGGAAACTACCCTTATACACCGCCT 381 | ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 298 GGCGGTGGCTACTATTATCCACCTCCTAAAAGTGGAGGAAACTACCCTTTTACGCCGCCG 357 Query 382 CCAAACCCTATCGTTCCATATTTTCCGTTTTACTATTACAACCCTCCGCCGCAATCTGTT 441 |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 358 CCAAACCCCATCGTTCCATATTTTCCGTTTTACTACTACAACCCTCCGCCTCAATCTGTT 417 Query 442 ATGTCCGGATCCGATGCAAAGATCAGATTCTCTTACGGAGTTTCATTTATT-TTA-A-TT 498 |||||||||||||||||||||||||||||||||||||||||||||||| || || | || Sbjct 418 ATGTCCGGATCCGATGCAAAGATCAGATTCTCTTACGGAGTTTCATTTCTTCTTTTAGTT 477 Query 499 TTCTCTCTTTATTTCGGTTGCTTCTAG 525 |||||||||| |||||||||||| ||| Sbjct 478 TTCTCTCTTTGTTTCGGTTGCTTTTAG 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30536456517 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5