BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16690.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493208 jgi|Araly1|493208|fgenesh2_kg.7__2641__AT4G16690.1 1362 0.0
Ahg356177 jgi|Araly1|356177|fgenesh1_pg.C_scaffold_7003350 917 0.0
> Ahg493208 jgi|Araly1|493208|fgenesh2_kg.7__2641__AT4G16690.1
Length=1038
Score = 1362 bits (737), Expect = 0.0
Identities = 849/903 (94%), Gaps = 8/903 (1%)
Strand=Plus/Plus
Query 25 GTTATCTCCAAACTGTGGACCAAAACTGCA-TAACGTGTT-AAAAGGTGAGATAGTGTA- 81
|||||||||||||||||||||||||||||| | | ||||| | || |||| | |||||
Sbjct 1 GTTATCTCCAAACTGTGGACCAAAACTGCATTCA-GTGTTGACTAGTTGAG-T-GTGTAC 57
Query 82 AAAGCATTGATCAAGATTCATGCAATGGGAGGAGAAGGTGGTGCTGAGCCCGTAATTCAC 141
||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 58 AAAGCATAGATCAAGATTCATGCAATGGGAGGAGATGGTGGTGCTGATCCCGTAATTCAC 117
Query 142 TTTGTGTTTGTTCATGGAGCCAGTCACGGAGCTTGGTGTTGGTATAAACTCACCACTCTT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTTGTGTTTGTTCATGGAGCCAGTCACGGAGCTTGGTGTTGGTATAAACTCACCACTCTT 177
Query 202 CTCGACGCCGCCGGGTTCAAATCAACCTCCGTAGATCTCACCGGCGCTGGCATCAGCCTC 261
|||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 178 CTCGACGCCGCCGGATTCAAATCCTCCTCCGTGGACCTCACCGGCGCTGGCATCAGCCTC 237
Query 262 ATAGACTCTAACATCGTCTTCGACTCCGACCAATATAACCGTCctctcttctctctctTG 321
| |||||||||| ||| | ||||| |||||||||||||||||||||||| ||||||||
Sbjct 238 ACCGACTCTAACACCGTAATGGACTCTGACCAATATAACCGTCCTCTCTTCACTCTCTTG 297
Query 322 TCCGATCTCCCTCCTCACCACAAAGTCATACTCGTTGGACATAGCATCGGTGGAGGAAGT 381
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TCCGATCTCCCTCCTCACCACAAAGTCATACTCGTTGGACATAGCATCGGCGGAGGAAGT 357
Query 382 GTCACCGAAGCTCTTTGCAAGTTCACTGACAAAATCTCCATGGCCATTTACCTCGCGGCT 441
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 358 GTCACCGAAGCTCTTTGCAAGTTCACAGACAAAATCTCCATGGCCATTTACCTCGCAGCT 417
Query 442 TCCATGGTTCAACCCGGATCCATCCCTTCTCCGCATCTTTCAAACATACATGTGGGAGAA 501
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 418 GCCATGGTTCAACCCGGATCCATCCCTTCTCCAAATCTTTCAAACTTTCATGTGGGAGAA 477
Query 502 GAAGATATATGGGAGTACACATATGGTGAAGGTACCGATAAACCACCCACCGG-AGTCCT 560
||||| ||||||||||||| ||||||||||||| ||||||| |||||||| || | ||||
Sbjct 478 GAAGAAATATGGGAGTACATATATGGTGAAGGTGCCGATAAGCCACCCACTGGCA-TCCT 536
Query 561 CATGAAACCGGAGTTTATACGCCATTATTACTATAGCCAAAGCCCTCTTGAGGACGTAAC 620
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATGAAGCAGGAGTTTAGACGCCATTATTACTATAGCCAAAGCCCTCTTGAGGACGTAAC 596
Query 621 TTTGTCATCTAAGCTGTTGCGTCCTGCTCCTATGAGGGCCTTTCAAGATCTTGATAAGCT 680
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 597 TTTGTCATCTAAGCTGTTGCGTCCTGCTCCTGTGAGGGCCTTTCAAGATCTTGGTAAGCT 656
Query 681 ACCTCCAAATCCCGAGGCCGAGAAAGTTCCTCGAGTTTACATCAAGACTGCTAAGGATAA 740
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 GCCTCCAAATCCCGAGGCCGAGAAAGTTCCTCGAGTGTACATCAAGACTGCTAAGGATAA 716
Query 741 TCTATTTGATTCTGTGCGTCAAGACCTTTTGGTGGAGAATTGGCCACCTTCTCAGCTGTA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 TCTATTTGATTCTGTGCGTCAAGACCTTTTGGTGGAGAATTGGCCACCTTCTCAGTTGTA 776
Query 801 TGTCTTGGAGGATAGTGACCATTCTGCTTTCTTCTCTGTCCCAACTACCTTATTCGCGTA 860
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 TGTCTTGGAGGAGAGTGACCATTCTGCTTTCTTCTCTGTCCCAACTACCTTATTCACGTA 836
Query 861 TCTCCTCCGTGCGGTTTCTTTTCTTCAACGATAAACTTCAACTTATCCTTCATACATTCC 920
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 837 TCTCCTCCGTGCGGTTTCTTTTCTTCAACGATAAACTTAAACGTATCCTTCCTACATTCC 896
Query 921 GAT 923
|||
Sbjct 897 GAT 899
Score = 202 bits (109), Expect = 5e-51
Identities = 129/139 (93%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1009 TTTATGTTATTTGATTTGAGTTTGAATAAGCTTTACATGCGAAGCAATCCAGGGTAAGAG 1068
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 900 TTTATGTTATTTGATTTGAGTTTGAATAAGCTTTACATGTGAAGCAATCCGGGGTAAGAG 959
Query 1069 AGATAGAAATCTCCTTGTAAAGGAATGTTATTTGTATCCTTGGTTTCTTTTTGTCAATAA 1128
||| ||| ||||||||||| ||| | ||||| ||||||||||||||||||| |||||||
Sbjct 960 AGACAGATATCTCCTTGTAGGGGATTATTATTGGTATCCTTGGTTTCTTTTTATCAATAA 1019
Query 1129 ATCTATCATAGTAGCTAAG 1147
|||||||||||||||||||
Sbjct 1020 ATCTATCATAGTAGCTAAG 1038
> Ahg356177 jgi|Araly1|356177|fgenesh1_pg.C_scaffold_7003350
Length=792
Score = 917 bits (496), Expect = 0.0
Identities = 697/795 (88%), Gaps = 9/795 (1%)
Strand=Plus/Plus
Query 106 ATGGGAGGAGA-AGGTGGT---GCTGAGCCCGTAATTCACTTTGTGTTTGTTCATGGAGC 161
||||||||||| | ||||| | ||| ||| ||||||||||||||||||||||||| ||
Sbjct 1 ATGGGAGGAGACA-GTGGTGAAGATGATCCCATAATTCACTTTGTGTTTGTTCATGGGGC 59
Query 162 CAGTCACGGAGCTTGGTGTTGGTATAAACTCACCACTCTTCTCGACGCCGCCGGGTTCAA 221
||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||| |||||
Sbjct 60 TAGTCACGGAGCTTGGTGTTGGTATAAAATCATCACTCTTCTAGACGCGGCCGGATTCAA 119
Query 222 ATCAACCTCCGTAGATCTCACCGGCGCTGGCATCAGCCTCATAGACTCTAACATCGTCTT 281
||| || | || || |||||||| ||||||||||| |||| |||||||||| ||||||
Sbjct 120 ATCCTCCACTGTCGACCTCACCGGTGCTGGCATCAGTCTCACGGACTCTAACACCGTCTT 179
Query 282 CGACTCCGACCAATATAACCGTCctctcttctctctctTGTCCGATCTCCCTCCTCACCA 341
| |||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 180 CCACTCTGACCAATATAACCGTCCTCTCTTTTCTCTCTTGTCCGACCTCCCTCCTTTCCA 239
Query 342 CAAAGTCATACTCGTTGGACATAGCATCGGTGGAGGAAGTGTCACCGAAGCTCTTTGCAA 401
||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 240 CAAAGTCATACTCGTCGGACATAGCATCGGTGGAGCAAGTGTCACCGAAGCCCTCTGCAA 299
Query 402 GTTCACTGACAAAATCTCCATGGCCATTTACCTCGCGGCTTCCATGGTTCAA-CCCGGAT 460
||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct 300 GTTCACTGACAAAATCTCCATGGCCATTTACATCACGGCTTCCATGGTT-AAGCCCGGAT 358
Query 461 CCATCCCTTCTCC-GCATCTTTCAAACATACATGTGGGAGAAGAAGATATATGGGAGTAC 519
||||| ||||||| | |||||| ||||| || || |||| | ||||| ||||| || |||
Sbjct 359 CCATCTCTTCTCCAG-ATCTTTTAAACAAACTTGAGGGATATGAAGAAATATGTGACTAC 417
Query 520 ACATATGGTGAAGGTACCGATAAACCACCCACCGGAGTCCTCATGAAACCGGAGTTTATA 579
|||| |||||||||||||||||| |||||||| || || |||| || |||||||| |
Sbjct 418 ACATTTGGTGAAGGTACCGATAAGCCACCCACTGGCTTCATCATCAAGGAGGAGTTTAGA 477
Query 580 CGCCATTATTACTATAGCCAAAGCCCTCTTGAGGACGTAACTTTGTCATCTAAGCTGTTG 639
|||||||||||||||| ||||||||||||||||||| ||||| | |||||||| |||||
Sbjct 478 CGCCATTATTACTATAACCAAAGCCCTCTTGAGGACATAACTCTATCATCTAAATTGTTG 537
Query 640 CGTCCTGCTCCTATGAGGGCCTTTCAAGATCTTGATAAGCTACCTCCAAATCCCGAGGCC 699
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 538 CGTCCTGCTCCTATGAGAGCCTTTCAAGATCTTGATAAGCTGCCTCCAAATCCCAAGGCC 597
Query 700 GAGAAAGTTCCTCGAGTTTACATCAAGACTGCTAAGGATAATCTATTTGATTCTGTGCGT 759
||||| ||||||||||| |||||||||||||||||||| ||| || ||||| || |||||
Sbjct 598 GAGAATGTTCCTCGAGTGTACATCAAGACTGCTAAGGACAATATAATTGATCCTATGCGT 657
Query 760 CAAGACCTTTTGGTGGAGAATTGGCCACCTTCTCAGCTGTATGTCTTGGAGGATAGTGAC 819
||||||| ||||||||||||||||| || ||| |||||||||||||||| |||||
Sbjct 658 CAAGACCAAATGGTGGAGAATTGGCCAGTTTTTCATATGTATGTCTTGGAGGAGAGTGAT 717
Query 820 CATTCTGCTTTCTTCTCTGTCCCAACTACCTTATTCGCGTATCTCCTCCGTGCGGTTTCT 879
|||||| ||||||||||||| |||||||||||||||| |||||||| | ||||||||||
Sbjct 718 CATTCTCCTTTCTTCTCTGTGCCAACTACCTTATTCGATTATCTCCTTCATGCGGTTTCT 777
Query 880 TTTCTTCAACGATAA 894
| ||| ||| |||||
Sbjct 778 TCTCTCCAAAGATAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5