BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17560.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946470 jgi|Araly1|946470|scaffold_702699.1 1112 0.0
Ahg494259 jgi|Araly1|494259|fgenesh2_kg.8__75__AT5G47190.1 501 5e-141
> Ahg946470 jgi|Araly1|946470|scaffold_702699.1
Length=718
Score = 1112 bits (602), Expect = 0.0
Identities = 684/723 (95%), Gaps = 7/723 (1%)
Strand=Plus/Plus
Query 42 GTAACTGAGAGTTTGCTGCAGCTATGGCGATGAGCTTTCATCGTCTTCCTCAGGCATTGC 101
||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GTAACTGAGAG-TT--TGAAGCTATGGCGACGAGCTTTCATCGTCTTCCTCAGGCATTGC 57
Query 102 ATATGATACCCAGAAACCCTACGCAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTAT 161
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 58 ATATGATACCGAGAAACCCTTCTCAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTAT 117
Query 162 CGTGTGCACCATCGATGGATTCTCGTATATCAGTTTCTAGGCTTTCTCTGAATCATCCCG 221
| || ||||||||| || |||||||| |||||||||||||||| |||||||||||| |||
Sbjct 118 CATGCGCACCATCGGTGAATTCTCGTGTATCAGTTTCTAGGCTCTCTCTGAATCATTCCG 177
Query 222 GCTCGAAATTTGGGTTCTCACTCGATACTAGGGTGAGAAATGAGTTTATCGTTAGAGCAG 281
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 GCTCGAAATTTGGGTTCTCACTCGATACTAGGGTGAGAAATGAGTTTGTCGTTAGAGCAG 237
Query 282 AAGAAGGTAACACAGAAGCTGAATCTGAAGAATTTGTTGCTGAAATCGCTGATACGGAAG 341
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 AAGAAGGTAACACTGAAGCTGAATCTGAAGAGGCTGTTGCTGAAATCGCTGATACGGAAG 297
Query 342 GAAATGTAGAGGAAG-TGGTCGAAGCTAAACCTACA-AGAAAACCTAGGATCAAGCTCGG 399
| |||||||| |||| |||| |||||||||||| || |||||||| ||||||||||||||
Sbjct 298 GCAATGTAGAAGAAGTTGGT-GAAGCTAAACCT-CAGAGAAAACCGAGGATCAAGCTCGG 355
Query 400 AGATGTCATGGGGATACTGAACCAGAAAGCAATTGAGGTAGCAGAGAAAGTGAGACCTGT 459
||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||
Sbjct 356 AGATGTCATGGGGATACTGAATCAGAGAGCAATTGAGGTTTCAGAGAAAGTAAGACCTGT 415
Query 460 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 475
Query 520 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 535
Query 580 CATTCGTATTCGGAGAATTATTGCGGGTATCGGTGTTGAAATTGTGTTTCCCATATACTC 639
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 536 CATTCGTATTCGGAGAATTATTGCGGGTATTGGTGTTGAAATCGTGTTTCCCATATACTC 595
Query 640 TCCCAACATCAAAGAGATAAAAGTGGTGAGTCACAGGAAAGTAAGAAGAGCAAGGCTTTA 699
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 596 TCCCAACATCAAAGAGATAAAAGTGGTGAGTCACAGAAAAGTGAGAAGAGCAAGGCTTTA 655
Query 700 CTATCTGAGGGACAAGCTTCCTCGTCTGTCCACTTTCAAGTGAACACCATCCACCGTGCT 759
||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 656 CTATCTGAGAGACAAGCTTCCTCGTCTCTCCACTTTCAAGTGAAGACCATCCACCGTGCT 715
Query 760 GTG 762
|||
Sbjct 716 GTG 718
> Ahg494259 jgi|Araly1|494259|fgenesh2_kg.8__75__AT5G47190.1
Length=893
Score = 501 bits (271), Expect = 5e-141
Identities = 558/694 (80%), Gaps = 29/694 (4%)
Strand=Plus/Plus
Query 65 ATGGCGATGAGCTTTCATCGTCTTCCTCAGGCATTGCATATGATACCCAGAAACCCTACG 124
||||||| ||||| ||||| |||||||||| ||||||||||||| || |||| ||||||
Sbjct 38 ATGGCGACGAGCTCTCATCTTCTTCCTCAGACATTGCATATGATGCCGAGAATCCCTACT 97
Query 125 CAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTATCGTGTGCACCATCGATGGATTCT 184
|| ||||||||||||||| ||||||| ||||| | | ||| |||| || | ||
Sbjct 98 TTCTCGTCGAAGAATTTAGGGGTTTCTTCAATTCTACCACGAGCATCATCAAT-CA-ACT 155
Query 185 CGTATATCAGTT-TCTAGGCTTTCTCTGAATCATCCCGGCTCGAAATTTGGGTTC-TCAC 242
| | | | || || | | ||||| |||||||| | |||| || ||||| ||| ||
Sbjct 156 C--A-A-GA-TTATC-A-G-TTTCTATGAATCATTCTAGCTCCAATTTTGGTTTCGCCA- 206
Query 243 TCGATACTAGGGTGAGAA-ATGAGTTTATCGTTAGAGCAGAAGAAGGTAACACAGAAGCT 301
||||| | | | ||||| | ||||| |||| || ||| |||| | | | || |||| |
Sbjct 207 TCGATTCCAAGAAGAGAAGA-GAGTTGATCGCTAAAGCTGAAG-A-G-AGTACTGAAGGT 262
Query 302 GAATCTGAAGAATTTGTTGCTGAA-ATCGCTGATACGGAA--GGAA-ATG-TAGAGGAAG 356
||| |||| | | ||| || ||| | | ||| || ||| |||| || | | || |
Sbjct 263 GAAACTGAGGCAGTTG-TGGAGAATGTTGTTGAAACTGAAGGGGAAGCTGCT-GTGGCGG 320
Query 357 TGGTCGAAGCTAAACCTACAAGAAAACCTAGGA-TCAAGCTCGGAGATGTCATGGGGATA 415
|| ||||||||| || | || || | | || |||||||||||||| ||||||| |||
Sbjct 321 AGGAGGAAGCTAAAACTCCGAGGAAGGCGA-GAGTCAAGCTCGGAGATATCATGGGAATA 379
Query 416 CTGAACCAGAAAGCAATTGAGGTAGCAGAGAAAGTGAGACCTGTTCCAGAAATCAGGACA 475
||||| ||||||| |||||||| ||||||||||| ||||| ||||| | | | ||||||
Sbjct 380 TTGAACAAGAAAGCTATTGAGGTTGCAGAGAAAGTAAGACCGGTTCCTGGACTTAGGACA 439
Query 476 GGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTAC 535
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 440 GGGGATATTGTAGAAATCAAGCTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTAC 499
Query 536 AAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTACCATTCGTATTCGGAGA 595
||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 500 AAAGGTATTGTGATGTCTAGACAAAATGCAGGCATCCACACTACTATTCGTATCCGGAGG 559
Query 596 ATTATTGCGGGTATCGGTGTTGAAATTGTGTTTCCCATATACTCTCCCAACATCAAAG-A 654
|||||||| || || ||||||||||| || ||||| ||||||||||||||||| |||| |
Sbjct 560 ATTATTGCAGGCATTGGTGTTGAAATCGTCTTTCCTATATACTCTCCCAACAT-AAAGGA 618
Query 655 GATAAAAGTGGTGAGTCACAGGAAAGTAAGAAGAGCAAGGCTTTACTATCTGAGGGACAA 714
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 619 GATAAAAGTGGTAAGTCACAGGAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAA 678
Query 715 GCTTCCTCGTCTGTCCACTTTCAAGTGAACACCA 748
||||||||||| || ||||| || ||| |||||
Sbjct 679 ACTTCCTCGTCTCTCAACTTTTAAATGATCACCA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5