BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16250.1
Length=3495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946646 jgi|Araly1|946646|scaffold_702875.1 5511 0.0
Ahg480851 jgi|Araly1|480851|fgenesh2_kg.3__3552__AT2G18790.1 2569 0.0
> Ahg946646 jgi|Araly1|946646|scaffold_702875.1
Length=3539
Score = 5511 bits (2984), Expect = 0.0
Identities = 3330/3498 (95%), Gaps = 20/3498 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTCCGGAGGTGGTAGCAAAACCAGCGGTGGAGAGGCAGCTTCCTCAGGCCAT--C 58
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 22 ATGGTCTCCGGAAGCGGTAGCAAAACCAGCGGTGGTGAGGCAGCTTCCTCAGGCCATCGC 81
Query 59 G-C---CGAAGTCGTCACACCAGCGCTGCAGAACAAGCTCAGTCGTCAGCAAACAAAGCC 114
| | || || |||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct 82 GTCAATCGGAGCCGTCACACCA--GC-GCAGAACAAGCTCAGTCGTCAGCAAGCAAAGCC 138
Query 115 CTAAGGTCACAGAATCAGCAGCCACAAAACCACGGTGGCGGAACAGAGTCCACAAACAAA 174
||||||||||||||||||||||| ||||||||||| | |||||| || ||||||| ||||
Sbjct 139 CTAAGGTCACAGAATCAGCAGCCGCAAAACCACGGCGCCGGAACGGAATCCACAAGCAAA 198
Query 175 GCTATTCAACAGTACACTGTCGACGCGAGACTCCACGCCGTCTTCGAACAATCCGGAGAG 234
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 199 GCAATTCAACAGTACACTGTCGACGCGAGACTTCACGCCGTCTTCGAACAATCCGGAGAG 258
Query 235 TCAGGTAAGTCGTTTGATTACTCACAGTCTCTTAAAACGGCGCCGTACGATTCC-TCCGT 293
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 259 TCAGGTAAGTCGTTCGATTACTCGCAGTCTCTTAAAACGGCGCCGTACGA-TCCTTCCGT 317
Query 294 ACCAGAGCAGCAGATCACAGCTTATCTCTCCCGGATCCAACGCGGTGGCTATACCCAGCC 353
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 318 ACCGGAGCAGCAGATCACAGCTTATCTCTCGCGGATCCAACGCGGTGGCTATACCCAGCC 377
Query 354 TTTTGGCTGCTTGATCGCCGTCGAAGAATCCACTTTCACAATCATCGGTTACAGTGAAAA 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 378 TTTTGGCTGCTTGATCGCCGTCGAAGAATCCACCTTCACAATCATCGGTTACAGTGAAAA 437
Query 414 TGCGCGGGAAATGCTAGGGCTCATGTCTCAATCTGTACCAAGCATCGAGGACAAATCAGA 473
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 438 TGCGCGGGAAATGCTAGGGCTCATGTCTCAATCTGTACCAAGCATCGAGGAGATATCGGA 497
Query 474 GGTT-TTAACGATTGGTACGGATTTGCGATCTCTCTTCAAGTCATCGAGCTA-CCTTCTC 531
|||| || ||||||||||| |||||||||||||||||||||||||||||| | | |||||
Sbjct 498 GGTTCTT-ACGATTGGTACTGATTTGCGATCTCTCTTCAAGTCATCGAGC-ATCGTTCTC 555
Query 532 CTCGAGCGCGCGTTCGTGGCTCGAGAGATCACGCTTCTGAATCCTATTTGGATTCACTCT 591
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 556 CTCGAACGCGCGTTCGTGGCTCGAGAGATCACACTTCTGAATCCGATTTGGATTCACTCT 615
Query 592 AACAACACTGGTAAACCTTTCTACGCGATTCTCCACAGGGTTGATGTTGGAATTTTGATC 651
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 616 AAGAACACTGGTAAACCTTTTTACGCGATTCTCCACAGGGTTGATGTTGGAATTTTGATC 675
Query 652 GATTTAGAGCCGGCTCGAACCGAAGATCCGGCACTTTCAATCGCCGGAGCAGTCCAATCG 711
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 676 GATTTAGAGCCGGCTCGAACCGAGGACCCGGCGCTTTCAATCGCCGGAGCAGTCCAATCG 735
Query 712 CAGAAACTTGCGGTACGTGCGATTTCTCATTTACAATCGTTGCCTAGCGGCGACATTAAG 771
|||||||||||||| ||||||||||||||||||||||| || ||| | || ||||| |||
Sbjct 736 CAGAAACTTGCGGTCCGTGCGATTTCTCATTTACAATCCTTACCTGGAGGAGACATCAAG 795
Query 772 CTTCTATGTGACACTGTTGTGGAAAGCGTTAGAGATCTTACTGGCTACGACCGCGTTATG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CTTCTATGTGACACTGTTGTGGAAAGCGTTAGAGATCTTACTGGCTACGACCGCGTTATG 855
Query 832 GTGTACAAGTTTCATGAAGATGAACATGGTGAAGTCGTAGCCGAGAGTAAACGGAACGAT 891
||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 856 GTGTACAAGTTTCATGAAGATGAACATGGCGAAGTCGTAGCGGAGAGTAAACGGGACGAT 915
Query 892 TTAGAGCCTTACATTGGTCTGCATTATCCCGCTACTGATATTCCTCAGGCATCTCGGTTC 951
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 916 TTAGAGCCTTACATCGGTCTGCATTATCCGGCTACTGATATTCCTCAGGCATCTCGGTTC 975
Query 952 TTGTTCAAGCAAAACCGTGTTAGGATGATAGTAGATTGCTATGCGTCACCGGTTCGTGTG 1011
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 976 TTGTTCAAGCAGAACCGTGTTAGGATGATTGTAGATTGCTATGCGTCACCGGTTCGTGTG 1035
Query 1012 GTTCAAGACGATAGGCTCACGCAGTTTATATGCTTGGTGGGTTCGACTTTGCGAGCTCCT 1071
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1036 GTTCAAGACGATAGGCTAACGCAGCCTATATGCTTGGTGGGTTCGACTTTGCGAGCTCCT 1095
Query 1072 CATGGCTGTCATGCTCAATACATGACTAACATGGGCTCTATTGCGTCGTTAGCTATGGCA 1131
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1096 CATGGCTGTCACGCTCAATACATGACTAACATGGGCTCTATTGCGTCGTTAGCCATGGCA 1155
Query 1132 GTTATAATAAATGGAAACGAAGAAGATGGTAA---TGGGGTTAATACTGGAGGAAGAAAC 1188
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1156 GTTATAATAAATGGAAACGAAGAAGATGGTAACGGTGGTGTTAATACTGGAGGAAGAAAC 1215
Query 1189 TCGATGAGGCTTTGGGGTTTAGTTGTTTGCCATCACACATCAGCTCGTTGCATACCTTTT 1248
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1216 TCGATGAGGCTTTGGGGTTTAGTTGTTTGCCATCACACATCGGCTCGTTGCATACCTTTT 1275
Query 1249 CCTTTGAGGTACGCTTGTGAGTTTCTTATGCAGGCCTTTGGCTTACAGCTAAACATGGAG 1308
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CCTTTGAGGTATGCTTGTGAGTTTCTTATGCAGGCCTTTGGCTTACAGCTAAACATGGAG 1335
Query 1309 TTGCAGTTAGCCTTGCAGGTGTCTGAAAAACGCGTTCTGAGAATGCAGACACTATTATGT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1336 TTGCAGTTAGCCTTGCAGGTGTCTGAAAAACGCGTTCTGAGAATGCAGACACTGTTATGC 1395
Query 1369 GATATGCTTCTACGTGACTCACCAGCGGGGATTGTCACGCAGAGGCCTAGTATCATGGAT 1428
||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1396 GATATGCTTCTGCGTGCCTCACCCGCGGGAATTGTCACGCAGAGGCCTAGTATCATGGAT 1455
Query 1429 TTAGTAAAATGTAATGGTGCGGCATTTCTTTACCAAGGGAAGTATTATCCGTTGGGTGTG 1488
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TTAGTAAAATGTAACGGTGCTGCATTTCTTTACCAAGGGAAGTATTATCCGTTGGGTGTG 1515
Query 1489 ACTCCAACTGATTCTCAGATTAATGACATTGTGGAGTGGTTGGTTGCTAACCATTCTGAT 1548
|||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1516 GCTCCGACTGAGGCTCAGATAAATGACATTGTGGAGTGGTTGCTTGCTAACCATTCTGAT 1575
Query 1549 TCTACCGGGTTAAGCACAGATAGTTTAGGCGATGCGGGTTATCCTCGGGCAGCTGCTTTG 1608
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 TCAACCGGGTTAAGCACAGATAGTTTAGGCGATGCGGGTTATCCTCGGGCAGCTGCTTTG 1635
Query 1609 GGAGATGCTGTGTGCGGTATGGCAGTCGCGTGTATCACAAAAAGGGACTTCCTTTTCTGG 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 GGAGATGCTGTGTGCGGTATGGCAGTCGCGTGTATCACAAAAAGGGACTTCCTTTTCTGG 1695
Query 1669 TTTCGGTCTCATACTGAGAAAGAAATCAAATGGGGAGGGGCTAAGCACCATCCTGAGGAC 1728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 TTTCGGTCTCATACTGAGAAAGAAATCAAATGGGGAGGGGCTAAGCACCATCCTGAGGAT 1755
Query 1729 AAAGATGATGGTCAGCGGATGAATCCGCGTTCTTCGTTCCAGACTTTTCTCGAAGTTGTT 1788
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1756 AAAGATGATGGTCAGCGGATGCATCCGCGTTCTTCGTTCCAGGCTTTTCTCGAAGTTGTT 1815
Query 1789 AAGAGCCGATGTCAGCCATGGGAAACTGCTGAAATGGACGCCATTCACTCGCTCCAGCTT 1848
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1816 AAGAGCCGATGTCAGCCATGGGAAACTGCTGAAATGGACGCTATTCATTCGCTCCAGCTT 1875
Query 1849 ATTCTAAGAGACTCTTTCAAAGAGTCTGAAGCGATGGACTCTAAAGCTGCTGCAGCTGGG 1908
||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 1876 ATTCTAAGAGATTCTTTCAAAGAGTCTGAAGCGGTGGACACTAAAGCTTCTGCACCTGGG 1935
Query 1909 GCGGTTCAGCCACATGGAGATGATATGGTACAGCAAGGGATGCAGGAGATAGGTGCAGTT 1968
||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 1936 GCGGTTCAGCCACATGGGGATGATATGGCAGAGCAAGGGATGCAGGAGATAGGTGCAGTT 1995
Query 1969 GCAAGAGAGATGGTTAGGCTCATTGAGACTGCGACGGTTCCTATATTTGCTGTGGACATA 2028
|| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1996 GCGAGAGAGATGATTAGGCTTATTGAGACTGCGACGGTTCCTATATTAGCTGTGGACATT 2055
Query 2029 GACGGTTGCATCAATGGGTGGAACGCCAAGATCGCAGAGCTGACCGGTCTTTCTGTTGAA 2088
|| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2056 GATGGCTGCATCAATGGGTGGAATGCCAAGATCGCAGAGCTGACTGGTCTTTCTGTTGAA 2115
Query 2089 GACGCTATGGGAAAGTCGCTGGTTCGCGAATTGATATACAAAGAGTACAAAGAAACAGTT 2148
|| |||||||||||||| || |||||||| |||||||||||||||||| |||||||||||
Sbjct 2116 GAAGCTATGGGAAAGTCTCTTGTTCGCGATTTGATATACAAAGAGTACGAAGAAACAGTT 2175
Query 2149 GATAGGCTTCTTTCTTGTGCTCTCAAAGGGGATGAAGGCAAGAATGTGGAGGTCAAGCTG 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 GATAGGCTTCTTTCTTGTGCTCTCAAAGGGGATGAAGGCAAGAATGTGGAGGTCAAGCTG 2235
Query 2209 AAAACTTTTGGTTCCGAGCTACAAGGAAAAGCAATGTTTGTGGTTGTCAACGCATGTTCA 2268
|||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct 2236 AAAACTTTTGGTCCCGAGCTACAAGGGAAAGCAGTGTTTGTGGTTGTCAACGCATGCTCA 2295
Query 2269 AGCAAGGACTACTTAAACAACATCGTTGGAGTCTGCTTTGTTGGACAAGATGTAACTGGT 2328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2296 AGCAAGGACTACTTAAACAACATCGTTGGAGTCTGCTTTGTTGGACAAGATGTAACCGGT 2355
Query 2329 CATAAAATTGTTATGGACAAGTTCATCAACATACAAGGTGATTACAAGGCCATCATCCAT 2388
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2356 CATAAAATTGTTATGGACAAGTTCATCAACATACAAGGCGATTACAAGGCCATCATCCAT 2415
Query 2389 AGCCCGAACCCTCTGATCCCTCCAATCTTTGCAGCGGATGAGAATACGTGCTGCCTTGAG 2448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 AGCCCGAACCCTCTGATCCCTCCAATCTTTGCAGCGGATGAGAATACGTGCTGCCTTGAG 2475
Query 2449 TGGAACACTGCAATGGAAAAGCTCACAGGCTGGCCTCGCAGCGAAGTGATTGGAAAATTA 2508
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2476 TGGAACACCGCAATGGAAAAGCTCACAGGGTGGCCTCGCAGCGAAGTGATTGGAAAATTG 2535
Query 2509 CTTGTTAGGGAAGTATTTGGGAGCTATTGCAGACTAAAGGGTCCTGATGCGTTAACTAAG 2568
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2536 CTTGTTAGGGAAGTATTTGGGAGCTGTTGCAGACTAAAGGGTCCTGATGCGTTAACTAAG 2595
Query 2569 TTCATGATCGTCTTGCATAACGCGATCGGTGGCCAAGATACTGATAAATTCCCATTCCCG 2628
||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 2596 TTCATGATCGTTTTGCATAACGCGATTGGTGGCCAAGAAACGGATAAATTCCCATTCCCG 2655
Query 2629 TTCTTTGATCGCAAAGGGGAATTCATTCAGGCTCTCCTGACTTTGAACAAACGGGTCAGC 2688
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2656 TTCTTTGACCGTGAAGGGAAATTCATTCAGGCTCTCCTGACTTTGAACAAACGGGTCAGC 2715
Query 2689 ATCGATGGCAAAATCATTGGGGCTTTCTGTTTTTTGCAGATACCGAGTCCCGAGCTGCAG 2748
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2716 GTCGACGGCAAAATCATTGGGGCTTTCTGTTTTTTGCAGATACCGAGTCCAGAGCTGCAG 2775
Query 2749 CAAGCTCTAGAAGTTCAGAGGAGGCAGGAGAGTGAATATTTCTCAAGGAGGAAAGAGTTG 2808
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2776 CAAGCTCTAGAAGTCCAGAGGAGGCAGGAGAGTGAATACTTCTCAAGGAGGAAAGAGTTG 2835
Query 2809 GCTTACATTTTCCAAGTTATAAAGAATCCATTGAGTGGATTGCGTTTCACAAATTCATTG 2868
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2836 GCTTACATTTTCCAAGTTATAAAGAATCCATTGAGCGGATTGCGTTTCACAAATTCATTG 2895
Query 2869 CTGGAAGAC-ATGGATTTAAACGAGGATCAGAAGCAGCTTCTTGAAACGAGTGTTTCATG 2927
||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2896 CTGGAAG-CTACGGATTTAAACGAGGATCAGAAGCAGCTTCTTGAAACAAGTGTTTCATG 2954
Query 2928 TGAGAAGCAGATCTCAAAGATTGTAGGAGACATGGACGTCAAAAGCATAGATGACGGTTC 2987
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2955 CGAGAAGCAGATCTCAAAGATTGTAGGAGACATGGACGTCAAAAGCATTGAAGACGGTTC 3014
Query 2988 ATTTCTGCTAGAGAGAACAGAGTTCTTCATTGGCAATGTCACAAATGCAGTGGTAAGCCA 3047
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 3015 ATTTCTGCTAGAGAGAACAGAGTTCTTCATTGGCAGTGTCATAAATGCAGTGGTAAGCCA 3074
Query 3048 AGTCATGTTGGTGGTGAGAGAGAGAAATCTCCAGCTGATCCGTAACATTCCCACGGAGGT 3107
||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 3075 AGTCATGTTTGTGGTGAGAGAGAGAAATATTCAGCTGATCCGTAACATTCCCACGGAGAT 3134
Query 3108 CAAATCCATGGCTGTCTACGGTGACCAGATAAGGCTCCAACAGGTTCTCGCAGAATTTCT 3167
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 3135 CAAATCCATGGCTGTTTACGGTGACCAGATAAGGCTCCAACAGGTTCTAGCAGAATTTTT 3194
Query 3168 GCTAAGTATTGTCCGTTATGCACCCATGGAAGGCTCGGTAGAGCTCCATCTATGCCCGAC 3227
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 3195 GCTAAGTATTGTCCGTTATGCGCCCATGGAAGGCTCAGTAGAGCTCCATCTATGCCCGGT 3254
Query 3228 TCTGAACCAAATGGCTGACGGATTCTCCGCTGTACGTTTGGAGTTCAGAATGGCGTGTGC 3287
|||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 3255 TCTGAAACAAATGGCTGACGGGTTCTCCGCTATACGCTTGGAGTTCAGAATGGCGTGTGC 3314
Query 3288 AGGGGAAGGTGTGCCGCCAGAGAAAGTGCAAGACATGTTCCATAGTAGCCGATGGACAAG 3347
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3315 AGGGGAAGGTGTGCCGCCAGAGAAAGTGCAGGACATGTTCCATAGTAGCCGATGGACAAG 3374
Query 3348 TCCAGAAGGATTAGGACTAAGCGTTTGCAGAAAGATTTTGAAGCTGATGAACGGAGGGGT 3407
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 3375 TCCAGAAGGATTAGGACTAAGCGTTTGCAGAAAGATTCTGAAGCTGATGAACGGAAGGGT 3434
Query 3408 TCAGTACATAAGAGAATTCGAACGCTCTTATTTCCTAATCGTTATCGAACTCCCGGTTCC 3467
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3435 TCAGTACATAAGGGAATTCGAACGCTCTTATTTCCTAATCGTTATAGAACTCCCGGTTCC 3494
Query 3468 TCTAATGATGATGATGCC 3485
||| ||||||||||||||
Sbjct 3495 TCTGATGATGATGATGCC 3512
> Ahg480851 jgi|Araly1|480851|fgenesh2_kg.3__3552__AT2G18790.1
Length=3848
Score = 2569 bits (1391), Expect = 0.0
Identities = 2717/3352 (81%), Gaps = 112/3352 (3%)
Strand=Plus/Plus
Query 171 CAAAGCTATTCAACAGTACACTGTCGACGCGAGACTCCACGCCGTCTTCGAACAATCCGG 230
|||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 243 CAAAGCAATTCAACAGTACACCGTCGACGCAAGACTCCACGCCGTTTTCGAACAATCCGG 302
Query 231 AGAGTCAGGTAAGTCGTTTGATTACTCACAGTCTCTTAAAACGGCGCCGTACGATTCCTC 290
|| ||||| || || || || |||||||| || || |||||| || |||||| ||||||
Sbjct 303 CGAATCAGGGAAATCATTCGACTACTCACAATCACTCAAAACGACGACGTACGGTTCCTC 362
Query 291 CGTACCAGAGCAGCAGATCACAGCTTATCTCTCCCGGATCCAACGCGGTGGCTATACCCA 350
||||| ||||| |||||||| ||||||||||| || ||||| || ||||| || | ||
Sbjct 363 TGTACCTGAGCAACAGATCACTGCTTATCTCTCTCGAATCCAGCGAGGTGGTTACATTCA 422
Query 351 GCCTTTTGGCTGCT-TGATCGCCGTCGAAGAATCCA-CTTTCACAATCATCGGTTACAGT 408
|||||| || || | ||||||||||||| ||||| | |||| |||||||||||||||
Sbjct 423 GCCTTTCGGATG-TATGATCGCCGTCGATGAATCAAGTTTTC-GAATCATCGGTTACAGC 480
Query 409 GAAAATGCGC-GGGAAATGCTAGGGCTCATGTCTCAATCTGTACCAAGCATCGAGGACAA 467
||||| || | | |||||| ||||||| ||| |||||||||| || | | || || ||
Sbjct 481 GAAAACGC-CAGAGAAATGTTAGGGCTTATGCCTCAATCTGTTCCTA-C-TC-TTGAGAA 536
Query 468 ATCAGAGGTTTTAACGATTGGTACGGATTTGCGATCTCTCTTCAAGTCATCGAGCTAC-C 526
| | ||| || || | || || || ||| || ||||| | |||| || ||||||| |
Sbjct 537 ACCTGAGATTCTAGCTATGGGAACTGATGTGAGATCTTTGTTCACTTCTTCGAGCT-CGA 595
Query 527 TTCTCCTCGAGCGCGCGTTCGTGGCTCGAGAGATCACGCTT-CTGAATCCTATTTGGATT 585
|| | |||||||| || ||||| ||||||||||| || ||| |||||||| |||||||
Sbjct 596 TTTTACTCGAGCGTGCTTTCGTTGCTCGAGAGATTAC-CTTGTTGAATCCTGTTTGGATC 654
Query 586 CACTCTAACAACACTGGTAAACC-TTTCTACGCGATTCTCCACAGGGTTGATGTTGGAAT 644
|| || || || ||||||||||| ||| ||||| ||||| || ||| |||||||||| |
Sbjct 655 CATTCCAAGAATACTGGTAAACCGTTT-TACGCCATTCTTCATAGGATTGATGTTGGTGT 713
Query 645 T-TTGATCGATTTAGAGCCGGCTCGAACCGAAGATCCGGCACTTTCAATCGCCGGAGCAG 703
| || || ||||||||||| ||| |||| |||||||| || ||||| || || || || |
Sbjct 714 TGTT-ATTGATTTAGAGCCAGCTAGAACTGAAGATCCTGCGCTTTCTATTGCTGGTGCGG 772
Query 704 TCCAATCGCAGAAACTTGCGGTACGTGCGATTTCTCATTTACAATCGT-TGCCTAGCGGC 762
| |||||||||||||| ||||| ||||||||||| || ||||| || | | || | ||
Sbjct 773 TTCAATCGCAGAAACTCGCGGTTCGTGCGATTTCGCAGTTACAGTC-TCTTCCCGGGGGT 831
Query 763 GACATTAAGCTTCTATGTGACACTGTTGTGGAAAGCGTTAGAGATCTT-ACTGGCTACGA 821
|| ||||||||| | ||||| |||||||||||||| || || || ||| ||||| || ||
Sbjct 832 GATATTAAGCTTTTGTGTGATACTGTTGTGGAAAGTGTGAGGGA-CTTGACTGGGTATGA 890
Query 822 CCGCGTTATGGTGTACAAGTTTCATGAAGATGAACATGGTGAAGTCGTAGCCGAGAGTAA 881
|| |||||||| || ||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 891 TCGTGTTATGGTTTATAAGTTTCATGAAGATGAGCATGGAGAAGTTGTAGCTGAGAGTAA 950
Query 882 ACGGA-ACGATTTAGAGCCTTACATTGGTCTGCATTATCCCGCTACTGATATTCCTCAGG 940
| || | |||||||||||||| ||||| ||||||||||| ||||||||| ||||||| |
Sbjct 951 GC-GAGATGATTTAGAGCCTTATATTGGACTGCATTATCCTGCTACTGATCTTCCTCAAG 1009
Query 941 CATCTCGGTTCTTGTTCAAGCAAAACCGTGTTAGGATGATAGTAGATTGCTATGCGTCAC 1000
| || ||||||||||| ||||| |||||||| | ||||||||||||||| |||| |||
Sbjct 1010 CGTCACGGTTCTTGTTTAAGCAGAACCGTGTCCGAATGATAGTAGATTGCAATGCCACAC 1069
Query 1001 CGGTTCGTGTGGTTCAAGACGATAGGCTCACGCAGTTTATATGCTTGGTGGGTTCGACT- 1059
| |||| |||||| || ||||||||||| || || | ||| |||||||| ||||| |||
Sbjct 1070 CCGTTCTTGTGGTCCAGGACGATAGGCTAACTCAATCTATGTGCTTGGTTGGTTCTACTC 1129
Query 1060 TTGCGAGCTCCTCATGGCTGTCA-TGCTCAATACATGACTAACATGGGCTCTATTGCGTC 1118
|| | ||||||||||| ||||| | |||| || ||| |||||||||| |||||||| ||
Sbjct 1130 TT-AGGGCTCCTCATGGTTGTCACT-CTCAGTATATGGCTAACATGGGATCTATTGCTTC 1187
Query 1119 GTTAGCTATGGCAGTTATAATAAATGGAAACGAAGAAGATGGTAATGGGGTTAATA-CTG 1177
||||||||||| ||||||||||||||||| ||||||||||| | | | || ||
Sbjct 1188 TTTAGCTATGGCGGTTATAATAAATGGAAATGAAGAAGATGG-GA--GCAAT-GTAGCTA 1243
Query 1178 GAGGAAGAAACTCGATGAGGCTTTGGGGTTTAGTTGTTTGCCATCACACATCAGCTCGTT 1237
| || |||| ||||||||||||||||||||| || |||||||||||||| || |||| |
Sbjct 1244 GTGGGAGAAGCTCGATGAGGCTTTGGGGTTTGGTCGTTTGCCATCACACTTCTTCTCGCT 1303
Query 1238 GCATACCTTTTCCTTTGAGGTACGCTTGTGAGTTTCTT-ATGCAGGCCTTT-GGCTTACA 1295
| ||||| ||||| | ||||| |||||||||||| || ||||||| |||| || |||||
Sbjct 1304 GTATACCGTTTCCGCTAAGGTATGCTTGTGAGTTT-TTGATGCAGG-CTTTCGGTTTACA 1361
Query 1296 GCTAAACATGGAGTTGCAGTTAGCCTTGCAGGTGTCTGAAAAACGCGTTCTGAGAATGCA 1355
| |||||||||| ||||||||||| ||||| |||| || ||||||||| |||||| |||
Sbjct 1362 GTTAAACATGGAATTGCAGTTAGCTTTGCAAATGTCAGAGAAACGCGTTTTGAGAACGCA 1421
Query 1356 GACACTATTATGTGATATGCTTCTACGTGACTCACCAGCGGGGATTGTCACGCAGAGGCC 1415
||| || ||||| ||||||||||| |||||||| || || || ||||| || ||||| ||
Sbjct 1422 GACGCTGTTATGCGATATGCTTCTGCGTGACTCGCCTGCTGGAATTGTTACACAGAGTCC 1481
Query 1416 TAGTATCATGGATTTAGTAAAATGTAATGGTGCGGCATTTCTTTACCAAGGGAAGTATTA 1475
|||||||||||| ||||| |||||| | ||||| |||||||||||||| |||||||||||
Sbjct 1482 TAGTATCATGGACTTAGTTAAATGTGACGGTGCAGCATTTCTTTACCACGGGAAGTATTA 1541
Query 1476 TCCGTTGGGTG-TGACTCCAACTG-ATTCTCAGATTAATGACATTGTGGAGTGGTTGGTT 1533
|||||||||| || |||| | || | | |||||| || || |||||||||||||| ||
Sbjct 1542 CCCGTTGGGTGTTG-CTCCTAGTGAAGT-TCAGATAAAAGATGTTGTGGAGTGGTTGCTT 1599
Query 1534 GCTAACCATTCTGATTCTACCGGGTTAAGCACAGATAGTTTAGGCGATGCGGGTTATCCT 1593
|| || || | ||||| || || |||||||| ||||| |||||||||||||| ||||||
Sbjct 1600 GCGAATCACGCGGATTCAACTGGATTAAGCACTGATAGCTTAGGCGATGCGGGGTATCCT 1659
Query 1594 CGG-GCAGCTGC-TTTGGGAGATGCTGTGTGCGGTATGGCAGTCGCGTGTATCACAAAAA 1651
|| |||||||| || ||| ||||||||||||||||||||||| || | |||||||||||
Sbjct 1660 -GGTGCAGCTGCGTTAGGG-GATGCTGTGTGCGGTATGGCAGTTGCATATATCACAAAAA 1717
Query 1652 GGGACTTCCTTTTCTGGTTTCGGTCTCATACTGAGAAAGAAATCAAATGGGGAGGGGCTA 1711
| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||| || |
Sbjct 1718 GAGACTTTCTTTTTTGGTTTCGATCTCACACTGCGAAAGAAATCAAATGGGGAGGCGCGA 1777
Query 1712 AGCACCATCCTGAGGACAAAGATGATGGTCAGCGGATGAATCCGCGTTCT-TCGTTCCAG 1770
|||| ||||| ||||| ||||||||||| || || ||| |||| |||| | || || |||
Sbjct 1778 AGCATCATCCCGAGGATAAAGATGATGGGCAACGAATGCATCCTCGTT-TGTCCTTTCAG 1836
Query 1771 ACTTTTCTCGAAGTTGTTAAGAGCC-GATGTCAGCCATGGGAAACTGCTGAAATGGACGC 1829
||||||| |||||||||||||||| || ||||||||||||||||||| |||||||| ||
Sbjct 1837 GCTTTTCTTGAAGTTGTTAAGAGCCGGA-GTCAGCCATGGGAAACTGCGGAAATGGATGC 1895
Query 1830 CATTCACTCGCTCCAGCTTATTCTAAGAGACTCTTTCAAAGAGTCTGAAGC-G--ATGGA 1886
|| |||||||||||||||||||| ||||||||||| ||||| ||||| || | ||| |
Sbjct 1896 GATACACTCGCTCCAGCTTATTCTGAGAGACTCTTTTAAAGAATCTGAGGCGGCTATGAA 1955
Query 1887 CTCTAAAGCTGCTGCAGCTGGGGCGGTTCAGCCACATGGAGATGATAT---GGTACAGCA 1943
||||||||||| || | ||| ||||||||| | |||| || ||||| || | ||||
Sbjct 1956 CTCTAAAGCTG-TG--GATGGTGCGGTTCAG-C-CATGTAG-GGATATGGCGGGAGAGCA 2009
Query 1944 AGGGA-TGCAGGAGATAGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACTGCGA 2002
|||| || | ||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2010 GGGGATTG-ATGAGTTAGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACCGCAA 2068
Query 2003 CGGTTCCTATATTTGCTGTGGACATAG-ACGGTTGCATCAATGGGTGGAACGCCAAGATC 2061
| ||||||||||| |||||||| | | || ||||||||||| |||||||| |||||
Sbjct 2069 CTGTTCCTATATTCGCTGTGGATGCCGGA-GGCTGCATCAATGGATGGAACGCTAAGATT 2127
Query 2062 GCAGAGCTGACCGGTCTTTCTGTTGAAGACGCTATGGGAAAGTCGCTGGTT-CGCGAAT- 2119
|||||| |||| ||||| || |||||||| |||||||||||||| |||||| | || |
Sbjct 2128 GCAGAGTTGACAGGTCTCTCAGTTGAAGAAGCTATGGGAAAGTCTCTGGTTTCT-GA-TC 2185
Query 2120 TGATATACAAAGAGTACAAAGAAACAGTTGATAGGCTTCTTTCTTGTGCTCTCAAAGGGG 2179
|||||||||||||| | ||||||| || ||| |||||||||| ||||| | | |||||
Sbjct 2186 TGATATACAAAGAGAATGAAGAAACTGTCAATAAGCTTCTTTCTCGTGCTTTGAGAGGGG 2245
Query 2180 ATGAAGGCAA-GAATGTGGAGGTCAAGCTGAAAACTTTTGGTTCCGAGCTACAAGGAAAA 2238
| || || || |||||||||||| |||||||||||||| | |||| || ||||| ||
Sbjct 2246 ACGA-GGAAAAGAATGTGGAGGTTAAGCTGAAAACTTTCAGCCCCGAACTTCAAGGGAAC 2304
Query 2239 GCAATGTTTGTGGTTGTCAACGCATGTTCAAGCAAGGACTACTTAAACAACATCGTTGGA 2298
|| | ||||||||||| || || ||||| ||||| |||||||| |||||||| || ||
Sbjct 2305 GCGGTTTTTGTGGTTGTGAATGCTTGTTCCAGCAAAGACTACTTGAACAACATTGTCGGC 2364
Query 2299 GTCTGCTTTGTTGGACAAGATGTAACTGGTCATAAAATTGTTATGGACAAGTTCATCAAC 2358
||||||||||||||||| || || |||||||| || || || ||||| ||||||||||||
Sbjct 2365 GTCTGCTTTGTTGGACAGGACGTTACTGGTCAGAAGATAGTAATGGATAAGTTCATCAAC 2424
Query 2359 ATACAAGGTGATTACAAGGCCATCATCCATAGCCCGAACCCTCTGATCCCTCCAATCTTT 2418
|||||||| ||||||||||| || |||||||||| ||||| || ||||| ||||| |||
Sbjct 2425 ATACAAGGAGATTACAAGGCTATTGTCCATAGCCCAAACCCGCTAATCCCGCCAATTTTT 2484
Query 2419 GCAGCGGATGAGAATACGTGCTGCCTTGAGTGGAACACTG-CAATGGAAAAGCTCACAGG 2477
|| || |||||||| ||||||||||| || ||||||| || | ||||||||||| || ||
Sbjct 2485 GCTGCTGATGAGAACACGTGCTGCCTGGAATGGAACA-TGGCGATGGAAAAGCTTACGGG 2543
Query 2478 CTGGCCTCGCAGCGAAGTGATTGG-AAAATTACTTGTTAGGGAAGTATTTGGGAGCTATT 2536
||| |||| || ||||||||||| ||||| ||||| ||||||| ||||| |||| ||
Sbjct 2544 TTGGTCTCGTAGTGAAGTGATTGGGAAAATG-CTTGTCGGGGAAGTGTTTGGTAGCTGTT 2602
Query 2537 GCA-GACTAAAGGGTCCTGATGCGTTAACTAAGTTCATGATCGTCTTGCATAACGCGATC 2595
||| | ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||
Sbjct 2603 GCATG-CTAAAGGGTCCTGATGCTTTAACCAAGTTCATGATTGTATTGCATAATGCGATT 2661
Query 2596 GGTGGCCAAGATACTGATAAATTCCCATTCCCGTTCTTTGATCGCAAAGGGGAA-TTCAT 2654
||||||||||| || ||||| ||||| || ||||||||||| ||||| ||| || || |
Sbjct 2662 GGTGGCCAAGAGACGGATAAGTTCCCTTTTCCGTTCTTTGACCGCAATGGG-AAGTTTGT 2720
Query 2655 TCAGGCTCTCCTGACTTTGAACAAACGGGTCAGCATCGATGGCAAAA-TCATTGGGGCTT 2713
||||||||| ||||| ||||| ||||||||| |||| || ||| | |||||||| |
Sbjct 2721 TCAGGCTCTATTGACTGCAAACAAGCGGGTCAGCCTCGACGG-AAAGGTTATTGGGGCAT 2779
Query 2714 TCTGTTTTTTGCAGATACCGAGTCCCGAGCTGCAGCAAGCTCTAGAAGTTCAGA-GGAGG 2772
||||||| |||||||| |||||||| ||||||||||||||| ||| ||| || | |||||
Sbjct 2780 TCTGTTTCTTGCAGATCCCGAGTCCTGAGCTGCAGCAAGCTTTAGCAGTCCA-ACGGAGG 2838
Query 2773 CAGGAGAGTGAATATTTCTC-AAGG-AGGAAAGAGTTGGCTTACATTT-TCCAAGTTATA 2829
||||| | || | |||| | |||| | |||||||| ||||| |||| || | || |||
Sbjct 2839 CAGGACACAGAGTGTTTCACGAAGGCA--AAAGAGTTAGCTTATATTTGTC-AGGTGATA 2895
Query 2830 AAGAATCCATTGAGTGG-ATTGCGTTTCACAAATTCATTGCTGGAAGACATGGATTTAAA 2888
|||||||| ||||| || || ||||||| |||| ||| || |||| | || || || ||
Sbjct 2896 AAGAATCCTTTGAGCGGTAT-GCGTTTCTCAAACTCACTGTTGGAGGCCACAGACTTGAA 2954
Query 2889 CGAGGATCAGAAGCAGCTT-CTTGAAACGAGTGTTTCATGTGAGAAGCAGATCTCAAAGA 2947
|||||| ||||||||| || |||||||| |||||||| || ||||| |||||||||| ||
Sbjct 2955 CGAGGACCAGAAGCAG-TTACTTGAAACAAGTGTTTCTTGCGAGAAACAGATCTCAAGGA 3013
Query 2948 TTGTAGGAGACATGGA-CGTCAAAAGCATAGATGACGGTTCATTTCTGCTAGAGAGAACA 3006
|||| || |||||||| | | ||| |||| || |||||||| ||| |||| |||| |
Sbjct 3014 TTGTCGGTGACATGGATCTTGAAA-GCATTGAAGACGGTTCGTTTGAGCTAAAGAGGGCG 3072
Query 3007 GAGTTCTTCATTGGCAA-TGTCACAAATGC-AGTGGTAAGCCAAGTC-ATGTTGGTGGTG 3063
||||| ||| | || || ||||| ||| || | || ||||||||| | ||||| | |
Sbjct 3073 GAGTTTTTCCTCGG-AAGTGTCATAAACGCGATTG-TAAGCCAAG-CGATGTTCTTATTA 3129
Query 3064 AGAGAGAGAAATCTCCAGCTGATCCGTAACATTCCC-ACGGAGGTCAAATCCATGGCTGT 3122
|| || ||| ||| |||||||||||| |||||||| | | || ||||||| || | |||
Sbjct 3130 AGGGACAGAGGTCTTCAGCTGATCCGTGACATTCCCGAAG-AGATCAAATCAATAGTTGT 3188
Query 3123 CTACGGTGACCAGATAAGGCTCCAACAGGTTCTCGCAGAATTTCTGCTAAGTATTGTCCG 3182
| || |||||||||||| | |||||| | || || || |||||||| | ||| | ||
Sbjct 3189 TTTTGGAGACCAGATAAGGATTCAACAGCTCCTGGCTGAGTTTCTGCTGACTATAATTCG 3248
Query 3183 TTATGCACCCATGG-AAG-GCTCGGTAGAGCTCCATCTATGCCC-GACTCTGAACCAAAT 3239
||||| || || ||| | | ||| ||| ||||| || ||| | || ||| ||
Sbjct 3249 GTATGCTCC-ATCTCAAGAG-TGGGTGGAGATCCATTTAAGCCAAGTTTCAAAAC-AAGC 3305
Query 3240 GGCTGACGGATTCTCCGCTGTACGTTTGGAGTTCAGAATGGCGTGTGCAGGGGAAGGTGT 3299
|||||| |||||| ||||| | || || ||||||||||||||| |||| |||||| |
Sbjct 3306 GGCTGATGGATTCACCGCTATCCGCACAGAATTCAGAATGGCGTGTCCAGGTGAAGGTCT 3365
Query 3300 GCCGCCAGAGAAAGTGCAAGACATGTTCCATAGTAGCCGATGGACAAGTCCAGAAGGATT 3359
||| |||||| ||| | ||||||||||||||||||| | |||||||| || ||||||||
Sbjct 3366 GCCTCCAGAGCTAGTCCGAGACATGTTCCATAGTAGCAGGTGGACAAGCCCTGAAGGATT 3425
Query 3360 AGGACTAAGCGTTTG-CAGAAAGATTTTGAAGCTGATGAACGGAGGGGTTCAGTACATAA 3418
||| |||||||| || | |||||||| | ||||| |||||||| | |||||| |||||
Sbjct 3426 AGGTCTAAGCGTATGTC-GAAAGATTCTAAAGCTCATGAACGGTGAGGTTCAATACATCC 3484
Query 3419 GAGAATTC-GAACGCTCTTATTTCCTAATCGTTATCGAACTCCCGGTTCCTC 3469
|||||| | ||||| ||||||||||| ||| || ||||||| || || ||||
Sbjct 3485 GAGAAT-CAGAACGGTCTTATTTCCTCATCATTCTCGAACTACCTGTACCTC 3535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131983663164
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5