BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17080.1 Length=2053 Score E Sequences producing significant alignments: (Bits) Value Ahg890515 jgi|Araly1|890515|Al_scaffold_0007_2501 2484 0.0 Ahg482483 jgi|Araly1|482483|fgenesh2_kg.4__1543__AT2G35170.1 976 0.0 > Ahg890515 jgi|Araly1|890515|Al_scaffold_0007_2501 Length=1539 Score = 2484 bits (1345), Expect = 0.0 Identities = 1481/1546 (96%), Gaps = 11/1546 (1%) Strand=Plus/Plus Query 120 ATGCATCTGAAGAATTCTACTGTAGCAGAACGGCGGTACATCGGAAAAGAAACCGCCGGT 179 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATGCATCTGAAGAATTCAACTGTAGCAGAACGGCGGTACATCGGAAAAGAAACCGCCGCT 60 Query 180 TATTTAACTTCTTCCTCCGATTTGGATCCGAAACCTAAGATT-AA-A-CATCATCGTCCT 236 | |||| ||||||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 61 TTTTTATCTTCTTCCTCCGATTTGGATCCGAAACCTAAGATTAAACATCATCATCGTCCT 120 Query 237 CTTCAGGTACCTGAGATTTTGACTCCAGACATTGGTGCTGGTGCTGGATTCAGTGTGTAT 296 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 121 CTTCAGGTACCTGAGATTCTGACTCCAGACATTGGTGCTGGCGCTGGATTCAGTGTGTAT 180 Query 297 AATAATCAAGTTCAAGCTCAGAGTCGTCATCATCTGACGGTTGAAATCCCAGATTCATCG 356 || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 181 AACAATCAAGTTCAAGCTCAGAGTCG---TCATCTAACGGTTGAAATCCCAGATTCATCG 237 Query 357 TCTCACAATCTTACATCTAAGAGACCTGTGGTGGTTCAATCTTCTAATCCGTTCAACGTT 416 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TCTCAGAATCTTACATCGAAGAGACCTGTGGTGGTTCAATCTTCTAATCCGTTCAACGTT 297 Query 417 GACGATTTCCGAAGACAACAACGCGCAAGCTTGGGTCCGATTTCATCTTATTGTCCGTCG 476 ||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||| Sbjct 298 GACGATTTCAGAAG---ACAACGCGCAAGCTTGGGTTCAATTTCATCTTATTGTCCGTCG 354 Query 477 TATCTTTTATCGTGGTTTTCTTCTTCTCTTCCATCGATCCCATCGGCCACTAATCAGAAG 536 |||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 355 TATCTTTTGTCGTTTTTTTCTTCATCTCTTCCATCGATCCCATCGGCGACTAATCAGAAG 414 Query 537 CTTCTCCGTCATGTTCTTAGAGTCCGTTTGATATGTttccatcttcgtttcttacttctt 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CTTCTCCGTCATGTTCTTAGAGTCCGTTTGATATGTTTCCATCTTCGTTTCTTACTTCTT 474 Query 597 ctctctgttcctcctctctacatcttcttcttgttgattagtttcagattcttccttctc 656 |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 475 CTCTCTGTGCCTCCTCTCTATATCTTTTTCTTGTTGATTAGTTTCAGATTCTTCCTTCT- 533 Query 657 ttt-gtcttctcgattatcgctttttctttcgtcctttcgatctctctcAAATTCGCTCT 715 ||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 534 TTTCGTCTTCTCGATAATCGCTTTTTCTTTTGTCCTTTCGATCTCTCTCAAGTTCGCTCT 593 Query 716 TCCTCACTTACCATCGATTCGTTTGATTATCGCTCGGTTACTTTCTCTCAAGCTTACCCC 775 ||||||||||||||| |||||||||||||||||||| || || || |||||||||| ||| Sbjct 594 TCCTCACTTACCATCAATTCGTTTGATTATCGCTCGATTGCTGTCCCTCAAGCTTAGCCC 653 Query 776 TACCAGATCATCCTCTTCATCTCAGGAGAACACTAAACATGTTATTTGGTCAATTGGGTC 835 ||||||||| || || || ||||| |||| ||||||||||||| |||||||||||||||| Sbjct 654 TACCAGATCCTCGTCGTCGTCTCAAGAGAGCACTAAACATGTTGTTTGGTCAATTGGGTC 713 Query 836 TAAGCCTGTGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCAGAAGTACAGCTCTGG 895 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 GAAGCCTGTGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCAGAAGTACAGCTCTGG 773 Query 896 TGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAGTGGAGTTTATTACTA 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 TGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAGTGGAGTTTATTACTA 833 Query 956 TTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAGTATGATGGATATGGAGT 1015 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 834 TTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAATATGATGGATATGGAGT 893 Query 1016 TGAAACTTGGGCTAAAGGGAGTAGGTACCGAGGTCAATACAGGCAAGGGATGAGACATGG 1075 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 894 TGAAACATGGGCTAAAGGAAGTAGGTACCGAGGTCAATACAGGCAAGGGATGAGACATGG 953 Query 1076 AACTGGTATCTACAGATTTTATACAGGGGATGTATATGCTGGTGAGTGGTCTAATGGACA 1135 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 AACTGGTATCTATAGATTTTATACAGGGGATGTATATGCTGGTGAGTGGTCTAATGGACA 1013 Query 1136 GAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTTTTGTTGGAGAGTTTAA 1195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 GAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTTTTGTTGGAGAGTTTAA 1073 Query 1196 ATGGGGTGTCAAACATGGCCTTGGTCATTATCATTTCAGAAATGGTGATACATATGCTGG 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 ATGGGGTGTCAAACATGGCCTTGGTCATTATCATTTCAGAAATGGTGATACATATGCTGG 1133 Query 1256 GGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAATTTGGAAACGGGCATCG 1315 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 AGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAATTTGGAAACGGGCATCG 1193 Query 1316 GTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGGTATGTACACGTTCAGGAA 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 GTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGGTATGTACACGTTCAGGAA 1253 Query 1376 TGGTGAGACACAGGCAGGCCATTGGGAAGACGGAGTTCTTAACTGTCCTACCGAGCAGAC 1435 |||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| Sbjct 1254 TGGTGAGACACAGGCAGGCCATTGGGAAGATGGAGTTCTCAGCTGTCCTACCGAGCAGAC 1313 Query 1436 CACTCGCCCTGATTCATCGTTTTCCATCAGTCATTCCAAGGTTGTCGACACTGTCCAGCA 1495 |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 1314 CACTCGTCCTGATTCATCGTTTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGCA 1373 Query 1496 AGCAAGGAAAGCAGCCAAGAAAGCACGCGAAGTTGTGAAAGTTGAAGAGAGAGTGAACAG 1555 |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1374 AGCAAGGAAAGCAGCCGAGAAAGCACGTGAAGTTGTCAAAGTTGAAGAGAGAGTGAACAG 1433 Query 1556 AGCAGTGATGGTCGCAAACCGAGCAGCAAATGCTGCTAGAGTTGCTGCTACAAAGGCTGT 1615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 AGCAGTGATGGTCGCAAACCGAGCAGCAAATGCTGCTAGAGTTGCTGCTACAAAGGCTGT 1493 Query 1616 CCAAACCCAAACATTTCATTGTAGTAGTGGTGACGATCCCTTGTGA 1661 ||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1494 CCAAACCCAAACATTTCATTGTAGTGGTGGTGATGATCCCTTGTGA 1539 > Ahg482483 jgi|Araly1|482483|fgenesh2_kg.4__1543__AT2G35170.1 Length=1798 Score = 976 bits (528), Expect = 0.0 Identities = 932/1122 (83%), Gaps = 48/1122 (4%) Strand=Plus/Plus Query 533 GAAGCTTCTCCGTC-ATGTTCTTAGAGTCCGTTTGATATGTttccatcttcgtttcttac 591 ||||||||| || | || ||| ||| ||||||||| |||||||||||||||||||| | Sbjct 480 GAAGCTTCTACG-CTATACCCTTCGAGCCCGTTTGATTTGTTTCCATCTTCGTTTCTTGC 538 Query 592 ttcttctct-ctgttcctcctctctacatcttctt-cttgttgattagt-ttcagat-tc 647 ||||||| | |||| |||||| | ||||||||||| |||| |||| | | ||| | | || Sbjct 539 TTCTTCT-TGCTGTCCCTCCTTTATACATCTTCTTCCTTG-TGATCAATCTTC-G-TATC 594 Query 648 ttccttc-tctttgtcttct-cgattatcgctttttctttcgtcctttcgatctctctcA 705 || |||| || | |||| | ||||||||||| | |||||| |||| ||||||||||||| Sbjct 595 TTTCTTCGTC-TAATCTT-TGCGATTATCGCTCTGTCTTTCATCCTCTCGATCTCTCTCA 652 Query 706 AATTCGCTCTTCCTCACTTACCATCGATTCGT-TTGATTATCGCTCGGTTACTTTCTCTC 764 |||||||||||||||||||||| || |||||| || || |||| || || || | || Sbjct 653 AATTCGCTCTTCCTCACTTACCGTCAATTCGTCTT-TTTGTCGCACGCTTGCTGAC-CT- 709 Query 765 AAGCTTACCCCTACCAGATCATCCTCTTCATCTCAG--GAGAAC-ACTAAACATGTTATT 821 ||| |||| |||||| | |||||| |||||| ||| || ||||| || || ||| Sbjct 710 ----TTATCCCTGCCAGAT--T-CTCTTCCTCTCAGCCGAGCACTACTAACCAAGTGATT 762 Query 822 TGGTCAATTGGGTCTAAGCCTG-TGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCA 880 ||||| |||||||| ||||| | || | ||||| |||||||| || || || |||||||| Sbjct 763 TGGTCCATTGGGTCGAAGCCAGTTG-CGGAGAATAAGACCAATTCAGGATCTTGGGTTCA 821 Query 881 GAAGTACAGCTCTGGTGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAG 940 ||||| || || |||||| || || |||||||||||||| || |||||||||||||| Sbjct 822 GAAGTTTGGCACTAATGATGTGTATGAAGGAGAGTTTCATAGAGGAAAGTGTTCAGGAAG 881 Query 941 TGGAGTTTATTACTATTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAGTA 1000 |||||||||||||||||| ||||| || ||||||||||| || |||||||||||||| || Sbjct 882 TGGAGTTTATTACTATTCCATGAAAGGCAAATACGAAGGAGAGTGGATTGATGGGAAATA 941 Query 1001 TGATGGATATGGAGTTGAAACTTGGGCTAAAGGGAGTAGGTACCGAGGTCAATACAGGCA 1060 |||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||| ||| Sbjct 942 TGATGGTTATGGAGTAGAAACATGGGCTAAAGGAAGTAGGTATCGAGGTCAATATAGGTT 1001 Query 1061 AGGGATGAGACATGGAACTGGTA-TCTACAGATTTTATACAGGGGATGTATATGCTGGTG 1119 |||| | |||||||||| ||| | |||| | |||||||||||| ||||| |||||||||| Sbjct 1002 AGGGCTAAGACATGGAATTGG-AGTCTATACATTTTATACAGGAGATGTGTATGCTGGTG 1060 Query 1120 AGTGGTCTAATGGACAGAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTT 1179 ||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||| | | Sbjct 1061 AGTGGTCTAATGGCCAGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGAT 1120 Query 1180 TTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCA-TTATCATTTCAGAAAT 1238 | ||||||||| || |||||||||||||||||||||||| | ||| |||||||||||| Sbjct 1121 ACGATGGAGAGTTCAAGTGGGGTGTCAAACATGGCCTTGGT-AGTTACCATTTCAGAAAT 1179 Query 1239 GGTGATACATATGCTGGGGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAA 1298 || ||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1180 GGCGATGCATATGCTGGGGAGTATTTTGCTGACAAGATGCATGGTTTTGGAGTGTATCAC 1239 Query 1299 TTTG-GAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGG 1357 |||| ||| ||| ||| |||||||||||| ||||| ||||| ||||||||||| || || Sbjct 1240 TTTGCGAA-CGGCCATAAGTATGAAGGAGCTTGGCACGAGGGAAGAAGGCAAGGGCTCGG 1298 Query 1358 TATGTACACGTTCAGGAATGGTGAGACACAGGCAGGCCATTGGGAAGACGG-AGTTCTTA 1416 ||||||||| ||||||||||||||||| || || || |||||||||||||| | | || | Sbjct 1299 TATGTACACTTTCAGGAATGGTGAGACTCAAGCCGGACATTGGGAAGACGGTA-TACTCA 1357 Query 1417 ACTGTCCTACCGAGCAGACCACTC-G-CCCTGATTCATCGTTTT-CCATCAGTCATTCCA 1473 ||| ||||||||||||| | || | ||| ||| |||| |||| ||||||| ||||||| Sbjct 1358 GTTGTGCTACCGAGCAGACTA-TCCGTCCCGGAT-CATC-TTTTACCATCAGCCATTCCA 1414 Query 1474 AGGTTGTCGACACTGTCCAGCAAGCAAGGAAAGCAGCCAAGAAAGCACGCGAAGTTGTGA 1533 | ||||| || |||| ||||||||||||||||||| ||||||| | |||||||||| Sbjct 1415 AAGTTGTTGATGCTGTTGAGCAAGCAAGGAAAGCAGCTGAGAAAGCGCATGAAGTTGTGA 1474 Query 1534 AAGTTGAAGAGAG-AGTGAACAGAGCAGTGATGG-TCGCAAACCGAGCAGCAAATGCTGC 1591 |||| |||||||| | | || ||||| ||||||| | ||||| ||||||| ||||| || Sbjct 1475 AAGTGGAAGAGAGGA-TCAAGAGAGCGGTGATGGCT-GCAAATAGAGCAGCGAATGCGGC 1532 Query 1592 TAGAGTTGCTGCTACAAAGGCTGTCCAAACCCAAACATTTCA 1633 |||||| || ||| |||||||||||| ||||||| ||||| Sbjct 1533 TAGAGTAGCAGCTGTGAAGGCTGTCCAATCCCAAACCTTTCA 1574 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77208926615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5