BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17070.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890516 jgi|Araly1|890516|Al_scaffold_0007_2502 1620 0.0
> Ahg890516 jgi|Araly1|890516|Al_scaffold_0007_2502
Length=1029
Score = 1620 bits (877), Expect = 0.0
Identities = 981/1032 (95%), Gaps = 3/1032 (0%)
Strand=Plus/Plus
Query 172 ATGCCCCGTCGATTAAACGACGGCGAGCCTGGCCGTTTTACCGCCACCGTTCTTCTTTTA 231
|||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||
Sbjct 1 ATGCCCCGTCGATTAAACGACGTCGAGCCTGGCCGTTTTACCGCCACTGCTCTCCTTTTA 60
Query 232 ATCGGTTTAATCTCTTGTGTTATCGTCTACGCTGTTTTCTCTTCTGTCCTCCGTCCATCC 291
|||||||| |||||||||||||||||||||||||| |||||| || |||||||||| |
Sbjct 61 ATCGGTTTGATCTCTTGTGTTATCGTCTACGCTGTCTTCTCTACTATCCTCCGTCC-T-- 117
Query 292 CAAGATCCTACACTCGTTGATTCCGCGGTTCGATTCAAAGAGGAGCCGCGAGATCACGAT 351
||||||||||| |||||||||||||| |||||||||| |||| | |||||||||||||
Sbjct 118 CAAGATCCTACCCTCGTTGATTCCGCTGTTCGATTCACGGAGGGGTCGCGAGATCACGAC 177
Query 352 GCAACTGAAGACGGTGAAGGTGGGTGTTGCCGTGGAATTGATAATCTGGAGCTTTGGGGT 411
|| ||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GCGGCTGAAGAAGGTGGAGGCGGGTGTTGCCGTGGAATTGATAATTTGGAGCTTTGGGGT 237
Query 412 CCGGCGGTGAAGTGGGGCACGGATTTTAAGTTTAATTCGTCTGATGGATGTTGTAAAGCT 471
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CCGGCGGTGAAGTGGGGGACGGATTTTAAGTTTAATTCGTCGGATGGATGTTGTAAAGCT 297
Query 472 TGTAAAGTTATGTGTAGTGGCAACGATGGACCTTGCTTGTGCGATTCATGGGTGTTTTGT 531
||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 298 TGTAAAGTTATGTGTAGCGGTAACGATGGACCTTGCTTGTGCGATTCATGGGTCTTCTGT 357
Query 532 GGGAACAAAGAGGATTGTGGCTCGAAGTTTGGAGAGTGTTGGTTGAAGAAGCAAAAAGAT 591
|| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGAAACAAAGACGCTTGTGGGTCGAAGTTTGGAGAGTGTTGGTTGAAGAAGCAAAAAGAT 417
Query 592 GTCTTGGTGCCTGATCGACAAGGAGGTGGCGAGAAAGTAATGTGGACATCTGGACTTATC 651
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 418 GTCTTGGTGCCTGATCGACAAGGAGGTGGGGAGAAAGTAATGTGGACATCTGGGCTTATC 477
Query 652 TTCGGACAAGGCCAGGGCATTGTTGGTTTTGAGACGGAACACGGCGTAATTCATGTCAAA 711
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TTCGGACAAGGCCAGGGCATTGTTGGTTTTGAAACGGAACACGGCGTAATTCATGTCAAA 537
Query 712 CTTCACCCTGAATGCGCTCCTCACTCAGTATACTACATTCTGAGTTTGTTAACTCTACGC 771
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTCACCCTGAGTGCGCTCCTCACTCAGTATACTACATTCTGAGTTTGTTAACTCTACGC 597
Query 772 CATTGTGCAGGCTGCCAGTTTCATCGAGCAGAGAACCGGGGATCATATTGGGACTCAGAA 831
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CACTGTGCAGGCTGCCAGTTTCATCGAGCAGAGAACCGGGGATCATATTGGGACTCAGAA 657
Query 832 GGCAATCATGTAAAGAATGCTCCCTTTGGTCCACCATACGCTATGATTCAAGGAATACTC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGCAATCATGTAAAGAATGCTCCCTTTGGTCCACCATACGCTATGATTCAAGGAATACTC 717
Query 892 CAGGCCGAGGGAAACATTTTCACACCGATCCCAACCGAGCACTGCCCAACTATAAGCCGT 951
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 718 CACGCCGAGGGAAACATGTTCACACCGATTCCAACCGAGCACTGCCCAACTATAAGACGT 777
Query 952 GGCTCGGTGGCGTGGGTCGGCTCGGGTCCAGAATTCTTCATCAGTTTAGCAAACCACCAC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGCTCGGTGGCGTGGGTCGGCTCGGGTCCAGAATTCTTCATCAGTTTAGCAAACCACCAC 837
Query 1012 GAATGGAAACAATCTTACACGGTATTCGGCTTAGTTCTACCAGAAGACATGGATGTCGTG 1071
|||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||
Sbjct 838 GAATGGAAACAATCTTACACTGTATTCGGCTCAGTTCTACCGGAAGACATGGATGTTGTG 897
Query 1072 GAGACAATTGCCGGTTTACCAACAAGAGCCGATGTCTGGAACAGCGTCAATGTCTCTGTG 1131
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAGACGATTGCCGGTTTACCGACAAGAGCCGATGTCTGGAACAGCGTCAATGTCTCTGTG 957
Query 1132 CTGGAGAAACCGGTTTCCTTAACCGTACGGAGAATGAAGACGGGCCAAGAACAAGAAGAA 1191
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 CTGGAGAAACCGGTGTCCTTAACCGTATGGAGAATGAAGACGGGCCAAGAACAAGAAGAA 1017
Query 1192 ACCGGTTCATGA 1203
||||||||||||
Sbjct 1018 ACCGGTTCATGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5