BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17245.1
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946507 jgi|Araly1|946507|scaffold_702736.1 872 0.0
> Ahg946507 jgi|Araly1|946507|scaffold_702736.1
Length=548
Score = 872 bits (472), Expect = 0.0
Identities = 512/532 (96%), Gaps = 0/532 (0%)
Strand=Plus/Plus
Query 1 GAACTTGTCTGAGTTCCAATGCGGCTGCTGCTATCATCTGATCCCCAACCCGAACTTACG 60
||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 10 GAACTTGTCTGAGTTCCAATGCGGCTGCTGCTATCGTCTGATCCTCAACCCGCACTTACG 69
Query 61 TCTACATGTACCTCTCATAGTTGCGGCTGGAAGCCTTACTCTCATTCCAATGACTTTGCT 120
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 70 TCTACATGTACCTCTCAGAGTTGCGGATGGAAGCCTTATTCTCATTCCAATGACTTTGCT 129
Query 121 GCCAACGCGTTCCTCCTTCTCATCATCCTCTTCTGTTCTTTCATATGCGTCCTCTCTCTC 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 130 GCCAACGCGTTCCTCCTTCTCATTATCCTTTTCTGTTCTTTCATATGCGTCCTCTCTCTC 189
Query 181 CACGCTGCTATCCGTTGTTGCCTCCGTCCAGTCCTCCAACATGTCCCTAAGCCCGACCCG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 190 CACGCTGCCATCCGTTGTTGCCTCCGTCCAGTCCTCCAACATGTCCCTAAGACCGACCCG 249
Query 241 GACCTTGAGGCCACCCATCCAGACGCTCCCCCGACACTTGTCTACTCCCCGGGCCTAAAC 300
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 250 GACCTTGAGGCCACCCATCCCGACCCTCCCCCGACACTTGTCTACTCCCCGGGACTAAAC 309
Query 301 CTAGCAGGCAATGAAGCAGAGTGCATCATTTGTTTGTCTGAATTCCAAGACGGTGACACC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTAGCAGGCAATGAAGCCGAGTGCATCATTTGTTTGTCTGAATTCCAAGACGGTGACACC 369
Query 361 TTACGCGTGTTGGAGAGATGCAAACATGGATTCCACGTTTATTGCATCCAGAAGTGGCTC 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 370 CTACGCGTGTTGGAGAGATGCAAACATGGATTCCACGTTCATTGCATCCAGAAGTGGCTC 429
Query 421 TCCTCATCCCATTCTTCTTGTCCCACTTGCCGGACAAACATCTTCTCCTCCCCACCTCAA 480
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCCTCCTCCCACTCTTCTTGTCCCACTTGCCGGACAAACATCTTCTCCTCCCCACCTCAA 489
Query 481 CTTCACTCACAAAGCTTACCACTAACGAGTACACCTTAGTCAGATGGTAGCT 532
||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 490 CTTCACTCACAAAGCTTACCACTAACGAGTACATCTTAGTCATATGGTAGCT 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23483716872
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5