BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17486.1 Length=1084 Score E Sequences producing significant alignments: (Bits) Value Ahg493128 jgi|Araly1|493128|fgenesh2_kg.7__2561__AT4G17486.1 1293 0.0 Ahg494250 jgi|Araly1|494250|fgenesh2_kg.8__66__AT5G47310.1 529 2e-149 > Ahg493128 jgi|Araly1|493128|fgenesh2_kg.7__2561__AT4G17486.1 Length=1019 Score = 1293 bits (700), Expect = 0.0 Identities = 768/801 (96%), Gaps = 3/801 (0%) Strand=Plus/Plus Query 26 CGATCATTTTTGCAGTCTCTC-TCCCAACCAATCCCATTCTGCTC-GACTCTCATTGTTG 83 |||||||||||||||| |||| | | |||||||||| |||| ||| | | | | ||||| Sbjct 1 CGATCATTTTTGCAGTGTCTCTTACAAACCAATCCC-TTCTTCTCAGTTTTTTAGTGTTG 59 Query 84 CAGAGGTTTAGGAAGAAAGGAATGGTTCGATCGTGACTTTGAATTGGGATATTGTGTGTA 143 |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 60 CAGAGGTTTAGGAAGAAAGGAATGATTCGATCGTGACTTTGAATTGGGATTTTGTGTGTA 119 Query 144 AAATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGAGAGGGATGAGAGCA 203 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 120 AAATGTGGGTGCCTACATTGAGCTCAAGCTCATCTTCAAGTGATGAGAGGGAAGAGAGCA 179 Query 204 GTGGAGAAGCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACA 263 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTGGAGAAGCCGGGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACA 239 Query 264 ATTACCTTTATTGGTTTGGGATTGGCATTTTCCATTCTGGTATTGAGGCTCATAATTTGG 323 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 240 ATTACCTTTATTGGTTTGGGATTGGCATATTCCATTCTGGAATTGAGGCTCATAATTTGG 299 Query 324 AATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGA 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGA 359 Query 384 ACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTACCAGCATGTCCCGTT 443 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 360 GCTGTCCAGGTTTCATCTTTAGACGGTCGGTTTTATTGGGAACTACCAGCATGTCTCGTT 419 Query 444 CAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGGTGACACTTACCATT 503 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 420 CAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAATACCATGGTGACACTTACCATT 479 Query 504 TGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAGCTAACAGGAAAGC 563 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 480 TGATTGCCAAGAACTGTAACCATTTTACTGAAGAAGTATGCTTGCAGCTTACAGGAAAGC 539 Query 564 CTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTGTAATTGTCTTCTGC 623 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 540 CTATTCCAGGATGGATTAATCGGCTAGCCCGTGTAGGTTCGTTCTGTAATTGTCTTCTGC 599 Query 624 CAGAAAGCATTCAGCTTACAGCTGTTAGTGCTCTTCCCGAACGCCTTGAATTCTCCGATG 683 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 600 CAGAAAGCATTCAGCTTACAGCTGTTAGTGTTCTTCCCGAACGCCTTGAATTCTCCGATG 659 Query 684 AGGATGAATCAAACTCAGAGGCATCTTCTGTGTCAGATGAAGAAGGATCAGAGCAGCATC 743 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 660 AGGAGGAATCAAACTCAGAGGCATCTTCTGTGTCGGATGAAGAAGGATCAGAGCAGCATC 719 Query 744 TCATAAATGTAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCA 803 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TCATAAATGCAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCA 779 Query 804 GAGAGGAGATCCCCTGAGAAA 824 ||||||||||||||||||||| Sbjct 780 GAGAGGAGATCCCCTGAGAAA 800 Score = 289 bits (156), Expect = 4e-77 Identities = 185/198 (93%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 887 AGTGTGGTGTGCCCATGGAAGCTGAAAGGGAGTAAGTTATATATCTCGTTTTGTCACCTT 946 ||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 827 AGTGT-GTGTGCCCATGGAAGCTGAAAGGGAGTAAG-T-GATATCTCCTTTTGTCACCTT 883 Query 947 AGTGCTGCGTTGGTTCTGTCGGAAATTCGATTTGGTATTCTTCTCATCATTTTAGGAATG 1006 | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 AATGCTGCGTTTCTTCTGTCGGAAATTCGATTTGGTATTCTTCTCATCATTTTAGGAATG 943 Query 1007 TAAAAACGGATTCCCGGATTCATTTTAATCAGAC-AACCCTTTGGCAGTAAAAATCTAAA 1065 |||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||| || Sbjct 944 TAAAAACGGATTCC-GGATTTATTTTAATCAGACCAACC-TTTGGCAGTAAAAATCTGAA 1001 Query 1066 GATTTCTCCATATTTTCC 1083 |||||||||||||||||| Sbjct 1002 GATTTCTCCATATTTTCC 1019 > Ahg494250 jgi|Araly1|494250|fgenesh2_kg.8__66__AT5G47310.1 Length=1066 Score = 529 bits (286), Expect = 2e-149 Identities = 560/688 (81%), Gaps = 36/688 (5%) Strand=Plus/Plus Query 139 GTGTAAAATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGA-GAGG--GA 195 |||||||||| |||| | | ||||||||||||| ||||||| |||| || ||| || Sbjct 70 GTGTAAAATGCGGGTACTTGGTTTGAGCTCAAGCTTATGTTCAGGTGAGGACAAGGAAGA 129 Query 196 TG-AGAG-C-AGTGGAGAA-GCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAA 251 | |||| | | ||||||| || | || || || ||||||||||| ||||||||||| | Sbjct 130 AGAAGAGACAACTGGAGAAGGCTG-TCTCACTCCTGTTTATCTCAACGTCTATGATCTGA 188 Query 252 CGCCTGTCAACAATTACCTTTATTGGTTTGGGATTGGCAT-TTTCCATTCTGGTATTGAG 310 | |||||||||||||| || |||||||| || ||||||| ||| || ||||| |||||| Sbjct 189 CTCCTGTCAACAATTATCTCTATTGGTTCGGTCTTGGCATATTT-CACTCTGGCATTGAG 247 Query 311 GCTCATAATTTGGAATATTGCTATGGAGCTCACGAGTA-TCCAACAAGTGGGGTATATGA 369 |||||| ||| |||||| | ||||| ||||| ||||| || | | |||||||||| ||| Sbjct 248 GCTCATGGTTTCGAATATGGATATGGGGCTCATGAGTATTCGAGC-AGTGGGGTATTTGA 306 Query 370 GGTGGAACCTAGGAACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTAC 429 ||| |||||||||| ||||||||| ||||||||||| || || ||||| ||||||| || Sbjct 307 GGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGAACCAC 366 Query 430 CAGCATGTCCCGTTCAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGG 489 ||||||||| || |||||||||||||| | ||||||||||||||| ||||| || ||||| Sbjct 367 CAGCATGTCTCGCTCAGATTTCCGCTCTTTCATGGAGAAGCTTTCGAGAAAATATCATGG 426 Query 490 TGACACTTACCATTTGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCA 549 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 427 GGACACATACCATTTAATCGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCA 486 Query 550 GCTAACAGGAAAGCCTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTG 609 | ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| Sbjct 487 GGTAACAGGAAAGCCTATTCCCGGATGGATTAATCGGATGGCCCGAGTAGGTTCTTTCTG 546 Query 610 TAATTGTCTTCTGCCAGAAAGCATTCAGCT-TACAGCTGTTAGTGCTCTTCCCGAACGCC 668 ||| ||| | || ||||||||||| ||||| | || |||||| | | | |||||| ||| Sbjct 547 TAACTGTATCCTTCCAGAAAGCATACAGCTCT-CATCTGTTAAT-CA-T-CCCGAA-GCC 601 Query 669 TT-GAATTCTCCGATGAG---GATGAATCA-AAC--TCAGAGGCATCTTCTGTGTCAGAT 721 | || ||||| ||||| |||| |||| || |||| |||||||| || ||| || Sbjct 602 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCCGTATCATAT 661 Query 722 GAA---GA---AG--G-ATCAGAGCAGCATCTCATAA-ATGTAGCAGACAGAGAGATTGT 771 ||| || || | ||| || || |||||||||| | | | || |||| || |||| Sbjct 662 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACA-GCACCAAACAGCGACATTGC 720 Query 772 GTATCTACAAAACAAACCAGTGCGACTT 799 |||||||||| ||| ||||||| ||||| Sbjct 721 GTATCTACAAGACAGACCAGTGAGACTT 748 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40372169103 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5