BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18010.1 Length=2444 Score E Sequences producing significant alignments: (Bits) Value Ahg946406 jgi|Araly1|946406|scaffold_702635.1 3193 0.0 > Ahg946406 jgi|Araly1|946406|scaffold_702635.1 Length=1984 Score = 3193 bits (1729), Expect = 0.0 Identities = 1896/1978 (96%), Gaps = 6/1978 (0%) Strand=Plus/Plus Query 300 TCTTTTTCTGAGATCTAAGAAGATGAAAACAAGACGTGGGAAACGTCCTGAGAGGTTTTG 359 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTTATCTGAGATCTGAGAAGATGAAAACAAGACGTGGGAAACGTCCTGAGAGGTTTTG 60 Query 360 GCCATCAATTGTGATGAATAAATGGTTAAACAGAAAACCTAAAGTTTACGATTTTAGCGA 419 ||| || |||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct 61 GCCTTCGATTGTGATGAATAAATGGTTGAACATAAAACCTAAAGTTTACGACTTTAGCGA 120 Query 420 AGACGAAATTGATACAGAACCTGAGAGCGAAGACGATGTATGTTCGGTCAAAGACGTCCC 479 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGACGAAATTGATACAGAGCCTGAGAGCGAAGACGATGTATGTTCGGTCAAAGACGTCCC 180 Query 480 AAATGTTCACTGTGTAACTGATGAAGACAGCCATAATGGTCGTCGAGGTAGCGAAGCTGA 539 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 181 TAATGTTCACTGTGTAACTGATGAAGACAGCCATAATGGTCGTCGAGGAAGCGAAGCTGA 240 Query 540 TCACGGCAATAATATTTCAGATGGTGGTGTGAGTGTGAGGGGTGGTTACCAAAGGAAACA 599 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 241 TCACGGCAATATTATTTCAGATGGTGGTGTGAGTGTGAGGGGTGGTTACCAGAGGAAACA 300 Query 600 CCGGCGAGGCAAATCGGAGACTTTGAGAGCTCAATACATTAACACAAAGGATATCAAAGT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCGGCGAGGCAAATCGGAGACTTTGAGAGCTCAATACATTAACACAAAGGATATCAAAGT 360 Query 660 GACGGTGGCTACATGGAACGTCGCCGGAAAACGTCCCTCCGATGATCTCGAGATTGAAGA 719 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 GACGGTGGCTACATGGAACGTCGCCGGAAAACGTCCCGCCGATGATCTCGAGATTGAAGA 420 Query 720 TTGGCTCTCTACTGATAATCCTTCAGATATTTACATTATCGGGTTTCAAGAAGTGGTTCC 779 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 TTGGCTCTCTACTGATAATCCTTCAGATATTTACATCATCGGGTTTCAAGAAGTGGTTCC 480 Query 780 ATTAAACGCTGGAAACGTTTTCGGAGCAGAAGATAGAGGTCCGATTCCGAAATGGGAATC 839 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 481 ATTAAACGCTGGAAACGTTTTTGGAGCAGAAGATAGAGGTCCGATTCCGAAATGGGAATC 540 Query 840 GATAATTCGTAGAACACTAAACAAATCCAATAAAGAATCAGTTTATGATCAATCGCCAAG 899 |||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 541 GATAATCCGTAGAACACTGAACAAATCCAATAAAGAATCGGTCGATGATCAATCGCCAAG 600 Query 900 CTGCAACAACAACGCTCTTCATAGATCTCACAGCGCGCCGTCGTCTCCTATCTTGGCACA 959 |||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 601 CTGCAACAACAACGTTCTTCATAGATCTCACAGCGCGCCCTCGTCTCCTATTTTAGCACA 660 Query 960 AGAAGCAAACTCCATTATCTCTCATGTCATGGTAGAGAATCTAGTTGCGGACCACTCGCT 1019 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 661 AGAAGCAAACTCCATTATCTCTGATGTCATGGTAGAGAATCTAGTTGCGGACCACTCGCT 720 Query 1020 GGATTTAGCTACAAACGAGTTCATCGATGCTGCAACCGCTTTACCGAGCCTTGAACCACA 1079 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 721 AGACTTAGCTACAAACGAGTTCATCGATGCTGCAACCGCTTTACCGAGCCTTGAACCAGA 780 Query 1080 GCGGAATCCGAACATGGACTGGCCGGAACTAGCTTTAGATAGCAACCCTCAGATAGTTGG 1139 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 781 GCGGAATCCGAACATGGACTGGCCAGAACTAGCTTTAGATAGCAACCCTCAGATAGTTGG 840 Query 1140 ATCAGAGGGGAAGCTAAGGAGGGTATTTAGCAGCAACGCGACGCTAGGATTTAAGCTACC 1199 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 841 ATCAGAGGGGAAGCTAAGGAGGGTATTTAGCAGCAACGCGACGCTAGGATTTAAGTTACC 900 Query 1200 GGAGAATCCATCAGGAGCTAGTAGATTTGCTTCGGAAGCAAGACAATTGAAACGCTCACG 1259 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 901 GGAGAATCCATCAGGAGCTAGTAGATTTGCTTCGGAAGCAAGACACTTGAAACGGTCACG 960 Query 1260 GAGCTTTGAAACTTTAAACTTGAGTTGGAATGATATAAAAGAAGAGATTGATAATAGGTC 1319 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 961 GAGCTTTGAAACTTTAAACTTGAGTTGGAATGATATAAAAGAAGATATTGATAATAGTTC 1020 Query 1320 CTCCTCCTCGTCCGAAGCGGAAGAAGCTGCAAAAATCATGCATGATGATTCATCAGACGG 1379 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ATCCTCCTCGTCCGAAGCGGAAGAAGCTGCAAAAATCATGCATGATGATTCATCAGACGG 1080 Query 1380 AGATTCGTCTTCCCAGGACGAAGAGGATGGTGACAAGATCAGAAATAGTTATGGATTGCC 1439 |||||||||||| |||| || |||||||| |||||||||||||||||||||||||| || Sbjct 1081 AGATTCGTCTTCAGAGGAAGAGGAGGATGGCGACAAGATCAGAAATAGTTATGGATTACC 1140 Query 1440 GGAAGATTTGGTGGAGGAGTGTCGGAAAGTGAAAGATAGTCAAAAGTATGTAAGGATAGT 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGAAGATTTGGTGGAGGAGTGTCGGAAAGTGAAAGATAGTCAAAAGTATGTAAGGATAGT 1200 Query 1500 AAGTAAGCAAATGGTTGGGATCTATGTATCGGTTTGGATCCGACGACGGTTAAGAAGACA 1559 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AAGTAAGCAGATGGTTGGGATCTATGTATCGGTTTGGATCCGACGACGGTTAAGAAGACA 1260 Query 1560 TGTCAACAACCTGAAAGTCTCACCGGTCGGAGTTGGCTTGATGGGCTACATGGGAAACAA 1619 |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1261 TGTCAACAACTTGAAAGTCTCGCCGGTCGGAGTTGGCTTGATGGGTTACATGGGAAACAA 1320 Query 1620 GGGATCAGTGTCGATTAGCATGACGTTGTATCAATCACGGATGTGTTTTGTGTGCTCACA 1679 |||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 1321 GGGATCAGTGTCGATTAGCATGACATTATATCAATCACGAATGTGTTTTGTGTGTTCACA 1380 Query 1680 CTTAACTTCCGGCCACAAAGACGGTGCTGAGCAACGCCGGAATGCTGACGTGTACGAAAT 1739 ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1381 CTTAACTTCTGGCCACAAAGACGGTGCAGAGCAACGCCGTAATGCTGACGTGTACGAAAT 1440 Query 1740 CATACGTA-GGACTCGTTTTGCATCGGTTCTTGACACTGATCAACCAAGGACGATTCCAT 1798 |||||| | |||||||||| || ||||||||||| || ||||||||||| |||||||||| Sbjct 1441 CATACG-ACGGACTCGTTTCGCCTCGGTTCTTGATACCGATCAACCAAGAACGATTCCAT 1499 Query 1799 GTCACGATCAAGTATTTTGGTTCGGAGATTTGAACTACCGACTTAATATGTCAGACGGTG 1858 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1500 GTCACGATCAAGTATTTTGGTTCGGAGATTTGAACTACCGACTTAATATGGCAGACAGTG 1559 Query 1859 AAGTAAGAAAGCTTGTCTCACAAAAACGATGGGATGAGCTCAAGAACAGTGATCAGTTGA 1918 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 AAGTAAGAAAGCTTGTCGCACAAAAACGATGGGATGAGCTCAAGAACAGTGATCAGTTGA 1619 Query 1919 TTAGAGAATTAAGAAGAGGGCATGTTTTTGATGGATGGAGAGAAGGACCGATTAAATTCC 1978 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1620 TTAGAGAACTAAGAAGAGGGCATGTTTTCGATGGATGGAGAGAAGGACCGATTAAATTCC 1679 Query 1979 CTCCAACCTATAAATACGAATTCGATTCTGATCGTTACGCCGGAGAAAACTTGAGAGAAC 2038 |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1680 CTCCGACCTATAAATACGAATTCGATTCAGATCGTTACGCCGGAGAAACCTTGAGAGAAG 1739 Query 2039 CG-GAGAAGAAGAGAGCTCCTGCTTGGTGTGATAGGATATTATGGTTAGGAAAAGGAATA 2097 | |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct 1740 -GAGAGAAGAAGAGAGCTCCTGCTTGGTGTGATAGAATATTATGGCTGGGAAAAGGAATA 1798 Query 2098 AGACAAGAATGTTATAAGAGATCGGAGATAAGAATGTCCGATCACCGGCCGGTGACTTCG 2157 |||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1799 AGACAAGAGTGTTATAAGAGATCGGAGATAAAAATGTCCGATCACCGGCCAGTGACTTCG 1858 Query 2158 ATTTTTAACGTTGGAGTTGAAGTGTTCGATCACCGGAAACTTCAAAGAGCTCTTCACGTT 2217 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1859 ATATTTAACGTCGGAGTTGAAGTTTTCGATCACCGGAAACTTCAAAGAGCTCTTCACGTT 1918 Query 2218 AATAACGCAGCTGCTTCTGCTGTTCATCCTGAACCTTCTTTTTGAGTCTAATAAGTGT 2275 |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| Sbjct 1919 AATAACGCAGCTGCTTCTGCTGTTCATCCTGAACCTTCCTTTTGAGTCTA-TA-GTGT 1974 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92102212410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5