BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16190.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946655 jgi|Araly1|946655|scaffold_702884.1 1893 0.0
> Ahg946655 jgi|Araly1|946655|scaffold_702884.1
Length=1164
Score = 1893 bits (1025), Expect = 0.0
Identities = 1119/1165 (96%), Gaps = 3/1165 (0%)
Strand=Plus/Plus
Query 26 TCTCTTGGAAA-CCAAGAAGCATGGATCGTGTGGTCTTCTTCTTCCTCATCGCAGCTACG 84
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCTCTCGGAAACCCAAGAAGAATGGATCGTGTGGTCTTCTTCTTCCTCATCGCAGCCACG 60
Query 85 TTACTAGCAGGTTCTCTCGGATCTACCGTCATCTCCGGCGAGGTTACCGACGGTTTCGTT 144
|||||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 61 TTACTAGCAGTTTCTCTCGGATCCGCCGTCATCTCCGGCGAGGTAAACGACGGTTTCGTT 120
Query 145 AACCCGATCAGGCAAGTCGTCCCGGAGGAGAACGATGAACAACTCCTCAACGCAGAACAT 204
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AACCCGATCAGGCAAGTCGTCCCGGAGGAGAACGATGAACATCTCCTCAACGCAGAACAT 180
Query 205 CACTTCACTCTATTCAAATCCAAGTACGAGAAGACTTACGCGACTCAGGTAGAGCACGAT 264
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CACTTCTCTCTATTCAAATCCAAGTACGAGAAGACTTACGCGACTCAGGAAGAGCACGAT 240
Query 265 CATCGGTTCCGTGTCTTCAAAGCTAACCT-AAGACGAGCTAGGCGTAACCAGCTTCTAGA 323
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 241 CATCGGTTCCGTGTCTTCAAAGCTAACCTAAAG-CGAGCTAGGCGGAACCAGCTTCTAGA 299
Query 324 TCCGTCTGCCGTCCACGGCGTCACGCAGTTCTCAGATCTTACTCCGAAAGAATTCCGCCG 383
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCGTCTGCTGTCCACGGCGTCACGCAGTTCTCAGATCTTACTCCGAAAGAATTCCGCCG 359
Query 384 CAAGTTTTTAGGACTGAAACGCCGAGGGTTTCGTCTTCCTACTGATACTCAGACGGCGCC 443
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAGTTTTTAGGGCTGAAACGCCGAGGGTTTCGTCTTCCTACTGATACTCAGACGGCGCC 419
Query 444 TATTCTTCCGACTAGCGATCTTCCGACGGAGTTCGATTGGCGTGAACAAGGAGCCGTCAC 503
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GATTCTTCCGACTAGCGATCTTCCGACGGAGTTCGATTGGCGTGAGCAAGGAGCCGTCAC 479
Query 504 ACCTGTTAAAAACCAGGGTATGTGTGGTTCATGCTGGTCATTTAGTGCGATAGGAGCTCT 563
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 480 ACCTGTTAAAAACCAGGGTATGTGTGGTTCATGCTGGTCTTTTAGTGCTATTGGAGCTCT 539
Query 564 TGAAGGAGCACATTTTCTAGCCACTAAAGAGCTTGTTAGCCTCAGTGAGCAGCAGCTCGT 623
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TGAAGGAGCACATTTTCTAGCGACTAAAGAGCTTGTTAGCCTCAGTGAGCAGCAGCTTGT 599
Query 624 AGATTGTGACCATGAGTGTGATCCAGCACAAGCCAATTCATGTGATTCTGGTTGCAGTGG 683
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 AGATTGTGACCATGAGTGTGATCCAGCACAAGCCAATTCATGTGACTCTGGTTGCAGTGG 659
Query 684 AGGACTAATGAACAACGCTTTTGAGTACGCTCTTAAAGCTGGTGGTCTAATGAAGGAAGA 743
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 660 AGGACTAATGAACAATGCTTTTGAGTACGCTCTCAAAGCTGGTGGTCTTATGAAGGAAGA 719
Query 744 GGACTATCCTTATACAGGACGTGACCATACCGCTTGTAAGTTCGACAAGAGCAAGATTGT 803
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 720 AGACTATCCTTATACAGGACGTGACAATACCGCTTGCAAATTCGACAAGAGCAAGATTGC 779
Query 804 TGCGAGTGTGTCTAACTTCAGCGTTGTCTCTTCGGATGAAGACCAAATCGCTGCTAATCT 863
|||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 TGCGAGCGTTTCTAATTTCAGCGTTGTCTCTTCAGATGAAGACCAAATCGCTGCTAATCT 839
Query 864 AGTCCAGCATGGACCTCTAGCTATTGCTATCAATGCGATGTGGATGCAAACATACATAGG 923
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGTCAAGCACGGACCTCTAGCTATTGCTATCAATGCGATGTGGATGCAAACATACATAGG 899
Query 924 AGGAGTCTCGTGCCCGTATGTATGTTCAAAGAGCCAAGACCATGGAGTGCTCTTGGTTGG 983
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGAGTCTCGTGTCCATATGTATGTTCAAAGAGCCAAGACCATGGAGTGCTCTTGGTTGG 959
Query 984 ATTTGGTTCATCGGGTTATGCACCAATCCGTCTTAAGGAGAAGCCTTATTGGATTATCAA 1043
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 960 ATTTGGTTCATCGGGTTATGCGCCAATCCGTCTTAAGGAGAAGCCTTATTGGATTATTAA 1019
Query 1044 GAACTCGTGGGGAGCGATGTGGGGAGAGCATGGTTACTACAAAATCTGCAGAGGGCCTCA 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 GAACTCGTGGGGAGCGATGTGGGGAGAGCATGGTTACTACAAAATCTGCAGAGGACCTCA 1079
Query 1104 TAATATGTGTGGTATGGATACAATGGTATCTACTGTTGCTGCTGTTCATACCTCACCCAA 1163
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TAATATGTGTGGTATGGACACAATGGTATCTACTGTTGCTGCTGTTCATACCTCACCCAA 1139
Query 1164 GTAGAATTATTAGGACACTACCTGT 1188
||||||||||||||||||||| |||
Sbjct 1140 GTAGAATTATTAGGACACTACTTGT 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5