BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16563.1 Length=1867 Score E Sequences producing significant alignments: (Bits) Value Ahg946589 jgi|Araly1|946589|scaffold_702818.1 2466 0.0 > Ahg946589 jgi|Araly1|946589|scaffold_702818.1 Length=1542 Score = 2466 bits (1335), Expect = 0.0 Identities = 1482/1552 (95%), Gaps = 14/1552 (1%) Strand=Plus/Plus Query 70 CTCCACTGTTTTATTATCCACCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 129 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCCACTGTTTTATCATCCGCCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 60 Query 130 TCTCCAA-TACTATTTCCACTTCTCTGTGTCATCATTATCAACAcctcttctcct-ccat 187 ||| ||| |||| |||| |||||||||| | |||| ||||||||||||||| || || | Sbjct 61 TCT-CAATTACTGTTTCTACTTCTCTGT-T--TCATCATCAACACCTCTTCTACTACC-T 115 Query 188 ctctcccactctctctcaacctcaaaacactcttcatctcctctccaccttctcaaatca 247 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 CTCTCTCACTCTCTCTCAACCTCAAAACACTCTTCATCTCCTCTCCACCTTCTCAAATCA 175 Query 248 tcctcctccCGTTCCTCCGCCCGCTTCCGCCGCCACCACCacaaacaacaacaacaacaa 307 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 176 TCCTCCTCCCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAAC-AC--CAACAACAA 232 Query 308 cTTTCACTCCCTATCTCCTCCGGCAGCGATTATCTCATCTCCCTCTCCGTCGGCTCCTCC 367 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 233 CTTTCACTCCCTATCTCCTCCGGCAGCGATTACCTCATCTCCCTCTCCGTCGGCTCCTCC 292 Query 368 TCCTCAGCCGTCTCCTTGTACTTGGACACCGGAAGCGACCTCGTTTGGTTCCCTTGCCGT 427 ||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 293 TCCTCAGCCGTCTCCCTCTACTTAGACACCGGAAGCGACCTCGTCTGGTTCCCTTGCCGT 352 Query 428 CCTTTCACTTGCATCCTCTGTGAATCCAAACCActccctccttctcctccttcatctctc 487 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 353 CCTTTCACTTGCATCCTCTGTGAATCCAAACCACTCCCTCCTTCTCCTCCACCCTCTCTC 412 Query 488 tcctcctccgccaccaccgtctcctgctcctccccttcttgctccgccgctcactctTCC 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 TCCTCCTCCGCCACCACCGTCTCCTGCTCCTCCCCTTCTTGCTCCGCCGCTCACTCTTCC 472 Query 548 CTTCCCTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTTCATCGAAACCGGA 607 ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 473 CTTCCTTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTACATCGAAACCGGT 532 Query 608 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGctct 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGCTCT 592 Query 668 ctcgtcgcaaaactctactccgactcactctctctcccttccgtctccgtctctAACTTC 727 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 593 CTCGTCGCAAAACTCTTCTCCGACTCACTCTCTCTCCCTTCCGTCTCCGTCGCTAACTTC 652 Query 728 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 712 Query 788 GGACGTCTCTCTCTTCCCGCTCAGCTCGCTGTTCACTCTCCTCATCTCGGTAATAGCTTC 847 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 713 GGACGTCTCTCTCTTCCCGCTCAGCTCTCTGTTCACTCTCCTCATCTCGGTAACAGCTTC 772 Query 848 TCTTATTGTCTCGTCTCTCACTCTTTTGACTCGGACCGAGTCCGCCGTCCGAGTCCGCTC 907 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 773 TCTTATTGTCTCGTCTCTCACTCGTTTGACTCAGACCGAGTCCGCCGTCCGAGTCCACTC 832 Query 908 ATCCTCGGTCGCTTCGTCGATAAAAAAGAGAAACGTGTCGGAACCACCGATGATCATGAT 967 || ||||| || |||||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 833 ATACTCGGCCGTTTCGTCGATAAAAAAGAGAAACGTGTTGCAACCACCGATGATGATGAT 892 Query 968 GACGGTGATGATGA-GAAGAAGAAGAAAAATGAGTTCGTCTTCACAGAGATGCTTGAAAA 1026 || |||||||| || |||||||||||| ||||| ||||||||||| |||||||||||||| Sbjct 893 GATGGTGATGA-GACGAAGAAGAAGAAGAATGAATTCGTCTTCACCGAGATGCTTGAAAA 951 Query 1027 CCCAAAGCATCCCTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1086 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 CCCAAAGCATCCTTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1011 Query 1087 TATTCCAGCTCCGGCGATGCTCAGAAGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1146 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1012 TATTCCTGCTCCGGCGATGCTCAGACGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1071 Query 1147 TGACTCAGGGACAACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1206 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 TGACTCAGGGACGACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1131 Query 1207 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1191 Query 1267 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1192 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1251 Query 1327 TGCCGGGAACAGATCCAGTGTGACGCTCCCCAGGAGAAATTATTTTTACGAATTTATGGA 1386 ||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1252 TGCCGGGAATGGATCCAGTGTTACGCTCCCTAGGAGAAATTATTTTTATGAATTTATGGA 1311 Query 1387 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAATTGGATGTTTGATGTTGATGAACGGTGG 1446 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1312 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAGTTGGATGTTTGATGTTGATGAACGGTGG 1371 Query 1447 AGATGAATCAGAACTTCGAGGTGGTACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1506 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1372 AGATGAATCGGAGCTTCGAGGTGGGACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1431 Query 1507 GTTTGAGGTGGTTTATGATCTGTTGAACAGAAGAGTTGGGTTT-GCTAAGAGGAAGTGCG 1565 |||||||||||| |||||||||||||||||||||||||| ||| || |||||||| |||| Sbjct 1432 GTTTGAGGTGGTCTATGATCTGTTGAACAGAAGAGTTGG-TTTCGCAAAGAGGAAATGCG 1490 Query 1566 CATCTTTATGGGATTCGCTTAAATAAGCCTAACATGCGCTGAAGCCAATAAA 1617 |||||||||||||| ||||||| | | |||||||||||||||||||||||| Sbjct 1491 CATCTTTATGGGATACGCTTAACCAGGGCTAACATGCGCTGAAGCCAATAAA 1542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70124141045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5