BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16710.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg946563 jgi|Araly1|946563|scaffold_702792.1 859 0.0 Ahg943308 jgi|Araly1|943308|scaffold_603852.1 394 6e-109 > Ahg946563 jgi|Araly1|946563|scaffold_702792.1 Length=573 Score = 859 bits (465), Expect = 0.0 Identities = 541/577 (94%), Gaps = 8/577 (1%) Strand=Plus/Plus Query 189 AATCGAGAAGTTTAAAAATGGAGGAGGATAGAGAGAATGCAAAGAGAGTAGTGTTTGTAA 248 ||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 4 AATCGAGTGGTGTAAAAAT---GGAGGATAGAGAGAATGCGAAGAGAGTAGTGTTTGTAA 60 Query 249 CTGTAGGAACAACGAGTTTCGATGCTCTTGTGAAAGCAGTGGTTAGTCAAAATGTTAAAG 308 ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct 61 CTGTAGGAACAACGAGTTTCGATGCGCTTGTGAAAGCAGTGGTTAGTGAAGATGTTAAAG 120 Query 309 ACGAACTGCAGAAGAGAGGATTTACTCATCTTCTTATTCAAATGGGTCGAGGAATCTTTT 368 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 ACGAATTGCAGAAGAGAGGATTTACTCATCTTCTCATTCAAATGGGTCGAGGAATCTTTT 180 Query 369 TCCCAACTAAGTGTGATGGAGCGGATGGATCATTAGTTGTGGATTACTTCACATTTTCCT 428 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCCAAATAAGTGTGATGGAGCAGATGGATCATTAGTTGTGGATTACTTCACATTTTCCT 240 Query 429 CAAGTATCGCTGATTATATTCGATCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAA 488 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 241 CGAGTATCGCTGATTATATTCGGTCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAA 300 Query 489 GTATATTTGAGACACTGAAACTAGGGAAACCATTGATTGTGGTAGTGAACGAAGATCTGA 548 | ||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 301 GCATATTCGAGACACTAAAACTCGGGAAACCGTTGATTGTGGTAGTCAACGAAGATCTGA 360 Query 549 TGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACA 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACA 420 Query 609 CTCGTCCTCACTCCCTTCATCAAACCTTGACGAAAATGGAGTTGGGGTCTCTGGTTCAGT 668 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 421 CTCGTCCTCACACCCTTCATCAAACCTTGACGAAAATGGAGTTGGAGTCTCTGGTTCAAT 480 Query 669 ATACTCCAGGTGATGGAACTCCTGTTGCTCGCATTATCGACAGGTTCCTTGGATTCCCTG 728 |||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 481 ATACTCCAGGGGACGGAACTCCTGTTGCCCGCATTATCGACAGGTTCCTCGGATTCCCTG 540 Query 729 ATGATTAAACACAACACATACATGAAAACAAGTGTTT 765 |||||||| || || | || ||||||||||||||| Sbjct 541 ATGATTAAGCAGAA-A--TA--TGAAAACAAGTGTTT 572 > Ahg943308 jgi|Araly1|943308|scaffold_603852.1 Length=457 Score = 394 bits (213), Expect = 6e-109 Identities = 242/256 (95%), Gaps = 1/256 (0%) Strand=Plus/Plus Query 218 AGAGAGAATGCAAAGAGAGTAGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCTCTT 277 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 163 AGAGAGAATGCGAAGAGAG-AGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCGCTT 221 Query 278 GTGAAAGCAGTGGTTAGTCAAAATGTTAAAGACGAACTGCAGAAGAGAGGATTTACTCAT 337 |||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||| Sbjct 222 GTGAAAGCAGTGGTTAGTGAAGATGTTAAAGACGAATTGCAGAAAAGAGGATTTACTCAT 281 Query 338 CTTCTTATTCAAATGGGTCGAGGAATCTTTTTCCCAACTAAGTGTGATGGAGCGGATGGA 397 ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 282 CTTCTCATTCAAATGGGTCGAGGAAACTTTTTCCCAACTAAGTGTGATGGAGCAGATGGA 341 Query 398 TCATTAGTTGTGGATTACTTCACATTTTCCTCAAGTATCGCTGATTATATTCGATCTGCA 457 |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| Sbjct 342 TCATTAGTTGTGGATTACTTCACATTTTCCTCGAGTATCGCTGATTATATTCGGTTTGCA 401 Query 458 TCTCTTGTTATTAGTC 473 ||||||| |||||||| Sbjct 402 TCTCTTGCTATTAGTC 417 Score = 71.3 bits (38), Expect = 1e-11 Identities = 51/57 (89%), Gaps = 2/57 (4%) Strand=Plus/Plus Query 122 AGCAAGATTCTTGGATCTGCCTCTTAAGATCGATCGGTGCTTTTG--TATCCTCAGA 176 ||||||||||||||||||||||||||||| | ||||||||||| | | |||||||| Sbjct 109 AGCAAGATTCTTGGATCTGCCTCTTAAGACCAATCGGTGCTTTCGCGTGTCCTCAGA 165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5