BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17550.1 Length=1925 Score E Sequences producing significant alignments: (Bits) Value Ahg890460 jgi|Araly1|890460|Al_scaffold_0007_2446 883 0.0 Ahg493122 jgi|Araly1|493122|fgenesh2_kg.7__2555__AT4G17540.1 276 5e-73 Ahg937481 jgi|Araly1|937481|scaffold_501672.1 209 5e-53 > Ahg890460 jgi|Araly1|890460|Al_scaffold_0007_2446 Length=1008 Score = 883 bits (478), Expect = 0.0 Identities = 535/562 (95%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 1075 ACTATTGGTGGAGAGTACGTGTCTGTGAAAACAGCAGGGAATCTCTCCACACTATTTGAT 1134 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 451 ACTATTGGTGGAGAGTACGTGTCTGTGAAAACAGCAGGAAATCTCTCCACGCTATTTGAT 510 Query 1135 GTTGGAGGCATTGTAGGAGGGATTCTTTGTGGTTACATTTCAGACAAATTCAAAGCAAGG 1194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 GTTGGAGGCATTGTAGGAGGGATTCTTTGTGGTTACATTTCAGACAAATTCAAAGCAAGG 570 Query 1195 GCTACAACTGCAGCTGCATTCATGTACGCTGCGATTCCGGCAATGCTTGTGTACCATTCC 1254 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 571 GCTACAACTGCAGCAGCATTCATGTACGCTGCAATTCCAGCAATGCTTGTGTACCATTCC 630 Query 1255 TATGGAGGTGTCTCTCAGACAGTCAACATCCTCCTCATGATGGTTGCTGGTTTGTTTGTC 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 TATGGAGGTGTCTCTCAGACAGTCAACATCCTCCTCATGATGGTTGCTGGTTTGTTTGTC 690 Query 1315 AATGGTCCTTATGCACTCATCACAACCGCAGTCTCTGCGGATCTGGGAACGCACAAGTCT 1374 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 691 AATGGTCCTTATGCACTCATCACAACCGCAGTCTCAGCGGATCTTGGAACCCACAAGTCT 750 Query 1375 TTACAAGGCGATTCAAGGGCGCTTGCGACTGTTACTGCTATCATTGACGGGACTGGATCT 1434 |||||||||||||||||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct 751 TTACAAGGCGATTCAAGGGCGCTTGCAACTGTGACTGCAATTATTGATGGTACTGGATCT 810 Query 1435 GCCGGTGCGGCTTTAGGTCCGCTTTTGACAGGGTTTCTTTCTACTC-TGGGTTGGCAAGC 1493 || |||||||||||||||||||||||||||||||||||||| || | |||| |||||||| Sbjct 811 GCTGGTGCGGCTTTAGGTCCGCTTTTGACAGGGTTTCTTTCGAC-CATGGGCTGGCAAGC 869 Query 1494 TGTGTTCTATATGTTGGTCGTTGGAGCTCTCTGTGCTGGTTTGCTTTTGACCCGTCTGGT 1553 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 870 TGTGTTCTATATGTTAGTCGTTGGAGCTCTTTGTGCTGGTTTGCTTTTGACCCGTCTGGT 929 Query 1554 TATTGCTGAAATTAGAGAGAAACTTGGATATGTTGATGAAGAAGTTCCTGCTTCTGAACC 1613 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 930 TATTGCTGAAATTAGAGAGAAACTTGGATATGTTGATGAAG---TTCCTGCGTCTGAACC 986 Query 1614 ACTGTTAACCGATAGAAGATGA 1635 ||||||||| || ||||||||| Sbjct 987 ACTGTTAACAGACAGAAGATGA 1008 Score = 719 bits (389), Expect = 0.0 Identities = 438/460 (95%), Gaps = 9/460 (2%) Strand=Plus/Plus Query 1 ATGGCGATGAATTCGAAGAGGAAAACACCACCTGGGATTGCGCTTCTGAGGAGAGTCAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1 ATGGCGATGAATTCGAAGAGGAAAACACCACCTGGGATTGCGCTTCTGAGAAGAGCCAGA 60 Query 61 GGAAGAAATTGGAGTCCAAAGACGTTTCGGTACGCGATTTTGTTTATTACTTTCATCGCA 120 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 GGAAGAAATTGGAGTCCAAAGACGTTTCGGTACGCGATTTTGTTGATTACTTTCATCGCG 120 Query 121 TATGCTTGTTACCATGCTTCTCGTAAACCAAGCAGCATAGTGAAGAGCGTTTTACACCCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TATGCTTGTTACCATGCTTCTCGTAAACCAAGCAGCATAGTGAAGAGCGTTTTACACCCA 180 Query 181 GACTCAAGCACTAAGCCACCTCAAGAACATAACAGCGACAAAATTTATCCTTGGCCTATG 240 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 181 GACTCAAGCACTAAGCCACCTCAAGAACACAACAGCAACAAAATTTATCCTTGGCCTATG 240 Query 241 GGTAACGTGTTTGTGAAGAGAGAAATTGGTGATATAGATGAGGTTTTGTTGCATCGTAAG 300 || | |||||||||||||||||||||| || || | | |||||||||||||||| Sbjct 241 GGCAGGGTGTTTGTGAAGAGAGAAATTG---AT---GA-G-G-TTTTGTTGCATCGTAAC 291 Query 301 TCTAAAGGATGGGAACCGTTTAATGGGAAAGATGGGACGTCTAGGTTGGGAGAGATTGAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TCTAAAGGATGGGAACCGTTTAATGGGAAAGATGGGACGTCTAGGTTGGGAGAGATTGAT 351 Query 361 GTGGCGTTTCTTGCTTGTTACTCTATAGGAATGTATGTTGCTGGTCATTTGGGTGATAGT 420 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 352 GTAGCGTTTCTTGCTTGTTACTCTATAGGAATGTATGTTGCTGGACATTTGGGTGATAGT 411 Query 421 TTGGATCTGAGATTGTTTCTGACTTGGGGAATGATTGGGA 460 |||||||||||||||||||| ||||||||||||||||||| Sbjct 412 TTGGATCTGAGATTGTTTCTTACTTGGGGAATGATTGGGA 451 > Ahg493122 jgi|Araly1|493122|fgenesh2_kg.7__2555__AT4G17540.1 Length=1079 Score = 276 bits (149), Expect = 5e-73 Identities = 173/184 (94%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 1743 GTATTCTGTGTTTTGTCTGATATTGTGAAAAATTTCTTT-ATCTCATAACAAATGAAGGA 1801 ||||||| ||||||||| ||||||||| | ||| ||| |||||||||||||||||||| Sbjct 1079 GTATTCTATGTTTTGTCAGATATTGTG--ATTTTTTTTTCATCTCATAACAAATGAAGGA 1022 Query 1802 ATTGGCTTACAGCTTTCTTCCTCTATTTCTTCTCTGTTTTCTACGACACTCAAAGCAATC 1861 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1021 ATTGGCTTACAGCTTTCTTCCTCTATTTCTTCTCTGTTTTCTACGACACTCGAAGCAATC 962 Query 1862 TTTGCATGGTGGTGTTTCGTAATTGTAAGAGGAAACTAATTTCAGTTTTTCGGGTGAAAC 1921 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 961 TTTGCATGGTGGTGTTTCGTACTTGTAAGAGGAAACTAATTTGAGTTTTTCGGGTGAAAC 902 Query 1922 TTTG 1925 |||| Sbjct 901 TTTG 898 > Ahg937481 jgi|Araly1|937481|scaffold_501672.1 Length=1613 Score = 209 bits (113), Expect = 5e-53 Identities = 311/403 (77%), Gaps = 28/403 (7%) Strand=Plus/Plus Query 352 GAGATTGATGTGGCGTTTCTTGCTTG-TTACTCTATAGGAATGTATGTTGCTGGTCATTT 410 ||||| ||||| ||||||||||| | |||| || | ||||||||| ||||||| ||||| Sbjct 337 GAGATCGATGTTGCGTTTCTTGC-GGTTTACGCTTTCGGAATGTATTTTGCTGGACATTT 395 Query 411 GGGTGATAGTTTGGATCTGA-GATTGTTTC-TGACTTG-GGGAATGATTGGGAGTGGGTT 467 ||| ||||| || |||| | || | ||| |||| | |||||||| || | ||| || Sbjct 396 GGGAGATAGGATGAATCTTAGGA-T-CTTCTTGAC-AGTTGGAATGATAGGAACTGGATT 452 Query 468 CTTT-GTTGGGT-TGTTTGGTA-TGGGTTATTTCTGG--AACATTCAT-GCGTTTTGGTT 521 ||| || | ||||||| | | ||||| || || || |||||| || |||| | Sbjct 453 GTTTACTT--CTCTGTTTGG-AGTTGGTTA-TT-GGGCTAATATTCATAGC-TTTT-ACT 505 Query 522 CTTT-TTGGTTATGCAAATGGCGGCTGGGTTGTTTCAGGCGACAGGATGGCCATCTGTTG 580 ||| ||| ||||||||||| |||||| |||||||| | | || |||||||| |||| Sbjct 506 ATTTCTTGATTATGCAAATGTTGGCTGGATTGTTTCAATCTTCGGGTTGGCCATCGGTTG 565 Query 581 TGGCTGTTGTTGGGAATTGGTTTGGGAA-AAGGAAGAGAGGTCTT-ATAATGGGGATTTG 638 | ||||| ||||| || |||||| || || |||||||||| || || ||||| || || Sbjct 566 TTGCTGTGGTTGGAAACTGGTTTAACAAGAA-GAAGAGAGGT-TTGATTATGGGAATATG 623 Query 639 GAATGCTCATACTTCTGTTGGGAACATTTGTGGTTCTTTAATTGCTGCTGGTGTTCTTGA 698 |||||||||||||||||||||||||||| ||| || || || ||||||| | | |||| Sbjct 624 GAATGCTCATACTTCTGTTGGGAACATTACTGGCTCGTTGATCGCTGCTGCTATG-TTGA 682 Query 699 -ATATGGTTGGGGATGGTCTTTTATAGCTCCTGGTTTTGTCAT 740 |||||||||||||||||||||| | | ||||||| || |||| Sbjct 683 GATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGTGTTATCAT 725 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72333375255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5