BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17730.2
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493104 jgi|Araly1|493104|fgenesh2_kg.7__2537__AT4G17730.1 1408 0.0
> Ahg493104 jgi|Araly1|493104|fgenesh2_kg.7__2537__AT4G17730.1
Length=1344
Score = 1408 bits (762), Expect = 0.0
Identities = 948/1032 (92%), Gaps = 36/1032 (3%)
Strand=Plus/Plus
Query 1 TTTTTCCGTTCATACAGGTAATGTGACATTTCACGTTTTGCTCAATCTCTCTCTCCGCGG 60
||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 TTTTTTCGTTCGTACAGGTAATGTGACATTTCACGTTTTG--C--GCTCTCTCTCCGCGA 56
Query 61 TTCACGTTTTTTCTCAATCTGTCCG-GA-----GAGAGAGA-AACTCACCGGGGAATCTT 113
|||||| ||| |||||||||||||| || |||||||| |||||||||| ||||| |
Sbjct 57 TTCACG-TTTCTCTCAATCTGTCCGTGACTCCGGAGAGAGAGAACTCACCGGAGAATC-T 114
Query 114 G-AAATCACCATCACATCCTCTCTTCCCTCGATCTCCGTTATCGACTGTAAATCGAA-TT 171
| ||||||| |||| | || || ||| || |||| ||||| || || |||||||| ||
Sbjct 115 GAAAATCACTGTCACGTTCTTTCCTCCGTCCATCTTCGTTACCG--TG-AAATCGAATTT 171
Query 172 TT-G-TTGTTGCTTTGTTTTCTTGGGCGAATAAAAGAGGATAA-TTTAGTGGCGGGGTTT 228
|| | || ||||| ||||||||| || |||||||||||||||| |||||||| ||| |||
Sbjct 172 TTCGATT-TTGCTCTGTTTTCTT-GG-GAATAAAAGAGGATAATTTTAGTGGTGGGTTTT 228
Query 229 TCGAGAAAGAGAGAGAAAGAATGAGTTTTCAAGATTTAGAGGCGGGAAGAGGAAGATCAT 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 229 TCGAGAAAGAGAGAGAAAGAATGAGTTTTCAAGATTTAGAAGCGGGAAGAGGAAGATCAT 288
Query 289 TAGCTTCTTCAAGGAACATCAATGGTGGTGGTAGTAGACAAGACACGACTCAAGATGTTG 348
|||||||||||||||||| |||||||||| | ||||||||||||| ||||||| |||||
Sbjct 289 TAGCTTCTTCAAGGAACACCAATGGTGGT-G--GTAGACAAGACACCACTCAAGCTGTTG 345
Query 349 CTTCTGGTATATTTCAGATCAATACAAGTGTTTCCACTTTCCATCGTCTTGTCAATACTC 408
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 346 CTTCTGGTATATTTCAGATCAACACAAGTGTTTCCACTTTCCATCGTCTTGTCAACACTC 405
Query 409 TTGGTACTCCTAAAGATACGCCTGAGC-TCAGAGAGAAGCTGCATAAGACAAGATTATAT 467
|||||||||||||||| || ||||||| || ||||||||||||| |||||||||||| ||
Sbjct 406 TTGGTACTCCTAAAGACACACCTGAGCTTC-GAGAGAAGCTGCACAAGACAAGATTACAT 464
Query 468 ATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCAT 527
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATTGGACAGCTAGTGAGAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCAT 524
Query 528 CAAAGAGGTGTAAATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CAAAGAGGTGTAAATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAA 584
Query 588 GCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATAT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATAT 644
Query 648 GCTCCTCTTGTCCACAAGCCATCTCTTCCCTCAAGCTACA-C-ATC-CAGTGAGATAGAT 704
||||||||||||||||||||||||||||||||||| || | | | | || | |||| |||
Sbjct 645 GCTCCTCTTGTCCACAAGCCATCTCTTCCCTCAAGATATAGCTA-CACAAT-AGAT-GAT 701
Query 705 GTGAATGGAGATAAGCATCCAGAGCAGCGTGCCCTTCTTGTGGAATCAAAAAGACAAGAA 764
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 702 GTGAATGGAGATAAGCAGCCAGAGCAGCGGGCCCTTCTTGTGGAATCAAAAAGACAAGAA 761
Query 765 CTTGTACTGTTGGACAATGAGATTGCGTTCAATGAGGCTGTTATTGAGGAAAGAGAGCAA 824
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 762 CTTGTACTCTTGGACAATGAGATTGCGTTCAATGAGGCTATTATTGAGGAAAGAGAGCAA 821
Query 825 GGGATACAAGAAATTCAGCAGCAAATTGGCGAGGTGCACGAGATCTTCAAAGACTTGGCA 884
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 822 GGGATACAAGAAATCCAGCAGCAAATTGGCGAGGTGCACGAAATCTTCAAAGACTTGGCA 881
Query 885 GTGTTGGTGCACGATCAAGGAAACATGATAGATGATATTGGTACTCACATCGATAACTCT 944
|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 882 GTGTTGGTACACGATCAAGGAACCATGATTGATGATATTGGTACTCACATCGATAACTCC 941
Query 945 TACGCTGCAACTGCCCAAGGAAAATCCCATCTCGTAAG-GCATCAAAGACACAAAGATCA 1003
|||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||
Sbjct 942 TACGCTGCAACTGCTCAAGGAAAATCCCATCTCGCAAAAGCCTCAAAGACACAAAGATCA 1001
Query 1004 AATTCTTCTCTG 1015
||||||||||||
Sbjct 1002 AATTCTTCTCTG 1013
Score = 230 bits (124), Expect = 3e-59
Identities = 168/187 (90%), Gaps = 11/187 (6%)
Strand=Plus/Plus
Query 1013 CTGTTTGATTTCCCCAAGCTCATAAAAGCATGGACAAGTGCTTCATCATCAATCAAGAAG 1072
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1075 CTGTTTGATTTACCCAAGCTCATAAAAGTATGGACAAGTGATTCATCATCAATCAAGAAG 1134
Query 1073 CATCAATGAGTATATGTTTGTCA---C--GACTCTCTTTGTTCCTACAATTTAGTCTGTT 1127
||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||
Sbjct 1135 CATCAATGAGTATATGTTTGTCATTTCACGGCTCTCTTTGTTCCTACCATTTAGTCTGTT 1194
Query 1128 GGACTATTGGTCTCTTGTTT-CTTGTTATCGAGT--A-TATA--GAGTAGTTCACTTTGG 1181
||||||||||||||| |||| | ||||||||||| | |||| ||||||||| ||||||
Sbjct 1195 GGACTATTGGTCTCTCGTTTTCCTGTTATCGAGTTGAGTATATAGAGTAGTTCGCTTTGG 1254
Query 1182 TTTGATT 1188
|||||||
Sbjct 1255 TTTGATT 1261
Score = 108 bits (58), Expect = 1e-22
Identities = 78/87 (90%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 1238 TTGTCTCTGTAATATAACTTGGTT-C-TGAAGGAAAATCCTCTGTTTGTGTTCTTAAATG 1295
||||||||||||||| | || ||| | | | |||||||||||||||||||||||||||||
Sbjct 1260 TTGTCTCTGTAATAT-ATTTTGTTGCAT-AGGGAAAATCCTCTGTTTGTGTTCTTAAATG 1317
Query 1296 TGAAATTTCTGGTTTCGATTAGCTAAA 1322
||||||| |||||||||||||| ||||
Sbjct 1318 TGAAATTCCTGGTTTCGATTAGTTAAA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5