BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17483.1 Length=934 Score E Sequences producing significant alignments: (Bits) Value Ahg493129 jgi|Araly1|493129|fgenesh2_kg.7__2562__AT4G17483.1 1404 0.0 Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 311 6e-84 > Ahg493129 jgi|Araly1|493129|fgenesh2_kg.7__2562__AT4G17483.1 Length=907 Score = 1404 bits (760), Expect = 0.0 Identities = 859/908 (95%), Gaps = 2/908 (0%) Strand=Plus/Plus Query 1 ATGGAGAAGTATTCCCGGCGGTCTATTCTCCTTTCCACGGTGGTCGCCGCCGTGTTATTC 60 |||||||||| || |||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 1 ATGGAGAAGTGTTTCCGGCGGTCTGTTCTCCTTTCCACGGTGATCGCCGCCATGTTATTC 60 Query 61 TCTTTAATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAA 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTTTATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAA 120 Query 121 TGTTCTGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCTCTCCTGGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGTTCTGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCTCTCCTGGC 180 Query 181 TAT-TGCTTAGAAATAGGAAATGGAGAAAAGGACTCATGGTTCATGCCACTAAGAAAGCA 239 | | ||||||||||||||||| ||||||||||||||||||||||||||| | | |||||| Sbjct 181 T-TCTGCTTAGAAATAGGAAACGGAGAAAAGGACTCATGGTTCATGCCATTGATAAAGCA 239 Query 240 AACAAGTGTAGCGTGTGAGAAAGTGAAAGCGATGAAAGTGTTAAGTCAAGGTTACAACAT 299 ||| ||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||||| Sbjct 240 AACTAGTTTAGCGTGTGAGAAAGTGAAAACGATGAAAGAGTTGAGTCAAGGTTACAACAT 299 Query 300 TGTTGCAGAGTCTCAAGGAAACTTAGTTGCTAGAGGACTAATCGAGTTCTGCGATAATGC 359 ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 300 TGTCGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGATAATGC 359 Query 360 TCCTCCTGTTATAAACTATATCTCTTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCCC 419 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 TCCTCCTGTCATTAACTATATCTCCTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCCC 419 Query 420 TAAGTGTAATTCTGGCCCAATATGTGCGATAGGTGAAGCTTTGTTGAAGTTAGAGGTCTA 479 |||||| |||||| |||||||||| || ||||||||| ||||||||||||||||||| Sbjct 420 CAAGTGTGCTTCTGGTCCAATATGTGATATTGGTGAAGCTATGTTGAAGTTAGAGGTCTA 479 Query 480 TACTGACTTCGTTCAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGGTGAAAT 539 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TACTGACTTCGTACAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGGTGAAAT 539 Query 540 TTCAAAGTATTTGGAGCACTCCAAGTATCTACCAAAGCTTAACAATGAGAGACCTGACGA 599 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 540 CTCAAAGTATTTGGAACACTCAAAGTATCTACCAAAGGTTAACAATGAGAGACCTGACGA 599 Query 600 AAGAAACTCTACTTTCAAAGACCGATTCACTAACTTACACAATTTAGTTCTTGTCATGTT 659 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 600 AAGAAACTCCACTTTCAAAGACCGATTCACTAAGTTACACAACTTAGTTCTTGTCATGTT 659 Query 660 CGAGAGCGATACAATGTTAATCCCTAAAGAAACTGCATGGTTTGGTTATTATGAAGATGA 719 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 CGAGAGCGATACAACATTAATCCCTAAAGAAACTGCATGGTTTGGATATTATGAAGATGA 719 Query 720 AGGATTCGATACCCTTTTGTCAGCTCAACAGACAAAGTTGTACAGAGAAGATTGGATTGG 779 |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 720 AGGATTTGATACTCTTTTGTCAACTCAACAGACAAAGTTGTACAGAGAAGATTGGATTGG 779 Query 780 TCTGAAAGCATTGGATGCTGCCGGAAAAGTGAAGTTTGAAAGTGTGTTAGGGGACCACCT 839 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 780 TCTGAAAGCATTGGATGTTGCCGGAAAAGTGAAGTTTGAAAGTGTGTTAGGGGACCATCT 839 Query 840 CAGTATATCGGATGAGGAGGTTGTGGAATTTGTTGTGCCTTACTTAATGCAAAACTGTAT 899 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 840 CAGTATATCGGATGAGGAGGTTGTGGAATATGTTGTGCCTTACTTAATGCAAAGCTGTAT 899 Query 900 GTGAATTT 907 |||||||| Sbjct 900 GTGAATTT 907 > Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 Length=1030 Score = 311 bits (168), Expect = 6e-84 Identities = 503/660 (76%), Gaps = 42/660 (6%) Strand=Plus/Plus Query 67 ATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAATGTTC- 125 |||||||||||| ||||| |||| ||| | || ||||| || |||| | | |||| || Sbjct 68 ATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCATGGGTTTGGTGGTGAATGCTCA 127 Query 126 --TGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCT-CTCCTGGCTA 182 | | |||||| ||||| || || |||| | ||||| ||| |||| | ||||| | Sbjct 128 AATAATAAAGTTAGCAACTTAACACAGTTCCTTATCAACCACTCCGGCTAC-CCTGG-AA 185 Query 183 -TTGCTTAGAAATAGGAAATGGAG-AAAAGGACTCATGGTTCATGCCAC-TAAGAAAGCA 239 |||| |||||||||||||||||| || || || | ||||||||| | || | || || Sbjct 186 CTTGCGTAGAAATAGGAAATGGAGTGCAA-GATTCCTTGTTCATGCCGCTTAGGCAA-CA 243 Query 240 AACAAGTGTAGCGTGTGAGAAAGTGAAAGC-GATGAAAGTGTTAAGTCAAGGTTACAACA 298 | | ||| |||| ||||||||| | ||| | |||||| | | | ||| |||||||||||| Sbjct 244 AGCGAGTATAGCTTGTGAGAAAATTAAA-CAGATGAAGGAGCTGAGTGAAGGTTACAACA 302 Query 299 TTGTTGCAGAGTCTCAAGGAAACTTAGTTGCTAGAGGACTAATCGAGTTCTGCGATAATG 358 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 303 TTGTTGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGACAATG 362 Query 359 CTCCTCCTGTTATAAACTATATCTCTTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCC 418 |||| || || || |||||| |||| |||||||| |||||||||||| | || ||||| Sbjct 363 CTCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTGCAATCC 422 Query 419 CTAAG---TGTAATTCTGGCCCAATATGTGCGATAGGTGAAG-CTTTGTT-GAAGTTAGA 473 | ||| |||| ||| || | | ||| | | ||||| | |||| | ||| || Sbjct 423 CCAAGGGGTGTACCTCT--CC-ATTTTGTATGCTCC-TGAAGGCAGTGTTTGCAGT--GA 476 Query 474 GGTCTATACTGACTTCGTTCAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGG 533 |||| || ||| ||| |||||| |||| |||||| ||||||||| |||| | ||| Sbjct 477 --TCTACACCGACCTCGCTCAAGACCATACTGCTCCAAGTGGTTATGTCAAAAAACCTA- 533 Query 534 TG-AAATTTCAAAGTATTTGGAGCACTCCAAGTATCTACCAAAGCTTAACAATGAGAGAC 592 || |||| |||| ||| |||| |||||||||||||| |||||||| ||||| ||||||| Sbjct 534 TGGAAATAGCAAATTATCTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGAC 593 Query 593 CTGACGAAAGAAACTCTACTTTCAAAGACCGATTCACTAACTTACACAATTTAGTTCTTG 652 ||| || | | ||||| |||||||| ||||| | ||| || || || ||||| Sbjct 594 CTG--GA------C-C-ACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCA 643 Query 653 TCATGTTC-GAGAGCGATACAATGTTAATCCCTAA-AGAAACTGCATGGTTTGGTTATTA 710 |||||||| || | |||||||| || | || || ||||||| | ||||| || ||||| Sbjct 644 TCATGTTCAGAAAT-GATACAATATTGGTTCC-AAGAGAAACTTCTTGGTTCGGATATTA 701 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34653731553 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5