BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17260.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493149 jgi|Araly1|493149|fgenesh2_kg.7__2582__AT4G17260.1 1812 0.0
> Ahg493149 jgi|Araly1|493149|fgenesh2_kg.7__2582__AT4G17260.1
Length=1275
Score = 1812 bits (981), Expect = 0.0
Identities = 1176/1267 (93%), Gaps = 25/1267 (2%)
Strand=Plus/Plus
Query 15 GAAG-AAGAAACAG-AG-A--ATC--ATCAAATCAAATCCCTAAAAATTGATTTTTGAAA 67
|||| ||||||||| || | ||| ||||||||||||||||||||||||| | || ||
Sbjct 15 GAAGAAAGAAACAGAAGAATCATCAAATCAAATCAAATCCCTAAAAATTGA--TCTGCAA 72
Query 68 TGGAGAAGAACGCATCGACTTCGTCGTTGAAGGACTTGGGTCCGAGTGGTCTAGATCTAA 127
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 73 TGGAGAAAAACGCATCGACTTCATCGTTGAAGGACTTAGGTCCGAGTGGTCTAGATCTAA 132
Query 128 CCAGCGCCTTTTTCAAACCGATCCACAACTCCGATCCTTCTCTCCCTTCAAACCGACGTA 187
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 133 CCAGCGCCTTTTTCAAACCGATCCACAACTGCGCTCCTTCTCTCCCTTCAAACCGACGTA 192
Query 188 CCAAAGTCTCCGTCGTCGGAGTCGGAAACGTCGGAATGGCCATAGCTCAAACCATCCTCA 247
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 193 CCAAAGTCTCCGTCGTCGGAGTCGGTAACGTCGGAATGGCCATCGCTCAAACCATCCTCA 252
Query 248 CTCAAGATCTCGCAGACGAGATCGCTCTCGTTGACGCCAAACCCGATAAGCTTCGTGGCG 307
||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||||
Sbjct 253 CTCAAGATCTCGCCGACGATATCGCTCTCGTCGACGCTAAGCCTGATAAGCTTCGTGGCG 312
Query 308 AAATGCTTGATCTCCAACACGCCGCTGCTTTCCTCCCTCGAACTAAGATCACCGCTTCTG 367
| ||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 313 AGATGCTCGATCTCCAGCACGCCGCTGCTTTCCTCCCTCGAACCAAAATCACCGCTTCCG 372
Query 368 TTGATTACGAAGTCACCGCTGGATCTGATCTTTGTATCGTCACTGCTGGTGCTAGACAGA 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 TTGATTACGAAGTCACCGCTGGATCTGATCTTTGTATCGTCACTGCTGGTGCTAGACAAA 432
Query 428 ATCCAGGCGAGTCTAGACTCAATTTGCTTCAGAGGAACGTCGCTCTCTTCCGTCATATCA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATCCAGGCGAGTCTAGACTCAATTTGCTTCAGAGGAACGTCGCTCTCTTCCGTCATATCA 492
Query 488 TTCCTCCACTCGCTAAAGCTTCTCCTGATTCTATATTGATCATTGTTTCTAATCCCGTTG 547
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |
Sbjct 493 TTCCTCCACTCGCTAAAGCTTCTCCTGATTCAATCTTGATTATTGTTTCTAATCCTGTCG 552
Query 548 ATGTTTTGACTTACGTTGCTTGGAAACTCTCTGGCTTTCCGGTGAATCGGGTGCTTGGAT 607
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 553 ATGTTTTGACTTACGTTGCTTGGAAACTCTCTGGTTTTCCGGTGAATCGAGTTCTTGGAT 612
Query 608 CTGGTACTAATCTCGATTCTTCTCGGTTCCGATTCTTAATCGCAGATCATCTCGACGTTA 667
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 613 CTGGTACTAATCTCGATTCCTCTCGGTTCCGGTTCTTAATCGCAGATCATCTCGATGTTA 672
Query 668 ATGCTCAGGATGTACAGGCATTTATTGTGGGAGAGCATGGAGACAGCTCAGTGGCATTGT 727
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 673 ATGCTCAGGATGTACAGGCATTTATCGTGGGAGAGCATGGAGACAGCTCGGTGGCATTGT 732
Query 728 GGTCAAGCATTAGTGTTGGAGGCATTCCTGTCTTAAGCTTTTTGGAGAAG-AACCAGATA 786
|||| ||||| ||||||||||||||||||||| |||||||| |||||||| ||| |||||
Sbjct 733 GGTCGAGCATAAGTGTTGGAGGCATTCCTGTCCTAAGCTTTCTGGAGAAGCAAC-AGATA 791
Query 787 GCTTACGAGAAACAAACTCTTGAGGATATCCACCAAGCTGTTGTTGGTAGCGCCTATGAA 846
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 792 GCTTACGAGAAACAAACTCTTGAGGACATCCACCAAGCTGTAGTTGGCAGCGCCTATGAA 851
Query 847 GTGATTGGACTCAAGGGTTACACTTCTTGGGCCATTGGCTACTCAGTTGCTAATCTGGCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTGATTGGACTCAAGGGTTACACTTCTTGGGCCATTGGCTACTCAGTTGCTAATCTGGCT 911
Query 907 CGTACTATCCTCCGTGACCAGCGCAAGATCCACCCGGTTACTGTTCTTGCTCGTGGATTT 966
|| |||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 912 CGCACTATCCTCCGTGACCAGCGCAAGATCCACCCAGTTACGGTCCTTGCTCGTGGCTTT 971
Query 967 TATGGTGTTGATGGTGGTGATGTTTTCCTCAGTCTTCCGGCTTTGCTTGGAAGGAATGGT 1026
||||| |||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 972 TATGGAGTTGATGGCGGTGATGTCTTCCTCAGTCTCCCGGCTTTGCTTGGACGGAATGGT 1031
Query 1027 GTGGTTGCTGTGACCAATGTGCATATGACTGATGAAGAGGCTGAGAAGCTGCAGAAATCG 1086
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1032 GTGGTTGCTGTGACAAATGTGCATATGACTGATGAAGAGTCTGAGAAGCTGCAGAAGTCG 1091
Query 1087 GCAAAGACTATATTGGAGATGCAGAGCCAATTGGGACTTTGAATATCCACATCTATATAT 1146
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1092 GCAAAGACTATATTGGAGATGCAGAGCCAATTGGGACTTTGAAAATCCACATCTATAT-- 1149
Query 1147 GCATCAATTTCA-A--T-TT-TATAACTA-G-T-AT--CCC-ACGGGTGATAGTGTCGAT 1195
|| ||||||| | | | || | | || | | || ||| ||||||||||||||| ||
Sbjct 1150 GCTTCAATTTTATAACTATTGTTTTGTTATGATCATTACCCCACGGGTGATAGTGTCAAT 1209
Query 1196 GTTGATCACTATATGTTATGTAAATGCTTGTTCATGCAGAGTAATCCCAACTTTGAGTTC 1255
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1210 GTTGATCTCTATATGTTATGTAAATG-TTGTTCATGCAGAATAATCCCAACTTTGAGTTC 1268
Query 1256 TATTTTG 1262
| |||||
Sbjct 1269 TCTTTTG 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5