BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16150.1
Length=3182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355148 jgi|Araly1|355148|fgenesh1_pg.C_scaffold_7002321 4560 0.0
Ahg318458 jgi|Araly1|318458|fgenesh1_pm.C_scaffold_3001474 1096 0.0
Ahg938812 jgi|Araly1|938812|scaffold_503003.1 108 3e-22
Ahg940479 jgi|Araly1|940479|scaffold_601023.1 82.4 2e-14
> Ahg355148 jgi|Araly1|355148|fgenesh1_pg.C_scaffold_7002321
Length=2772
Score = 4560 bits (2469), Expect = 0.0
Identities = 2671/2772 (96%), Gaps = 0/2772 (0%)
Strand=Plus/Plus
Query 167 ATGGCCGGCGTTGATTCCGGCAAGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTA 226
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGGTGTTGATTCCGGCAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTA 60
Query 227 CAAGATCTAGATATACAAACAATGTTAGATGAAGCATACAGTAGGTGGCTCCGTCCTAAT 286
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 CAAGATCTAGATATACAAACAATGTTGGATGAAGCATACAGTAGGTGGCTCCGGCCTAAT 120
Query 287 GAGATCCATGCTCTTCTCTGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAAC 346
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGATCCATGCTCTCCTCTGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAAT 180
Query 347 TTACCCAAAAGTGGTACGATTGTGTTGTTTGATCGTAAGATGTTGAGGAACTTTAGAAAG 406
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTACCCAAAAGTGGTACGATTGTGTTGTTTGATCGTAAGATGTTGAGAAACTTTAGAAAG 240
Query 407 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACAT 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACAC 300
Query 467 CTAAAAGTTGGTAATGAGGAAAGGATTCATGTTTATTATGCCCACGGTGAGGATACCCCT 526
|| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 301 CTGAAAGTCGGTAATGAGGAAAGGATTCATGTTTACTATGCGCATGGTGAGGATACCCCT 360
Query 527 ACATTTGTGCGAAGGTGTTACTGGTTATTGGATAAGTCTCAGGAGCACATAGTTCTTGTC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACATTTGTGCGAAGGTGTTACTGGTTATTGGATAAGTCTCAGGAGCACATAGTTCTTGTC 420
Query 587 CACTATCGCGAGACACATGAGGTTCATGCAGCTCCAGCAACACCTGGGAACTCGTACTCA 646
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 421 CACTATCGTGAGACACATGAGGTTCAGGCAGCTCCAGCAACACCTGGGAATTCGTACTCA 480
Query 647 AGTTCGATCACTGACCACTTATCTCCTAAAATTGTAGCTGAAGATACCAGTTCTGGTGTC 706
||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 481 AGTTCAATCACTGACCACTTATCTCCTATAATTGTGGCTGAAGATACCAGTTCTGGTGTC 540
Query 707 CATAATACTTGTAATACAGGTTTTGAAGTGCGGAGCAACAGTCTGGGTTCTAGAAATCAT 766
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 541 CATAATGCTTGTAATACAGGGTTTGAAGTGCGCAGCAACAGTCTGGGTTCTAGAAATCAT 600
Query 767 GAGATTAGGCTTCATGAGATCAACACACTTGATTGGGATGAGCTTCTAGTACCTGCAGAT 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GAGATTAGGCTTCATGAGATCAACACACTTGATTGGGATGAGCTTCTAGTACCAGCAGAT 660
Query 827 ATTAGCAACCAATCTCATCCAACCGAAGAAGATATGCTATACTTCACAGAACAGCTCCAA 886
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTAGCAACCAGTCTCATCCAACCGAAGAAGATATGCTATACTTCACAGAACAGCTCCAA 720
Query 887 ACTGCACCCAGGGGATCTGTAAAGCAAGGAAATCACCTTGCAGGCTACAACGGATCAGTA 946
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTGCACCCAGGGGATCTGCAAAGCAAGGAAATCACCTTGCAGGCTACAACGGATCAGTA 780
Query 947 GATATACCATCATTCCCGGGTCTTGAAGATCCTGTATATCAAAATAATAACTCATGTGGT 1006
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 GATATACCATCATTCCCCGGTCTTGAAGATCCTGTTTATCAAAATAATAACTCATGTGGT 840
Query 1007 GCAGGAGAATTTTCTAGTCAGCATTCGCACTGTGGAGTAGATCCAAATCTACAGAGAAGG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 GCAGGAGAATTTTCTAGTCAGCATTCGCACTGTGGAGTAGATCCAAATCTACAGAGACGG 900
Query 1067 GATTTCAGTGCAACAGTTACTGATCAACCAGGTGATGCTTTGCTTAATAACGGTTATGGA 1126
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATTCCATTGCAACAGGTACTGATCAACCAGGTGATGCTTTGCTTAATAACGGTTATGGA 960
Query 1127 AGTCAGGATAGTTTTGGAAGGTGGGTGAACAACTTCATTAGTGACTCTCCTGGTTCCGTC 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGTCAGGATAGTTTTGGAAGGTGGGTGAACAACTTCATTAGTGACTCTCCTGGTTCCGTC 1020
Query 1187 GATGATCCTTCCCTTGAAGCTGTATATACACCTGGGCAGGATTCATCTACTCCTCCTACT 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGATCCTTCCCTTGAAGCTGTATATACACCTGGGCAGGATTCATCTACTCCTCCTACT 1080
Query 1247 GTATTTCATTCCCACTCTGACATACCGGAGCAAGTATTCAACATAACTGATGTTTCACCT 1306
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTATTTCCTTCTCATTCTGACATACCGGAGCAAGTATTCAACATAACTGATGTTTCACCT 1140
Query 1307 GCCTGGGCGTATTCGACAGAGAAAACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGC 1366
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCCTGGGCCTACTCGACAGAGAAAACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGC 1200
Query 1367 TTCCAACATTTGGGAAGATCAAACCTCATCTGCATATGTGGAGAGTTGCGTGTCCCCGCC 1426
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1201 TTCCAACATTTTGGAAGATCAAACCTCTTCTGCATATGTGGAGAGTTGCGTGTCACCGCA 1260
Query 1427 GAATTTCTCCAGATGGGGGTTTATCGTTGCTTCCTTCCTCCTCAATCTCCTGGGGTGGTG 1486
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1261 GAATTTCTCCAGATGGGGGTTTATCGTTGCTTCCTTCCCCCTCAATCTCCTGGGGTTGTG 1320
Query 1487 AACCTTTATCTTAGTGTCGATGGAAACAAACCGATCAGCCAATTGTTCAGCTTCGAACAC 1546
||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1321 AACCTATATCTGAGTGTCGATGGAAACAAACCGATCAGCCAATCGTTCAGCTTCGAACAC 1380
Query 1547 CGCTCAGTTCAGTTTATCGAAAAAGCCATCCCTCAAGACGACCAGCTATACAAGTGGGAA 1606
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 CGCTCAGTTCAGTTTATTGAAAAAGCCATCCCTCAAGATGACCAGCTATACAAGTGGGAA 1440
Query 1607 GAATTTGAGTTCCAAGTCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGC 1666
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GAATTTGAATTCCAAGTCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGC 1500
Query 1667 GTTTTAACTAGTAAAATATCACCTGAAAACCTTCTTGAGGCTAAGAAACTCGCCAGCAGG 1726
||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1501 ATTTTAACAAGTAAAATCTCACCTGATAACCTGCTAGAGGCTAAGAAACTCGCCAGCAGG 1560
Query 1727 ACTTCGCATCTCTTAAATAGTTGGGCTTATTTAATGAAGTCAATTCAGGCAAATGAGGTA 1786
||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1561 ACTTCCCATCTCTTAAATAGTTGGGCTTATTTAATGAAGTCAATCCAAGCAAATGAGGTG 1620
Query 1787 CCGTTTGATCAAGCGAGGGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAG 1846
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CCGTTTGATCAAGCGAGAGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAG 1680
Query 1847 TGGCTTTTGGAGAAGGTCATCGAAAACCGCAACACTAAGGAATATGACTCTAAAGGGCTT 1906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1681 TGGCTTTTGGAGAAGGTCATCGAAAACCGCAACACTAAGGAATATGACTCTAAAGGCCTT 1740
Query 1907 GGAGTGATCCACCTCTGTGCCGTCCTAGGATACACTTGGTCAATCCTTCTCTTCTCCTGG 1966
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1741 GGAGTGATCCACCTTTGCGCCGTCCTAGGATACACTTGGTCAATCCTTCTATTCTCATGG 1800
Query 1967 GCAAATATATCGTTGGATTTCCGTGATAAGCAGGGTTGGACTGCTCTTCATTGGGCAGCA 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GCAAATATATCGTTGGATTTCCGTGATAAGCAGGGTTGGACTGCTCTTCATTGGGCAGCA 1860
Query 2027 TACTATGGAAGGGAGAAAATGGTGGCTGCTCTTCTATCTGCGGGGGCAAGGCCAAACCTG 2086
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1861 TACTATGGAAGGGAGAAAATGGTGGCTGCTCTACTATCTGCCGGGGCAAGGCCAAACCTG 1920
Query 2087 GTGACAGACCCTACTAAGGAATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAACAG 2146
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1921 GTGACAGACCCGACTAAGGAATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAGCAG 1980
Query 2147 AAAGGTTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTGTAGCACAGTTCAAG 2206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1981 AAAGGTTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTCTAGCACAGTTCAAG 2040
Query 2207 GACATGCAAACGGCTGGAAACATTAGTGGCAACCTTGAAACCATCAAGGCAGAGAAGTCG 2266
|||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2041 GACATGGAAATGGCTGGAAACATCAGTGGCAAACTTGAAACCATCAAGGCAGAGAAGTCA 2100
Query 2267 TCAAATCCAGGGAATGCAAATGAAGAGGAGCAAAGCCTGAAGGACACTCTAGCGGCATAC 2326
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2101 TCGAATCCAGGGAATGCAAATGAAGAGGAGCAGAGCCTGAAGGACACTCTGGCGGCATAC 2160
Query 2327 AGAACTGCTGCAGAGGCAGCGGCGCGGATTCAGGGAGCGTTCAGGGAGCACGAGCTGAAA 2386
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2161 AGAACTGCTGCAGAGGCAGCGGCGCGTATTCAGGGAGCGTTCAGGGAGCACGAGCTGAAA 2220
Query 2387 GTTAGGTCAAGCGCAGTTAGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACATAATAGCC 2446
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2221 GTTAGGTCAAGCGCCGTTAGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACATAATTGCC 2280
Query 2447 GCGATGAAGATTCAGCACGCGTTTCGCAATTTCGAGGTTCGTAGGAAGATTGCAGCCGCT 2506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2281 GCGATGAAGATTCAGCACGCGTTTCGCAATTTCGAGGTTCGTAGGAAGATTGCAGCTGCT 2340
Query 2507 GCTCGGATTCAGTATAGGTTCCAAACATGGAAAATGAGGCGGGAATTTCTGAACATGCGA 2566
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2341 GCTCGGATTCAGTACAGGTTCCAAACATGGAAAATGAGGCGGGAGTTTTTGAACATGCGG 2400
Query 2567 AAGAAGGCAATTAGGATCCAGGCTGCGTTTAGAGGTTTCCAAGTAAGAAGACAGTACCAG 2626
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2401 AATAAGGCAATTAGGATCCAGGCTGTGTTTAGAGGGTTCCAAGTAAGAAGACAGTACCAG 2460
Query 2627 AAAATAACATGGTCAGTGGGAGTTCTTGAGAAGGCAATTCTGAGATGGAGACTGAAGAGA 2686
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2461 AAAATAACATGGTCGGTGGGAGTTCTTGAGAAGGCGATTCTGAGATGGAGACTGAAGAGA 2520
Query 2687 AAAGGATTCAGAGGCCTTCAGGTAAGTCAACCTGACGAGAAGGAAGGGAGTGAGGCGGTG 2746
||||| |||||||| |||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 2521 AAAGGTTTCAGAGGGCTTCAGGTTAGGCAACCTGAGGAGAAGGAAGGAAGTGAGGCGGTG 2580
Query 2747 GAGGATTTCTACAAGACAAGCCAGAAACAAGCGGAGGAACGGCTTGAGAGGTCAGTGGTT 2806
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2581 GAGGATTTCTACAAGACAAGCCAGAAACAAGCAGAGGAACGGCTCGAGAGGTCAGTGGTT 2640
Query 2807 AAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATTACAGAAGGATGAAACTG 2866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 AAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATTACAGAAGGATGAAACTG 2700
Query 2867 GCTCATGAAGAAGCTCAGCTGGAGTATGATGGGATGCAAGAACTTGATCAAATGGCTACG 2926
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 2701 GCTCATGAAGAAGCTCAGCTGGAGTATGATGGGATGAAAGAACTTGAGCAAATGGCTATG 2760
Query 2927 GAGGAGAGCTGA 2938
||||||||||||
Sbjct 2761 GAGGAGAGCTGA 2772
> Ahg318458 jgi|Araly1|318458|fgenesh1_pm.C_scaffold_3001474
Length=2574
Score = 1096 bits (593), Expect = 0.0
Identities = 1441/1841 (78%), Gaps = 95/1841 (5%)
Strand=Plus/Plus
Query 1099 TGATGCTTTGCTTAATAACGGT-TATGGAAGTCAG-GATAGTTTTGGAAGGTGGGTGAAC 1156
||||||||||||||| || ||| | ||||| | || ||||||||||||||| ||||
Sbjct 768 TGATGCTTTGCTTAACAATGGTCCA-CAAAGTC-GAGAGAGTTTTGGAAGGTGGATGAA- 824
Query 1157 AAC-TTCATTAGTGACTCTCCTGGTTCCG-TCGATGATCCTTCCCTTGAA-GC-TGTATA 1212
| || || || || ||| ||| | || | || ||||||||| ||||| | || |
Sbjct 825 TTCATTTATCAGCGAATCTAATGGCT-CGCTGGAGGATCCTTCCTTTGAACCCATG-GT- 881
Query 1213 TACACCTGGGCAGGATTCATCTA-CTCCTCCTA-CTGTATTTCATTCCCACTCTGACATA 1270
||| ||| |||||| ||| || ||||| | | ||||||||||||| |||||| |||||
Sbjct 882 TACGCCTAAGCAGGACCCAT-TAGCTCCT-CAAGCTGTATTTCATTCTCACTCTAACATA 939
Query 1271 CCGGAGCAAGTATTCAACATAACTGATGTTTCACCTGCCTGGGCGTATTCGACAGAGAAA 1330
|| |||||||| || ||||||||||||||||||||| | ||||| ||||| ||||||||
Sbjct 940 CCTGAGCAAGTGTTTAACATAACTGATGTTTCACCTTCTTGGGCCTATTCTTCAGAGAAA 999
Query 1331 ACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGCTT-CCAACATTTGGGAAGATCAAA 1389
|| ||||||||||||||||||||||| || ||||| || ||||| | | | ||||
Sbjct 1000 ACTAAGATTCTTGTAACTGGGTTCTTGCATGACAG-TTATCAACA--T--CATG--CAAA 1052
Query 1390 CC-TCATCTGCATATGTGGAGAGTTGCGTGTCCCCGCCGAATTTCTCCAGATGGGGGTTT 1448
|| | || ||| | || || || || ||||||| || |||| ||||||| ||| || |
Sbjct 1053 CCTTTAT-TGCGTTTGCGGTGACTTTTGTGTCCCTGCAGAATATCTCCAGGCGGGAGTGT 1111
Query 1449 ATCGTTGCT-TCCTTCCTCCTCAATCTCCTGGGGTGGTGAACCTTTATCTTAGTGTC-GA 1506
| ||||| | || | ||||| || || |||||| |||| ||||| |||||||| | | ||
Sbjct 1112 ACCGTTG-TATCATACCTCCGCACTCACCTGGGATGGTAAACCTCTATCTTAGCG-CAGA 1169
Query 1507 TGGAAACAAACCGATCAGCCAATTG-TTCAGCTTCGAACACCGCTCAGT-TCAGTTTATC 1564
|||| ||||||| ||||||||| || ||||| || |||||||| ||||| ||| || |
Sbjct 1170 TGGACACAAACCAATCAGCCAA-TGTTTCAGGTTTGAACACCGTTCAGTCCCAG-TTCTT 1227
Query 1565 GAAAAAG-CCATCCCTCAAGACGA-CCAGCTATACAAGTGGGAAGAATTTGAGTTCCAAG 1622
| | ||| || ||||| |||| | | || || ||| ||||||||||||||||||||||
Sbjct 1228 G-ATAAGACCGTCCCTGAAGAAAATCAAG-AATCCAAATGGGAAGAATTTGAGTTCCAAG 1285
Query 1623 TCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGCGTTTTAACTAGTAAAA 1682
|||||||| ||||||||||||| |||||||| |||||| ||| |||| | |||| ||||
Sbjct 1286 TCAGACTTTCTCATCTTCTGTTTACTTCTTCCAACAAACTCAACGTTCTCTCTAGCAAAA 1345
Query 1683 TATCACCTGAAAACCTTCTTGAGGCTAAGAAACTCGCCAGCAGGACTT-CGCATCTCTTA 1741
| ||||| ||||| | || ||||| |||||||| |||| || | |||||||||
Sbjct 1346 TCCCACCTTCTAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAAC-CATCTCTTA 1404
Query 1742 AATAGTTGGGCTTATTTAATGAAGTCAATTCAGGCAAATGAGGTACCGTTTGATCAAGCG 1801
|| || ||||||||| |||| ||||| || |||| ||| |||| ||||||||||||||
Sbjct 1405 AACAGCTGGGCTTATCTAATCAAGTCCATCCAGGGGAATAAGGTGTCGTTTGATCAAGCG 1464
Query 1802 AGGGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAGTGGCTTTTGGAGAAG 1861
| || |||||||| |||||||||||||| || ||||| || || |||||| |||||||
Sbjct 1465 AAAGATCATCTCTTCGAGCTTACTCTGAAGAACAGGCTTAAGGAATGGCTTATGGAGAAA 1524
Query 1862 GT-CATCGAAAACCGCAACAC-TAAGGAATATGACTCTAAAGGGCTT-GGAGTGATCCAC 1918
|| | | ||| |||||||| | ||| ||||| |||||||| | | || |||||||||
Sbjct 1525 GTGCTT-GAAGGTCGCAACACATT-GGATTATGATTCTAAAGG-CATCGGTGTGATCCAC 1581
Query 1919 CTCTGTGCCGTCCTAGGATACACTTGGTCAATCCTTCTCTTCTCCTGGGCAAA-TATATC 1977
||||||||| | || |||||||||||||| ||| || ||||||| | || | ||||
Sbjct 1582 CTCTGTGCCATTCTTGGATACACTTGGTCGGTCCAGCTGTTCTCCTTGTCAGGCT-TATC 1640
Query 1978 GTTGGATTTCCGTGATAAGCAGGGTTGGACTGCTCTTCATTGGGCAGCATACTATGGAAG 2037
|||| ||||||||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct 1641 GTTGAATTTCCGTGATAAACAAGGCTGGACTGCTCTTCATTGGGCAGCATACTACGGAAG 1700
Query 2038 GGAGAAAATGGTGGCTGCTCTTCTATCTGCGGGGGCAAGGCCAAACCTGGTGACAGACCC 2097
|||||||||||||||||||||||| ||||| ||||| || || ||||| ||||||||| |
Sbjct 1701 GGAGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCGAGACCGAACCTAGTGACAGACTC 1760
Query 2098 TACTAAGGA-ATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAACAGAAA-GGTTAT 2155
|| ||||| | || | || || |||| ||| |||||| ||||||| || ||| || |||
Sbjct 1761 GACGAAGGATAATCTT-GGTGGATGCATGGCGGCTGATTTGGCACAGCA-AAACGGATAT 1818
Query 2156 GACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTG-TAGCACAGTTCA-AGGACATGC 2213
||||||||||| |||| |||||||||||||||| ||| | || ||||| | || |||||
Sbjct 1819 GACGGTTTAGCTGCTTATCTTGCTGAGAAATGT-TTGATTGCTCAGTTTAGAG-ACATGA 1876
Query 2214 AAACGGCTGGAAACATTAGTGGCAACCTTGAAACCAT-CAAGGCAGAGAAGTCGTCAAAT 2272
||| ||||||||||| ||||| | || || | | |||||| |||| || | ||
Sbjct 1877 AAATTGCTGGAAACATCAGTGGTGATCTGGAGGCT-TGCAAGGCGGAGATGTTG--AA-- 1931
Query 2273 CCAGGGAA-TGCAAATG-AAGAGGAGCAAAGCCTGAAGGACACTCTAGCGGCATACAGAA 2330
||| || | | | | |||| ||||| || || |||||| |||| || ||||||||||
Sbjct 1932 CCAAGGCACT-CTCCCGGAAGATGAGCAGAGTCTCAAGGACGCTCTTGCAGCATACAGAA 1990
Query 2331 CTGCTGCAGAGGCAGCGGCGCGGATTCAGGGAGCGTTCAGGGAGCACGAGCTGAA---AG 2387
| |||||||| |||||||| ||||||||||| ||||| ||||| | | |||||| ||
Sbjct 1991 CAGCTGCAGAAGCAGCGGCTCGGATTCAGGGTGCGTTTAGGGAAAAAGCGCTGAAGGCAG 2050
Query 2388 TTA-GGTCAAGCGC-AGTT-AGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACATAATAG 2444
| ||||||||| | || || ||||||| ||| |||||||| || || | |||||| |
Sbjct 2051 C-ACGGTCAAGCGTGA-TTCAG-TTTGCTAACAAAGAAGAAGAGGCTAAGAGCATAATCG 2107
Query 2445 CCGCGATGAAGATTCAGCACGCGTTTCGCAATT-TCGAGGTTCGTAGGAAGATTGCAGCC 2503
| ||||||||||||||| | ||||| || || | | || ||||||||||| | ||||
Sbjct 2108 CGGCGATGAAGATTCAGAATGCGTTCCGGAAATAT-GATACGCGTAGGAAGATAGAAGCC 2166
Query 2504 GCTG-CTCGGATTCAGTATAGGTTCCAAACATGGAAAATGAGGCGG-GAATTTCTGAACA 2561
||| | |||||||| | ||||||||||| |||||||| | | | || | ||||||||
Sbjct 2167 GCTTAC-CGGATTCAATGCAGGTTCCAAACTTGGAAAAT-ACGAAGAGAGTATCTGAACA 2224
Query 2562 TGCGAAAG--AAGGCAATTAGGATCCAGGCTGCGTTT-AGAGGTTTCCAAGTAAGAAGAC 2618
|||| | ||| |||||||||| |||||||| ||| || || || |||| ||| || |
Sbjct 2225 TGCGGC-GTCAAG-CAATTAGGATTCAGGCTGC-TTTCAGGGGATTACAAGCAAGGAGGC 2281
Query 2619 AGTACCAGAAAATAACATGGTCAGTGGGAGTTCTTG-AGAAGGCAATTCTGAGATGGAGA 2677
||||| |||| || |||||| || ||||| ||| |||||||| || |||| ||||||
Sbjct 2282 AGTACAAGAAGATTTTATGGTCGGTAGGAGTG-TTGGAGAAGGCAGTTTTGAGGTGGAGA 2340
Query 2678 CTGAAGAGAAAAGGATTCAGAGGCCTTCAGGTAAGTCAACCTGACGAGAAGGAAGG-GAG 2736
| ||||||||||| || ||||| || ||||| | || | || ||| | | |
Sbjct 2341 CAAAAGAGAAAAGGTTTTAGAGGACTCCAGGTT-G-CAGCA-GAGGAGGATTCTTCTG-G 2396
Query 2737 TGAGGCGGTGGAGGATTTCTACAAGACAAGCCAGAAACAAGCGGAGGAACGGCTTGAGAG 2796
|||||| ||| |||||||||||||||||||||| |||||| |||||| |||| |||||
Sbjct 2397 TGAGGCACAGGAAGATTTCTACAAGACAAGCCAGAGACAAGCAGAGGAAAGGCTCGAGAG 2456
Query 2797 GTCAGTGGTTAAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCA-GCAAGATTACAGAA 2855
|| || || |||||| ||||||||| |||| ||||||||||| | | ||||||||||
Sbjct 2457 ATCTGTAGTGCGAGTCCAAGCCATGTTCAGGTCTAAGAAGGCTCAAG-AGGATTACAGAA 2515
Query 2856 GGATGAAACTGGCTCATGAAGAAGCTCAGCTGGAGTATGAT 2896
||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 2516 GGATGAAACTGACTCATGAAGAAGCTCAGTTGGAGTACGAT 2556
Score = 390 bits (211), Expect = 3e-107
Identities = 350/418 (84%), Gaps = 6/418 (1%)
Strand=Plus/Plus
Query 194 ATCGGCTCTGAGATTCATGGATTCCATACTTTACAAGATCTAGATATACAAACAATGTTA 253
|||||||| |||||||||||||||||||| ||||||||||| ||| | || ||||||||
Sbjct 28 ATCGGCTCGGAGATTCATGGATTCCATACCTTACAAGATCTTGATGTCCAGACAATGTTG 87
Query 254 GATGAAGCATACAGTAGGTGGCTCCGTCCTAATGAGATCCATGCTCTTCTCTG-TAACCA 312
|| |||||| | || |||||||| || || || ||||||||||| | ||| | |||||
Sbjct 88 GAAGAAGCAAAAAGCAGGTGGCTACGGCCAAACGAGATCCATGCAATCCTC-GCTAACCC 146
Query 313 TAAATTCTTCACCATCAACGTCAAGCCTGTGAACTTACCCAAAAGTGGTACG-ATTGTGT 371
|| || |||||||||||| |||||||| |||||||||||||| | ||| | | || | |
Sbjct 147 TATATACTTCACCATCAATGTCAAGCCGGTGAACTTACCCAATACTGGCA-GAATAATAT 205
Query 372 TGTTTGATCGTAAGATGTTGAGGAACTTTAGAAAGGATGGTCATAACTGGAAAAAGAAAA 431
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 206 TGTTCGACCGTAAGATGTTGAGGAACTTCAGAAAGGATGGTCATAACTGGAAAAAGAAAA 265
Query 432 AGGATGGAAAGACAATTAAGGAAGCTCATGAACATCTAAAAGTTGGTAATGAGGAAAGGA 491
||||||||| ||| ||||||| ||||||||||| || ||||||||| | ||||||||||
Sbjct 266 AGGATGGAAGGACTGTTAAGGAGGCTCATGAACACCTGAAAGTTGGTGACGAGGAAAGGA 325
Query 492 TTCATGTTTATTATGCCCACGGTGAGGATACCCCTACATTTGTGCGAAGGTGTTACTGGT 551
||||||| || ||||| |||||||| |||| | |||| ||||| ||||||||||| ||||
Sbjct 326 TTCATGTATACTATGCGCACGGTGAAGATAACACTACCTTTGTTCGAAGGTGTTATTGGT 385
Query 552 TATTGGATAAGTCTC-AGGAGCACATAGTTCTTGTCCACTATCGCGAGACACATGAGG 608
|| | |||||| ||| || || |||| || || || || || || || ||||| ||||
Sbjct 386 TACTAGATAAGGCTCGAG-AGAACATCGTCCTCGTACATTACCGTGATACACAGGAGG 442
> Ahg938812 jgi|Araly1|938812|scaffold_503003.1
Length=563
Score = 108 bits (58), Expect = 3e-22
Identities = 77/86 (90%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 145 TCGGCCGTATCTGAAACCGGAGATGGCCGGCGTTGATTCCGGCAAGCTTATCGGCTCTGA 204
|||| | || |||||| |||||||||||| |||||||||||| | |||||||||||||||
Sbjct 1 TCGGACTTACCTGAAA-CGGAGATGGCCGACGTTGATTCCGGTAGGCTTATCGGCTCTGA 59
Query 205 GATTCATGGATTCCATACTTTACAAG 230
||||||||||||||||| ||| ||||
Sbjct 60 GATTCATGGATTCCATATTTTGCAAG 85
> Ahg940479 jgi|Araly1|940479|scaffold_601023.1
Length=391
Score = 82.4 bits (44), Expect = 2e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 175 CGTTGATTCCGGCAAGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTACAAG 230
|||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 173 CGTTGATTCCGGTAGGCTTATCGGCTCTGAGATTCATGGATTCCATATTTTGCAAG 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120212813220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5