BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16590.1
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946577 jgi|Araly1|946577|scaffold_702806.1 2566 0.0
Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033 806 0.0
Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847 374 2e-102
> Ahg946577 jgi|Araly1|946577|scaffold_702806.1
Length=1702
Score = 2566 bits (1389), Expect = 0.0
Identities = 1607/1711 (94%), Gaps = 19/1711 (1%)
Strand=Plus/Plus
Query 42 GCTTCAGTTTTAGAGCAACAATGTCTCTATTTCTGAAGCCCTTCCTCTTCCTATACGACA 101
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTCAGTTCTAGAGCAACAATGTCTCTATTTCTGAAGCCCTTCCTCTTCCTATACGACA 60
Query 102 CCACTCTTAGTCTTCTCTTACTTCTGTTCAATGGATGGAGTCTTGAGGATACAGCAGCAG 161
||||||||||||| |||||||||||||| |||||| |||||||||| ||| | ||||||
Sbjct 61 CCACTCTTAGTCTCCTCTTACTTCTGTTTAATGGAGGGAGTCTTGAAGATGCTGCAGCAA 120
Query 162 CCCAAAAGAGGCGTGAAGCAGACAAAAATGCTGCAGAAACTGAATGGATCCAACTCCAAT 221
| || |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CACAGGAGAGGCTTGAAGCAGACAAAAATGCTGCAGAGTCTGAATGGATCCAACTCCAAT 180
Query 222 ACTTGTGGACCAAAACAAGGAGTGTTGTACTACTTCCCGTTTTCAAGGGTTTGGTGGTTA 281
| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 181 ATTTGTGGACCAAAACGAGGAGTGTTGTATTACTTCCTGTTTTCAAGGGTTTGGTGGTTA 240
Query 282 TGTGTTTGGTTCTATCCATTATAGTGTTCTTCGAGAGTTTTTACATGAACTTTGTGATAC 341
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTGTTTGGTTCTATCTATTATAGTGTTCTTCGAGAGTTTTTACATGAACTTTGTGATAC 300
Query 342 TCTTCGTCAAGTTATTTAAACGTAAACCCCATAAAGTGTACAAATGGGAGGCCATGCAAG 401
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTCGTCAAGTTATTTAGACGTAAACCCCATAAAGTGTACAAATGGGAGGCCATGCAAG 360
Query 402 AAGATGTTGAGGTTGGACCCGATAACTACCCAATGGTTCTTATCCAAATACCAATGTACA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGATGTTGAGGTTGGACCCGATAACTACCCAATGGTTCTTATCCAAATACCAATGTACA 420
Query 462 ATGAAAAAGAGGT-ATACGCA-TATATATA-CTACCTTTAT-TAATTACACTCT-TTTAT 516
||||||||||||| | | | ||| |||| | | ||| || || ||| |
Sbjct 421 ATGAAAAAGAGGTCTTTC-AATTATCTATAGC-GGCAATATGTAGTT-TGGTCTGGCCAC 477
Query 517 TATATGGTTGATTTAGTAGTTCAAGTTGTAGATGATTCTACGGATCCGGCCGTAAGGGAA 576
| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CA-A--GCCG-CCTAGTAGTTCAAGTTGTAGATGATTCTACGGATCCGGCCGTAAGGGAC 533
Query 577 GGTGTGGACGTAGAGATTGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGG 636
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGTGTGGACATAGAGATTGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGG 593
Query 637 AGAGATAACAGGAACGGCTACAAAGCCGGAGCTATGAAAGAAGCTCTTACGCAGAGCTAC 696
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 594 AGAGATAATAGGAACGGCTATAAAGCTGGAGCTATGAAAGAAGCTCTTACGCATAGCTAC 653
Query 697 GTCAAGCAATGCGACTTCGTAGCAGTCTTCGATGCTGATTTCCAACCCGAGCCCGATTAT 756
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 654 GTCAAGCAATGCGATTTCGTAGCAGTCTTCGATGCCGATTTCCAACCAGAGCCCGATTAC 713
Query 757 CTCATCCGCGCTGT-CCCTTTCCTTGTCCACAACCCTGACGTTGCTCTAGTTCAAGCCCG 815
||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 714 CTCATCCGCGCCGTCCCCTTT-CTTGTCCACAACCCTGACGTTGCTCTCGTTCAAGCCCG 772
Query 816 ATGGATATTTGTTAACGCGAACAAATGCTTGATGACGAGGATGCAAGAGATGTCTCTCAA 875
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 773 ATGGATATTTGTTAACGCGAACAAATGTTTGATGACGAGGATGCAAGAGATGTCTCTCAA 832
Query 876 CTATCATTTCAAAGTGGAACAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGGTTTAA 935
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 CTATCATTTCAAGGTGGAACAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGATTTAA 892
Query 936 TGGAACCGCGGGTGTATGGAGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAAG 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGGAACCGCGGGTGTATGGAGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAAG 952
Query 996 GACCACAGTAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCATGGCTGGAAATTTGT 1055
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 953 GACCACAGTAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCACGGCTGGAAATTTGT 1012
Query 1056 CTACCTTAACGACCTCACGGTGAGAAACGAGCTTCCAAGCAAATTTAAGGCCTACAGATT 1115
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1013 CTACCTTAACGACCTCACGGTGAGAAACGAGCTTCCAAGCAAATTCAAGGCCTACAGATT 1072
Query 1116 CCAGCAACATAGGTGGTCCTGTGGACCGGCGAATCTATTTAGAAAAATGACGATGGAGAT 1175
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1073 CCAGCAACATAGGTGGTCCTGTGGCCCGGCGAATCTATTTAGAAAAATGACGATGGAGAT 1132
Query 1176 CATTT-TCAATAAGAGAGTATCAATTTGGAAGAAGTTTTATGTGATCTACAGCTTTTTCT 1234
|||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1133 CATTCGT-AATAAGAGAGTATCAATATGGAAGAAGTTCTATGTGATCTACAGCTTTTTCT 1191
Query 1235 TCGTAAGGAAAGTGGCGGTACACTTCTTGACATTCTTCTTCTACTGTATAATTGTGCCAA 1294
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TCGTAAGAAAAGTGGCAGTACACTTCTTGACATTCTTCTTCTACTGTATAATTGTGCCAA 1251
Query 1295 CAAGTGTCTTCTTCCCTGAAATCCACATCCCATCTTGGTCTACCATTTACGTTCCCTCTT 1354
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1252 CAAGTGTCTTCTTCCCTGAAATCTACATCCCATCTTGGTCTACCATTTACATTCCCTCTT 1311
Query 1355 TGATCAGTATCTTCCACACCCTGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGG 1414
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TGATCACTATCTTCCACACCATGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGA 1371
Query 1415 TCTTGTTCGAGAATGTAATGGCTATGCATCGAACCAAAGGTACGTGCATTGGCCTACTTG 1474
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1372 TCTTGTTCGAGAATGTAATGGCTATGCATCGAACCAAAGGAACGTGCATTGGCCTACTTG 1431
Query 1475 AAGGAGGAAGAGTAAACGAATGGGTTGTGACCGAAAAACTAGGAGATGCTTTGAAGAGTA 1534
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 1432 AAGGAGGAAGAGTGAACGAATGGGTTGTGACCGAAAAATTAGGAGATGCTTTAAAGAATA 1491
Query 1535 AGCTACTCTCTCGGGTAGTCCAAAGAAAATCTTGTTATCAAAGAGTGAATTCCAAGGAAG 1594
|||||||||| | ||| |||||||| |||||||||||| | ||||||||||| |||||||
Sbjct 1492 AGCTACTCTCGCAGGTCGTCCAAAGGAAATCTTGTTATGAGAGAGTGAATTCAAAGGAAG 1551
Query 1595 TGATGGTGGGGGTATACATATTAGGATGTGCACTCTATGGCCTGATCTATGGGCACACAT 1654
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1552 TGATGGTGGGGGTGTACATATTAGGATGTGCACTCTATGGCCTGATCTATGGCCACACAT 1611
Query 1655 GGTTACATTTCTATCTTTTTCTTCAGGCCACAGCCTTTTTCGTCTCCGGTTTTGGTTTTG 1714
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1612 GGTTACATTTCTATCTTTTTCTTCAGGCCACGGCCTTTTTCGTCTCCGGTTTTGGTTTTG 1671
Query 1715 TCGGAACCTAA---GAACCTTCCCGGCCCAT 1742
| ||||||||| |||||||||||||||||
Sbjct 1672 TTGGAACCTAATAAGAACCTTCCCGGCCCAT 1702
> Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033
Length=1659
Score = 806 bits (436), Expect = 0.0
Identities = 1168/1513 (77%), Gaps = 83/1513 (5%)
Strand=Plus/Plus
Query 255 TTCCCGTT-TTCAAGGGTTTGGTGGTTATGTGTTTGGTTCTATCCAT-TATAGTGTTCTT 312
||||| || |||||| ||||||||| | | |||||| | | ||| | | |||| ||| |
Sbjct 188 TTCCC-TTATTCAAGTGTTTGGTGGCTCTTTGTTTGATGATCTCCCTCT-TAGTTTTCAT 245
Query 313 CGAGAGTTTTTACATGAACTTTGTGA-TACTCT-TCGTCAAGTTATTTAAACGTAAACCC 370
||| || | ||||||||| |||| | |||||| | |||||||| ||||| || |||||
Sbjct 246 AGAGGGTATATACATGAACCTTGT-AGTACTCTAT-GTCAAGTTGTTTAACCGAAAACCG 303
Query 371 CATAAAGTGTACAAATGGGAGGCC-ATGCAAGAAGATGTTGAGGTTGGACCCGATAA-CT 428
| ||| | ||||||||||| ||| |||| || || ||||| | |||| || || ||
Sbjct 304 GAAAAAATCTACAAATGGGA-GCCGATGCCGGAGGACATTGAGCTCGGACATGA-AACCT 361
Query 429 ACCCAATGGTTCTTATCCAAATACCAATGTACAATGAAAAAGAGGT-ATACGCA-TATAT 486
|||| ||||| ||| | ||||| ||||||||||| ||||||||||| | | | ||| |
Sbjct 362 ACCCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGTCCTTC-AATTATCT 420
Query 487 ATA-CTACCTTTAT-TA-ATTACACTCTTTTATTATATGG-TTGATTTAGTAGTTCAAGT 542
||| | || ||| || | || | || | || ||| | | || | ||||||||
Sbjct 421 ATAGGT-GCTGTATGTAGACTA-A-TC--TGGCCAT-TGGATCG-CCTAATTGTTCAAGT 473
Query 543 TGTAGATGATTCTACGGATCCGGCCGT-AAGGGAAGGT-GTGGACGTAGAGAT-TGCAAA 599
| |||||||||| || |||| || | ||||| | | ||| || |||| | ||||||
Sbjct 474 TCTAGATGATTCCACTGATCAAACCATGAAGGG--GCTGGTGAACACAGAG-TGTGCAAA 530
Query 600 ATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGGAGAGATAACAGGAACGGCTACAA 659
|||| ||||| ||||| |||| |||| |||||| |||||||| ||||| || ||||| ||
Sbjct 531 ATGGGAAAGCAAAGGCGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAA 590
Query 660 AGCCGGAGCTATGAAAGAA-GCTCTTACGCAGAGCTACGTCAAGCAATGCGACT-TCGTA 717
|||||||||| | ||| || || | | ||| | ||||| |||| |||| ||| | ||
Sbjct 591 AGCCGGAGCTCTTAAACAAGGC-ATGAAGCACAATTACGTGAAGCTATGCAACTAT-GTT 648
Query 718 G-CAGTCTTCGATGCTGA-TTTCCAACCCGAGCCCGATTATCT-CATCCGCGCTGTCCCT 774
| || |||| || || || ||| ||||| ||||| ||||| || || ||| |||||||
Sbjct 649 GTCA-TCTTTGACGCAGACTTT-CAACCGGAGCCTGATTACCTCCA-ACGCTCTGTCCCA 705
Query 775 TTCCTTGTCCACAACCCTGACGTTGCTCTAGTTCAAGCCCGATGGATATTTGTTAACGCG 834
||||| ||||| ||||| || || ||||| ||||||||||| |||| ||| | |||||
Sbjct 706 TTCCTCGTCCATAACCCCGAGGTCGCTCTTGTTCAAGCCCGTTGGAGATTCATGAACGCA 765
Query 835 AACAAATGCTTGATGACGAGGATGCAAGAGATGTCTCTCAACTATCATTTCAAAGTGGAA 894
||||| ||||||||||||||||||||||||||||| |||||||| || |||| | |||
Sbjct 766 AACAAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCAGAA 825
Query 895 CAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGGTTTAATGGAACCGCGGGTGTATGG 954
|||||||| || || ||||||||||| ||||| | || |||||||| ||||||||||||
Sbjct 826 CAAGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGG 885
Query 955 AGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAA-GGACCACAGTAGAGGACAT 1013
||||| | || ||||||| ||| ||||||||| | | | ||||||| |||||||||||
Sbjct 886 AGAATGGCCGCGATGGAAGAAGCTGGAGGATGGCA-TGACCGGACCACTGTAGAGGACAT 944
Query 1014 GGACTTGGCTGTTCGTGTTGGTCTTCAT-GGCTGGAAATTTGTCTACCTTAACGACCTCA 1072
||||||||| ||||||| |||||||| | |||||||||||||||| || || |||||||
Sbjct 945 GGACTTGGCCGTTCGTGCTGGTCTTC-TCGGCTGGAAATTTGTCTTTCTCAATGACCTCA 1003
Query 1073 CGGTGAGAAA-CGAGCTT-CCAAGCAAATTTAAGGCCTACAGATTCCAGCAACATAGGTG 1130
|||||| ||| ||| || ||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1004 CGGTGA-AAAGCGAA-TTACCAAGCAAATTTAAGGCCTTCAGATTCCAGCAACATCGATG 1061
Query 1131 GTCCTGTGGACCGGCGAATCTATTTAGAAAAATGACGATGGAGATCATTTTCAATAAGAG 1190
||| ||||| || || ||||| || || ||||||| |||||||| ||| |||||||||
Sbjct 1062 GTCTTGTGGTCCAGCTAATCTCTTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAG 1121
Query 1191 AGT-ATCAATTTGGAAGAAGTTTTATGTGATCTACAGCTT-TTTCTTCGTAAGGAA-AGT 1247
||| | | |||||||||||||| ||| || |||||||||| ||| ||| || |||| | |
Sbjct 1122 AGTGA-CGATTTGGAAGAAGTTGTATTTGGTCTACAGCTTCTTT-TTCTTACGGAAGA-T 1178
Query 1248 GG-CGGTACACTTCTTGACATTCTTC-TTCTACTGTATAATTGTGCCAACAAGTGTCTTC 1305
|| | |||| ||| || || ||| |||||||| | ||| | || ||||||||||||
Sbjct 1179 CATCG-TCCACTGCTTCACGTT-TTCGTTCTACTGCGTTATTCTTCCTACAAGTGTCTTC 1236
Query 1306 TTCCCTGAAATCCACATCCCATCTTGGTCTACCATTTACGTTCCCTCTTTGATCAGTATC 1365
||||| ||| || |||| ||| ||||||| || ||||| |||| ||| |||||| | ||
Sbjct 1237 TTCCCCGAAGTCAACATTCCAGCTTGGTCAACTTTTTACATTCCGTCTATGATCACTCTC 1296
Query 1366 TTCCA-CACCCTGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGGTCTTGTTCGA 1424
| | | | | | || || |||||||| |||||| |||||||||||||| ||||||| ||
Sbjct 1297 TGC-ATCGTCATTGCGACACCAAGATCATTCTACTTCGTGATATTTTGGATCTTGTTTGA 1355
Query 1425 GAATGTAATGGCTATGCATCGAACCAAAGGTACGTGCATTGGCCTACTTGAAGGAGGAAG 1484
|| |||||| ||||||| || || || || || | ||| ||| |||| ||| | |||
Sbjct 1356 AAACGTAATGTCTATGCACCGGACGAAGGGAACTTTCATCGGCATACTCGAAAAACAAAG 1415
Query 1485 AGTAAACGAATGGGTTGTGACCGAAAAACTAGGAGATGCT-TTGAAGAGTAAGCTACTCT 1543
||| |||||||||||||| || || ||| ||||||||||| || |||| ||||||||| |
Sbjct 1416 AGTTAACGAATGGGTTGTCACTGAGAAATTAGGAGATGCTCTT-AAGACTAAGCTACT-T 1473
Query 1544 C-TCGGGTAGTCCAA---AGAAAATCTTGTTATC---AAAGAGTGAATTCCAAGGAAGTG 1596
| |||| | | || || || | ||| || ||||||| || |||||||| ||
Sbjct 1474 CCTCGGATTGGAAAACCTAGTAA--CGGGTT-TCTTGAAAGAGTAAACTCCAAGGAGGTA 1530
Query 1597 ATGGTGGGGGTATACATATTAG-GATGTGCACT-CTATGGCCTGATCTATGGGCACACAT 1654
||||||||| ||||||| || | | ||||| | |||||| || ||| |||| ||||||
Sbjct 1531 ATGGTGGGGATATACATCTT-GTGTTGTGCT-TGCTATGGACTTTTCTTTGGGAACACAT 1588
Query 1655 GGTTACATTTCTATCTTTTTCTT-CAGGCCACAGCCTTTT-TCGTCTCCGGTTTTGGTTT 1712
|||| || ||||||| || | | || || || |||| |||| ||||| |||| ||
Sbjct 1589 TGTTATATCTCTATCTCTT-CATGCAAGCGGTTGC-TTTTCTCGTATCCGGAGTTGGCTT 1646
Query 1713 TGTCGGAACCTAA 1725
|||||| || |||
Sbjct 1647 TGTCGGCACTTAA 1659
> Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847
Length=969
Score = 374 bits (202), Expect = 2e-102
Identities = 399/492 (81%), Gaps = 22/492 (4%)
Strand=Plus/Plus
Query 594 TGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGGAGAGATAACAGGAACGG 653
|||||| ||| ||||||||||| |||| |||| |||||| |||||||| ||||| || ||
Sbjct 483 TGCAAAGTGGGAAAGCCAAGGCGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGG 542
Query 654 CTACAAAGCCGGAGCTATGAAAGAA-GCTCTTACGCAGAGCTACGTCAAGCAATGC-GAC 711
||| |||||||||||| | ||| || || | | ||| | |||||| |||| |||| ||
Sbjct 543 CTATAAAGCCGGAGCTCTTAAACAAGGC-ATGAAGCACAACTACGTGAAGCTATGCAGA- 600
Query 712 T-TCGTAG-CAGTCTTCGATGCTGA-TTTCCAACCCGAGCCCGATTATCT-CATCCGCGC 767
| | || | || |||| || || || ||| ||||| ||||| ||||| || || ||| |
Sbjct 601 TAT-GTTGTCA-TCTTTGACGCAGACTTT-CAACCGGAGCCTGATTACCTCCA-ACGCTC 656
Query 768 TGTCCCTTTCCTTGTCCACAACCCTGACGTTGCTCTAGTTCAAGCCCGATGGATATTTGT 827
|||||| ||||| || || ||||| || || ||||| |||||||||||||||| ||| |
Sbjct 657 TGTCCCCTTCCTCGTTCATAACCCCGAGGTCGCTCTTGTTCAAGCCCGATGGAGATTCAT 716
Query 828 TAACGCGAACAAATGCTTGATGACGAGGATGCAAGAGATGTCTCTCAACTATCATTTCAA 887
||| | ||||| ||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 717 GAACTCAAACAAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCAT 776
Query 888 AGTGGAACA-AGAATCAGGGTCGACTAGACATGCTTTCTTCGGGTTTAATGGAACCGCGG 946
| |||| | |||||| || || ||||||||||| ||||| | || |||||||| ||||
Sbjct 777 GGCGGAA-ATAGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGG 835
Query 947 GTGTATGGAGAAT--ATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAA-GGACCACAG 1003
||||||||||||| | || ||||||||| ||| ||||||||| | | | ||||||| |
Sbjct 836 GTGTATGGAGAATGGA-CG-CAATGGAAGAAGCTGGAGGATGGCA-TGACCGGACCACTG 892
Query 1004 TAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCAT-GGCTGGAAATTTGTCTACCTT 1062
||||||||||||||||||| ||||||| |||||||| | |||||||||||||||| ||
Sbjct 893 TAGAGGACATGGACTTGGCCGTTCGTGCTGGTCTTC-TCGGCTGGAAATTTGTCTTTCTC 951
Query 1063 AACGACCTCACG 1074
|| |||||||||
Sbjct 952 AATGACCTCACG 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71647750845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5