BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16442.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946620 jgi|Araly1|946620|scaffold_702849.1 907 0.0
> Ahg946620 jgi|Araly1|946620|scaffold_702849.1
Length=591
Score = 907 bits (491), Expect = 0.0
Identities = 550/579 (95%), Gaps = 1/579 (0%)
Strand=Plus/Plus
Query 110 CAGAAGCAAGATGAAGTTAATAGATCGAAGAATGAGGTTAACGGAGCTGCTCTTACGGTG 169
||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct 13 CAGCAGCAAGATGAAGCTAATTGATCGAAGACTGAAGTTAACGGAGCTGCTCTTACGATG 72
Query 170 CTCCATCAGTGTCTTCGCTCTCCTCGCGCTTATTCTAGTTGTGACAGACACTGAGGTCAA 229
||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 73 CTCCATCAGCGTCTTCGCTCTTCTCGCGCTTATTCTGGTTGTTACAGACACTGAGGTCAA 132
Query 230 GCTTATCTTCACTATCAAGAAGACGGCCAAGTACACGGACATGAAGGCGGTTGTGTTCTT 289
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 133 GCTAATCTTCACTATCAAGAAGACGGCCAAGTACACCGACATGAAGGCGGTTGTGTTCTT 192
Query 290 GGTGGTGGCTAATGGGATAGCTGCGGTTTATTCTTTGTTGCAATCAGTTCGTTGCGTGGT 349
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 193 GGTGGTGGCTAATGGGATAGCTGCGGTTTATTCTTTGTTACAATCAGTTCGTTGCGTGGT 252
Query 350 GGGTACGATGAAAGGAAAGGTTTTGTTTAGTAAGCCTCTTGCTTGGGCCTTTTTCTCTGG 409
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GGGTACGATGAAAGGAAGGGTTTTGTTTAGTAAGCCTCTTGCTTGGGCCTTTTTCTCTGG 312
Query 410 TGATCAGGCGATGGCGTACTTGAATGTGGCAGCCATTGCAGCAACAGCAGAGTCTGGTGT 469
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 313 TGATCAGGCGATGGCGTACTTGAATGTGGCGGCCATTGCAGCAACAGCAGAGTCTGGTGT 372
Query 470 GATTGCTAGGGAAGGAGAGGAAGATTTGCAATGGATGAGAGTGTGTACTATGTATGGAAA 529
|||||| || ||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 373 GATTGCAAGAGAAGGAGAGGAAGATTTGCAATGGATGAGAGTGTGCAATATGTATGGCAA 432
Query 530 GTTCTGCAACCAAATGGCTATAGGAGTCTCTAGCGCCTTGTTAGCCTCCATTGCTATGGT 589
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 433 GTTCTGCAACCAAATGGCTATAGGTGTCTCCAGCGCCTTGTTAGCCTCCATTGCTATGGT 492
Query 590 TTTCGTCTCCTGCATTTCTGCTTTTAGTCTCTTCCGCTTGTACGGTGCCACCAAAGACCG 649
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 493 TTTCGTCTCCTGCATTTCTGCTTTTAGTCTCTTCCGCTTGTATGGTGCCACCAAAGACCG 552
Query 650 CAGAACCACGCCGTGGTGAAGTGAATGCGGCTTTGTCTT 688
||||||||| || ||||||||| |||| |||||||||
Sbjct 553 CAGAACCACACCTTGGTGAAGTTCTTGCG-CTTTGTCTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5