BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17480.1 Length=1341 Score E Sequences producing significant alignments: (Bits) Value Ahg493130 jgi|Araly1|493130|fgenesh2_kg.7__2563__AT4G17480.1 1716 0.0 Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 568 5e-161 > Ahg493130 jgi|Araly1|493130|fgenesh2_kg.7__2563__AT4G17480.1 Length=1123 Score = 1716 bits (929), Expect = 0.0 Identities = 1070/1136 (94%), Gaps = 17/1136 (1%) Strand=Plus/Plus Query 1 ATCAAACGTAAACTTATTGCTTTCTTCCTTCTGGTAGTTCCCCAAAACTCAAAGTACTCT 60 |||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||| Sbjct 1 ATCAAACGTAAACTTATTGCTTTCTTGCTTCTTGTGGTTCCCCAAAACTCAAAATACTCT 60 Query 61 TTTTCTGTGTAAACaaaaaaaaaaTCAACGGTACTCTTTCTCTTCTAAGTTGTTGTTCCA 120 |||| ||||||||| |||||| |||||||||| || ||||| ||| || | | ||| Sbjct 61 TTTTGTGTGTAAAC-----AAAAATAAACGGTACTC-TT-TCTTCCAAG-TG-T-TACCA 110 Query 121 TGGAGAAGAGTTTCCAGAA-ATC-AGCTCTCCTTGTGACCTTGACTCTCTTCTTCTTCAT 178 ||||||||||||||| || ||| | ||||||||||||| |||||| ||||||||||| | Sbjct 111 TGGAGAAGAGTTTCC-TAAGATCTA-CTCTCCTTGTGACATTGACTATCTTCTTCTTCCT 168 Query 179 TCCAGTTTCAATCTCGGTTCCATTCATTCTGTTTCATGGGATTAGAGATCAATGCTCCAA 238 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 169 TCCAGTTTCAATCTCGGTTCCATTCATTCTCTTTCATGGGATTAGAGATCAATGCTCAAA 228 Query 239 TGGTGGAGTGAGCAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCATGGATCTTG 298 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 229 TGGTGGAGTGAGAAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCCTGGATCTTG 288 Query 299 CTTAGAAATAGGAAATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAG 358 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 CTTAGAAATAGGAGATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAG 348 Query 359 TGTAGCGTGTGAGAAAGTTAAACAGATGAAGGATTTGAGTCAAGGCTACAACATTGTTGC 418 |||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| || Sbjct 349 TGTAGCGTGTGAGAAAGTTAAAAAGATGAAAGAGTTGAGTCAAGGCTACAACATTGTCGC 408 Query 419 ACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGTGACAATGCTCCTCC 478 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 409 ACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGCGACAATGCTCCTCC 468 Query 479 GGTCTTCAACTATATATCTTTAGGAGGTCCTCATGCTGGCATATCCGACATTCCCAAGTG 538 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 469 GGTCTTCAACTATATATCTTTAGAAGGTCCTCACGCTGGCATATCCGACATTCCCAAGTG 528 Query 539 TAATTCTACACTTTGCGAGTTGCTGAAAACAGCGGTCTACACCGACTTCGTACAAGATCA 598 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 529 TAATTCTACACTTTGCGAGTTGCTGAAAACAGAGGTCTACACCGACTTCGTACAGGATCA 588 Query 599 TATTGCTCCAAGTGGTTATATCAAGATTCCTACAGATATAAAAGATTACCTGGAACACTC 658 ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| Sbjct 589 TATTGCTCCAAGTGGTTATATCAAGATCCCTACCGATATAAAAAATTACCTGGAACACTC 648 Query 659 CAAGTATCTGCCAAAGATCAACAACGAGAGACCTAACGAAAGGAACACCACTTTTAAAGA 718 ||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 649 CAAGTATCTGCCACAGCTCAACAACGAGAGACCTAAAGAAAGGAACGCCACTTTTAAAGA 708 Query 719 CCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATGCAGTAGTGAT 778 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 709 CCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATACAGTAGTGAT 768 Query 779 TCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTC 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 TCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTC 828 Query 839 TCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACATTGGATGCTGC 898 |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| Sbjct 829 TCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACCTTGAATACTGC 888 Query 899 CAGAAAAGTTAAGTTTGTCAGTGTCCCTGGCGAGCACCTAAGAATAGCGCAAGACGACGT 958 | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 889 CGGAAAAGTTAAGTTTGTCAGTGTCCATGGCGAGCACCTAAGAATAGCGCAAGACGATGT 948 Query 959 TGTAAAACACGTCGTGCCTTACCTCAAGAACCAGCCTGCGTCTATGAGTGAAGATTTGGA 1018 ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 949 TGTAAAATACGTCGCGCCTTACCTCAAGAACCAGCCTGTGTCTATGAGTGAAGATTTGGA 1008 Query 1019 GATACTGCATCTATGATTGA--GACTTCATTGTTATGCTCTCTTAGAATCAAATTTAAAA 1076 |||||||||||||||| ||| |||||||||||||||||||||||| || ||||| |||| Sbjct 1009 GATACTGCATCTATGAGTGAAAGACTTCATTGTTATGCTCTCTTAGGATTAAATT-AAAA 1067 Query 1077 GTGAAGAACTTTAGAGGCTCCTTTTTCTTAATCATAAATCCAAATAATTTCATCAT 1132 ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct 1068 GTGAAGAACTTTAGAGGCTACTTCTTCTTAATCATAAATCAAAATAATTTCATCAT 1123 > Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 Length=1030 Score = 568 bits (307), Expect = 5e-161 Identities = 743/941 (79%), Gaps = 80/941 (9%) Strand=Plus/Plus Query 117 TCCATGGAGAAGAGTTTCCAGA-AATCAGCTCTCCTTGTGACCTTG--ACTC-TCTTCTT 172 |||||||||||||||||||| | ||| |||||||||||||| ||| ||| ||||||| Sbjct 2 TCCATGGAGAAGAGTTTCCA-ACGATCTGCTCTCCTTGTGACTTTGTCTCTCTTCTTCTT 60 Query 173 C-T-T-CATTCCAGTTTCAATCTCGGTTCCATTCATTCTGTTTCATGGGATTAGAGATCA 229 | | | |||||| |||||| |||| ||||||||| |||||||||||||| || | | | | Sbjct 61 CTTCTCCATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCATGGGTTTGGTGGTGA 120 Query 230 ATGCTCCAATGGTGGAGTGAGCAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCT-CCC 288 |||||| ||| | ||| |||| ||| |||| |||||| ||||| ||| ||| ||| Sbjct 121 ATGCTCAAATAATAAAGTTAGCAACTTAACACAGTTCCTTATCAACCACTCCGGCTACCC 180 Query 289 ATGGATCTTGCTTAGAAATAGGAAATGGAGAGCAAGATTCGGTGACT-ATGCCGCTTACG 347 |||| ||||| |||||||||||||||||| ||||||||| || | |||||||||| | Sbjct 181 -TGGAACTTGCGTAGAAATAGGAAATGGAGTGCAAGATTCCTTG-TTCATGCCGCTTAGG 238 Query 348 CAACAAGCGAGTGTAGCGTGTGAGAAAGTTAAACAGATGAAGGATTTGAGTCAAGGCTAC 407 |||||||||||| |||| ||||||||| |||||||||||||||| ||||| |||| ||| Sbjct 239 CAACAAGCGAGTATAGCTTGTGAGAAAATTAAACAGATGAAGGAGCTGAGTGAAGGTTAC 298 Query 408 AACATTGTTGCACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGTGAC 467 |||||||||||| |||||||||||||||| || |||||||| |||||||||||||| ||| Sbjct 299 AACATTGTTGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGAC 358 Query 468 AATGCTCCTCCGGTCTTCAACTATATATCTTTAGGAGGTCCTCATGCTGGCATATCCGAC 527 |||||||| || ||| |||||||| | || |||||||| |||||||||||| | | | | Sbjct 359 AATGCTCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTG-C 417 Query 528 -ATTCCCAA---GTGTAATTCTACACTTTGCGA-GTTGCTGAAAACA------GC-G-G- 573 || ||||| ||||| ||| || |||| | | | ||||| || || | | Sbjct 418 AATCCCCAAGGGGTGTACCTCTCCATTTTG-TATGCTCCTGAAGGCAGTGTTTGCAGTGA 476 Query 574 TCTACACCGACTTCG-TACAAGATCATATTGCTCCAAGTGGTTATATCAAGATTCCTACA 632 ||||||||||| ||| | ||||| |||| |||||||||||||||| |||| | |||| Sbjct 477 TCTACACCGACCTCGCT-CAAGACCATACTGCTCCAAGTGGTTATGTCAAAAAACCTATG 535 Query 633 GATATA-AAAGATTACCTGGAACACTCCAAGTATCTGCCAAAGATCAACAACGAGAGACC 691 || ||| || |||| ||||||||||||||||||||||||||| | |||||||||||||| Sbjct 536 GAAATAGCAA-ATTATCTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGACC 594 Query 692 TAACGAAAGGAACACCACTTTTAAAGACCGGTTCACTAGCTTGCACAACTTGGTCCTTGT 751 | || ||||||||||||||||| ||||| |||||||| |||||||| || | Sbjct 595 T-------GG---ACCACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCAT 644 Query 752 CATGTTTGAG-GGTGATGCAGTAGTGATTCCTAA-AGAAAGTTCTTGGTTCGGATATTAC 809 |||| || || |||| || || || |||| || ||||| ||||||||||||||||||| Sbjct 645 CATG-TTCAGAAATGATACAATATTGGTTCC-AAGAGAAACTTCTTGGTTCGGATATTAC 702 Query 810 CCGGATGGAGC-T--TC--C-ACACCTCTTTTGTCTCC--------TC-A--A--CAG-- 848 |||| |||||| | || | |||||| ||||| |||| || | | ||| Sbjct 703 CCGGGTGGAGCTTCATCTTCAACACCTGTTTTGCCTCCTTAAAAGGTCAACCAGGCAGAA 762 Query 849 -------ACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACATTGGATGCTGCCAG 901 |||||||||||||||||||||||||||||||||||||| ||||||| ||| | Sbjct 763 ATCATCTACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACCTTGGATGATGCTGG 822 Query 902 AAAAGTTAAGTTTGTCAGTGTCCCTGGCG-AGCACCTA-AGAATAGC-GCAAGACGACGT 958 |||||| |||||| | ||||||||| ||| | ||| | ||| |||| | |||| ||| | Sbjct 823 AAAAGTGAAGTTTATTAGTGTCCCTTGCGGA-CACATCGAGA-TAGCTG-AAGAAGACCT 879 Query 959 TGTAAAACACGTCGTGCCTTACCTCAAGAACCAGCCTGCGT 999 ||| ||| |||| |||||||||||| ||||| || || ||| Sbjct 880 TGTTAAATACGTTGTGCCTTACCTCCAGAACGAGTCTACGT 920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50169758772 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5