BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16500.1
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493227 jgi|Araly1|493227|fgenesh2_kg.7__2660__AT4G16500.1 634 0.0
> Ahg493227 jgi|Araly1|493227|fgenesh2_kg.7__2660__AT4G16500.1
Length=571
Score = 634 bits (343), Expect = 0.0
Identities = 453/502 (90%), Gaps = 24/502 (5%)
Strand=Plus/Plus
Query 116 AAAAAAGGTTAAGG--AAACGAAAATATGATGATGAAGTCGTTGATCTGTCTCTCTCTCA 173
|||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 79 AAAAAAGGTTAAGGAAAAAC-AAAA-ATGATGATGAAGTCGTTGATCTATCTCTCTCTCA 136
Query 174 TCCTCCTCCCACTTGTCTCCGTCGTGGAAGGTCTCGGTGGTGGTGGTGGTCTTGGTAGCC 233
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 137 TCCTCCTCCCACTTGTCTCCGTCGTGGAAGGTCTC---GGTGGTGGTGGTCTCGGTAGCA 193
Query 234 GGAAGCCGATCAAGAATGTATCTGATCCGGATGTTGTTGCGGTCGCCAAGTATGCCATCG 293
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 194 GGAAGCCGATCAAGAATGTATCGGATCCGGACGTTGTTGCGATCGCCAAGTATGCCATCG 253
Query 294 AGGAACATAACAAGGAGTCGAAGGAGAAGTTGGTTTTCGTCAAGGTTGTGGAGGGAACGA 353
| || |||||||| | ||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 254 ATGAGCATAACAAACAATCGAAGGAGCATTTGGTTTTCGTCAAGGTTGTCGAGGGAACGA 313
Query 354 CGCAAGTGGTCTCCGGTACAAAGTACGATCTGAAAATTGCGGCGAAGGATGGTGGTGGTA 413
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CACAAGTGGTCTCCGGTACAAAGTACGATCTGAAAATTGCGGCGAAGGATGGTGGTGGTA 373
Query 414 AGATCAAGAACTATGAGGCTGTTGTTGTTGAAAAGCTTTGGCTTCATTCTAAGAGCCTTG 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 374 AGATCAAGAACTATGAGGCTGTTGTTGTTGAAAAGCTTTGGCTTCATTCTAAGACCCTTG 433
Query 474 AGTCTTTCAAGGCGTTATAGATCTTTAATTGGATTTTTGT-AGATCGATCTCTCTCT--C 530
|||| ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
Sbjct 434 AGTCCTTCGAGGCGGCATAGATCTTT----GGATTTTTGTTAGATCGATCTCTCTCTGAC 489
Query 531 ------GGGTATATCTAT--CTAGCTTTTGATGATTTGAGACTCTGA--CGTTTGTGTTG 580
|||||||||||| ||||||||||||||||||||| | ||| | ||| |||||
Sbjct 490 TCTCTCGGGTATATCTATATCTAGCTTTTGATGATTTGAGATTTTGAGACATTTATGTTG 549
Query 581 TTGTTGGTAATATCTGTGGAAT 602
||||||||||||| ||||||||
Sbjct 550 TTGTTGGTAATATTTGTGGAAT 571
Score = 132 bits (71), Expect = 4e-30
Identities = 80/84 (95%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 4 ATTGAGATCTCCGTAAATTTCTGGAACTATCA-GCCCACATTCCAAAGCAAAACCAAATC 62
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1 ATTGAGATCTCCGTAAATTTCTGGAACTAT-ATGCCCACATTCCAAGGCAAAACCAAATC 59
Query 63 TACAAGTCTTGTCTATATAATAAA 86
|||||||||||||||||||| |||
Sbjct 60 TACAAGTCTTGTCTATATAAAAAA 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23254979370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5