BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16420.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493242 jgi|Araly1|493242|fgenesh2_kg.7__2675__AT4G16420.1 2702 0.0
> Ahg493242 jgi|Araly1|493242|fgenesh2_kg.7__2675__AT4G16420.1
Length=1846
Score = 2702 bits (1463), Expect = 0.0
Identities = 1592/1655 (96%), Gaps = 6/1655 (0%)
Strand=Plus/Plus
Query 306 GCATCAATGGGTCGCTCTCGAGGGAACTTCCAAAATTTCGAAGACCCTACTCAGAGAACG 365
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 197 GCATCAATGGGTCGCTCTCGAGGGAACTTCCAAAATTTCGAAGACCCTACACAGAGAACC 256
Query 366 AGGAAAAAGAAAAATGCGGCTAATGTGGAGAACTTTGAGTCTACTTCTTTGGTACCAGGT 425
||||||||||||||||| ||||||||||| |||||||||||||| ||| |||| ||||||
Sbjct 257 AGGAAAAAGAAAAATGCAGCTAATGTGGAAAACTTTGAGTCTACATCTATGGTTCCAGGT 316
Query 426 GCTGAGGGAGGAGGGAAGTATAACTGCGATTATTGCCAGAAAGACATTACTGGAAAAATT 485
|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 317 ACTGAGGGAGGAGGGAAATATAACTGCGATTATTGCCAGAAAGACATTACCGGCAAAATT 376
Query 486 AGGATAAAGTGTGCTGTCTGTCCAGATTTTGATCTCTGTATAGAATGTATGTCTGTTGGA 545
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 377 AGGATAAAGTGTGCTGTCTGTCCGGATTTTGATCTCTGTGTAGAATGTATGTCTGTTGGA 436
Query 546 GCAGAGATCACTCCTCACAAATGTGATCACCCATACCGAGTTATGGGAAATCTAACTTTC 605
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GCAGAGATTACTCCTCACAAATGTGATCACCCATACCGAGTTATGGGAAATCTAACTTTC 496
Query 606 CCGCTTATTTGTCCTGACTGGAGTGCGGATGATGAAATGCTTCTCCTGGAGGGACTTGAA 665
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CCTCTTATTTGTCCGGACTGGAGTGCGGATGATGAAATGCTTCTCCTGGAGGGACTTGAA 556
Query 666 ATTTATGGCTTGGGAAACTGGGCAGAGGTTGCGGAGCACGTGGGAACGAAGAGTAAAGAA 725
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 557 ATTTATGGCTTGGGGAACTGGGCAGAGGTCGCGGAGCATGTGGGAACGAAGAGTAAAGAA 616
Query 726 CAGTGTCTTGAGCACTACAGAAACATCTATTTGAACTCACCATTTTTCCCACTTCCGGAT 785
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 617 CAGTGTCTTGAGCACTACAGAAACATTTATTTGAACTCACCATTTTTCCCACTTCCGGAT 676
Query 786 ATGTCACATGTAGCAGGGAAGAACAGAAAAGAACTTCAAGCCATGGCTAAAGGACGCATT 845
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 677 ATGTCACATGTAGCAGGGAAGAACAGAAAAGAACTTCAAGCCATGGCAAAAGGACGCATT 736
Query 846 GATGACAAGAAAGCAGAGCAGAACATGAAAGAAGAGTACCCGTTCTCTCCTCCTAAAGTC 905
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 737 GATGACAAGAAAGCAGAGCAGAACATGAAAGAAGAGTACCCATTCTCTCCTCCTAAAGTC 796
Query 906 AAAGTTGAAGACACACAAAAAGAGTCTTTTGTAGACAGAAGTTTTGGAGGGAAGAAACCT 965
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 797 AAAGTTGAAGACACACAAAAAGAGTCTTTTATAGACAGGAGTTTTGGAGGGAAGAAACCT 856
Query 966 GTTTCCACCTCGGTAAACAACTCTTTGGTTGAGCTGAGTAATTACAACCAGAAAAGAGAA 1025
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 857 GTCGCCACCTCGGTAAACAACTCTTTGGTTGAATTGAGTAATTACAACCAGAAAAGAGAA 916
Query 1026 GAGTTTGACCCTGAATATGACAATGATGCTGAGCAACTCTTGGCGGAGATGGAGTTCAAA 1085
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 917 GAGTTTGACCCTGAATATGACAATGACGCTGAGCAACTCTTGGCTGAGATGGAGTTCAAA 976
Query 1086 GAGAACGATACTCCTGAAGAACATGAACTGAAGCTGCGTGTGTTGCGTATCTATTCAAAA 1145
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 977 GAGAACGATACTCCTGAGGAACATGAGCTGAAGCTGCGTGTGTTGCGTATCTATTCTAAA 1036
Query 1146 AGGCTTGATGAGAGGAAACGTAGAAAAGAATTCATAATAGAAAGAAACCTGTTGTACCCA 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGGCTTGATGAGAGGAAACGTAGAAAAGAATTCATAATAGAAAGAAACCTGTTGTACCCA 1096
Query 1206 AATCCCTTTGAGAAGGACCTGTCTCAGGAGGAGAAAGTACAATGCCGACGTTTGGACGTT 1265
|||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||
Sbjct 1097 AATCCCTTTGAGAAGGACCTGTCTCAGGAGGAGAGAGTGCAGTGTCGACGTTTGGACGTT 1156
Query 1266 TTTATGCGTTTTCATTCAAAAGAGGAGCACGACGAGCTACTCCGTAATGTTGTAAGCGAG 1325
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1157 TTTATGCGTTTTCATTCAAAAGAGGAGCACGATGAGCTACTCCGTAATGTTGTAAGCGAG 1216
Query 1326 TACCGCATGGTGAAACGGCTCAAAGATCTCAAGGAAGCTCAAGTGGCAGGGTGTCGTTCA 1385
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1217 TACCGCATGGTGAAACGGCTCAAAGATCTCAAGGAAGCTCAAGTGGCAGGTTGTCGTTCG 1276
Query 1386 ACGGCTGAAGCagagaggtatctgggaaggaagaggaagagagaaaacgaagaagggatg 1445
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1277 ACGGCTGAAGCAGAGAGGTATCTGGGGAGGAAGAGGAAGAGAGAAAACGAAGAAGGGATG 1336
Query 1446 aacagagggaaagagagCGGTCAATTTGGTCAAATTGCAGGGGAGATGGGCTCTAGACCA 1505
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1337 AACAGAGGGAAAGAGAGCGGTCAATTTGGTCAAATAGCAGGGGAGATGGGCTCTAGACCT 1396
Query 1506 CCTGTGCAAGCTTCTTCAAGCTATGTGAATGATTTGGACTTGATTGGGTTCACGGAGTCG 1565
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1397 CCTGTGCAAGCATCTTCAAGCTATGTGAATGATTTGGACCTGATTGGATTCACGGAGTCG 1456
Query 1566 CAACTGCTGTCTGAATCCGAGAAGCGTCTCTGCAGCGAGGTCAAGTTGGTTCCACCGGTT 1625
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 CAACTGCTGTCCGAATCCGAGAAGCGTCTCTGCAGCGAGGTCAAGTTGGTTCCACCGGTT 1516
Query 1626 TATCTACAGATGCAACAAGTGATGTCACATGAGATATTCAAAGGGAATGTAACGAAGAAG 1685
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1517 TATCTACAGATGCAACAAGTGATGTCACATGAGATATTCAAAGGGAATGTGACGAAGAAG 1576
Query 1686 TCGGATGCATATAGCCTTTTCAAGATTGATCCAACCAAAGTGGATCGAGTTTATGATATG 1745
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1577 TCGGATGCATATAGCCTGTTCAAGATCGATCCAACCAAAGTGGATCGAGTTTATGATATG 1636
Query 1746 CTTGTGAAGAAGGGTATTGCTCAACTTTAAGGCTTGTGTAGTGTTGTATCatatatatat 1805
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1637 CTTGTGAAGAAGGGTATTGCTCAAGTTTAAGGCTTATGTAGTGTTGTATCATATATATAT 1696
Query 1806 atGTGTGAGCTCTAATGAGTTATTTGTTGACATTCCCTTGTTTATTACACCTTGTCAAAA 1865
||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1697 --GTG--AGCTCTATTGAGTTATTTGTTGACATTCCCTTGTTTATTACACCTTGTTAAAA 1752
Query 1866 TTAGTTTGTAATAGAAAAACGATTAAGTTATCCACAGATTGTGAAAAGAGATAAGGTGAA 1925
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1753 TTAGTTTGTAATAGAAAAACGATTAAGTTATCCACAGATTGTGAAAAGAGATAAGGTGGA 1812
Query 1926 TCAGAGCCACACAATCTAAAC-CAAATGTTTTAGT 1959
| ||||||||||||||||||| ||| ||||||||
Sbjct 1813 TGAGAGCCACACAATCTAAACTCAAC-GTTTTAGT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5