BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18070.1 Length=1368 Score E Sequences producing significant alignments: (Bits) Value Ahg890395 jgi|Araly1|890395|Al_scaffold_0007_2381 909 0.0 > Ahg890395 jgi|Araly1|890395|Al_scaffold_0007_2381 Length=672 Score = 909 bits (492), Expect = 0.0 Identities = 599/648 (92%), Gaps = 17/648 (3%) Strand=Plus/Plus Query 356 ATGAACGCATAGAGATCACTGATTCAAGCCATGATCATGACAAGAGCTCtagtagcagca 415 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35 ATGAGCGCATAGAGATCACTGATTCAAGCCATGATCATGACAAGAGCTCTAGTAGCAGCA 94 Query 416 gtagtagtagcagcagcagcagcagcTCCAGCTCGGATGATGAGTCACGGGAAGTCAAGA 475 |||||||||| ||| | |||||||| ||||||||||||||||| ||||||||||||| Sbjct 95 GTAGTAGTAGTAGC-G--GCAGCAGC---AGCTCGGATGATGAGTCCCGGGAAGTCAAGA 148 Query 476 AGATAGATGATGATAAGAAGACTGGTGATGATGTTTCTGAAGTTATTACTGTGAGTTCTG 535 ||||||||||| | ||| ||| ||||||| ||||||||||||||||||||||||||||| Sbjct 149 AGATAGATGATAACAAGGAGATTGGTGATTCTGTTTCTGAAGTTATTACTGTGAGTTCTG 208 Query 536 TGCCAATTCAACCTGTGCCTATTGCTGCAGATGCTCCGTTTATGGGATT-TACTGCTAAT 594 ||||||||||||||||||| ||||||| |||||||||||||||||| || |||||||||| Sbjct 209 TGCCAATTCAACCTGTGCCAATTGCTGGAGATGCTCCGTTTATGGG-TTGTACTGCTAAT 267 Query 595 GCGATTGTAGAGAATACTGGTTTGATGGATTCAGCTGTGCCGAATGATCCCGAA-TCTGG 653 ||||||||||||||||| ||||||||||||||| ||||||| | ||||||| || ||||| Sbjct 268 GCGATTGTAGAGAATACCGGTTTGATGGATTCAACTGTGCCTAGTGATCCC-AACTCTGG 326 Query 654 AGAACTGGTTGAGATCTCGCATGTTGATACAATAGTCTCAAACGAGGCTGATGATAATTC 713 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 327 AGAACTGGTTGAGATCTCGCATGTTGATACAATAATCTCAAACGAGGCTGATGAGAATTC 386 Query 714 TTTGCCTAAAGCAACTGAGATTGCTGCTGAAGTTGCTCTTGCATTTGATGAGATTAGGCA 773 |||||||||| || ||||| |||| ||||||||||||||||||| ||||||||||||||| Sbjct 387 TTTGCCTAAACCATCTGAGGTTGCCGCTGAAGTTGCTCTTGCATCTGATGAGATTAGGCA 446 Query 774 GACGTCTTCAGGTGCTACTGACTCTGATGTGAAAGAAAATGAGGGAAAAACTTC---GCC 830 | ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 447 GGCGTCTTCAGGTGCAACTGACTCTGATGTGAAAGAAAATGAGGGAAAAACATCACCGCC 506 Query 831 TCTTCCAGAATCCAACGGTGTTCCTGAAGGCAACATAGAGTCT-AATGTTGTCATTTCTC 889 ||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 507 TCTACCAGAATCCAACGGTGTTCCTGAAGGCAACAGAGAGTCTGAA-GTTGTCATTTCTC 565 Query 890 ATGAGGAAGAGGCTCCCAT-CTTGATACCAACACATGGAATTGCGAAAAGAACCTCATGG 948 ||||||||||||||||| | || |||||||||||||||||||||| |||||||||| ||| Sbjct 566 ATGAGGAAGAGGCTCCCGTGCT-GATACCAACACATGGAATTGCGCAAAGAACCTCGTGG 624 Query 949 TTTAGTTGCTGCGGCTTGTTTGATGTGGTCACAGGATCCAGTAGATAA 996 ||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 625 TTTAGTTGCTGTGGCTTGTTTGATGTGGCCACAGGATCCAGTAGATAA 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51199077531 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5