BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18120.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value Ahg493056 jgi|Araly1|493056|fgenesh2_kg.7__2489__AT4G18120.1 2414 0.0 > Ahg493056 jgi|Araly1|493056|fgenesh2_kg.7__2489__AT4G18120.1 Length=2726 Score = 2414 bits (1307), Expect = 0.0 Identities = 1721/1908 (90%), Gaps = 80/1908 (4%) Strand=Plus/Plus Query 818 CAAGCTGCTTAAAAAGAGGAAACTTGACATACATTTCTCAATCCCCAAGGATAATCCATC 877 |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 860 CAAGCTAATTAAACGGAGGAAACTGGACATACATTTCTCAATCCCCAAGGATAATCCATC 919 Query 878 AGAGAAAGATGTTAACCAAGGAACTCTTGTGGTTTTCAACTTGGCTCCATCAGTTTCCAA 937 || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 920 TGATAAAGATGTTAATCAAGGAACTCTTGTGGTTTTCAACTTGGCTCCATCAGTTTCCAA 979 Query 938 CAGAGACCTTGAAAATATATTCGGTGTTTATGGCGAGATCAAGGAGATACGGGAAACACC 997 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 980 CAGAGACCTTGAAAATATATTCGGTGCTTATGGCGAGATCAAGGAGGTACGGGAAACACC 1039 Query 998 AAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTTAGATCAGCTGATGCAGCTCT 1057 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 AAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTTAGATCAGCTGATGCAGCTCT 1099 Query 1058 CAAAGCTTTGAACAGGACAGAAATTGCTGGAAAACGTATCAAGCTGGAACATAGTCGTCC 1117 |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct 1100 CAAAGCTTTGAACAGGACTGACATTGCTGGAAAACGTATCAAGCTTGAACATAGTCGTCC 1159 Query 1118 TGGTGGTGCTCGTCGAAACATGATGTTGCAAATGAATCCGGAATTGGAACAAGATGATTC 1177 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1160 TGGTGGTGCTCGTCGAAACATGATGTTGCAAATGAATCCGGAATTGGAGCAAGATGATTC 1219 Query 1178 CTACAGCTACCTGAATCATGTCGAGTCGCCTTTGGCAAGCTCTCCAATAGGAAAC---TG 1234 | ||||||||| ||||||||| ||||||||||| ||||||||||| |||| ||| || Sbjct 1220 CCACAGCTACCCGAATCATGTTGAGTCGCCTTTAGCAAGCTCTCCTCTAGGGAACAAGTG 1279 Query 1235 GCGTAATAGTCCTATTGATCATCCTCTACAAAGTTTCAGTAAGTCTCCAATATTTGGAAA 1294 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280 GTATAATAGTCCTGTTGATCATCCTCTACAAAGTTTCAGTAAGTCTCCAATATTTGGAAA 1339 Query 1295 CTTGAGTCCAACAAAGAACATCCGTTATCCAGAATTTTCG--A-TGAAG-A--CT---G- 1344 ||||||||||||||||||||||| |||||||||||||||| | | | | | || | Sbjct 1340 CTTGAGTCCAACAAAGAACATCCATTATCCAGAATTTTCGTCAATTATGCATTCTCAAGA 1399 Query 1345 --CA--TCGG-TGAA--CA--AT-G---ACCAA-GA--AGGAAG-AAG--G-TTTAGCCA 1384 || || | | || | || | | ||| || | |||| ||| | |||||||| Sbjct 1400 AGCAAATCCGATAAAGGCTGCATCGGTGAACAATGACCAAGAAGGAAGATGGTTTAGCCA 1459 Query 1385 CTTGGATCACCTGTTTTCAAGTAGCAGCTATAATAATGCAAGCCACAAAGCTTCTACCTT 1444 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1460 CTTGGATCACCTGTTTTCACGTAGCAGCTATAATAATGCAAGCCACAAAGCTTCTACCTT 1519 Query 1445 TCAGCAACCGCAGTCGTTTGGATCTGTCTCTTCATTTGGTTCTTTGAACTCACACCCGAG 1504 ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1520 TCAGCAACCACAGTCCTTTGGATCTGTTTCTTCATTTGGTTCTTTGAACTCACACCCGAG 1579 Query 1505 TCATGTAGAAACATTATCTGGATCAGAATTCCTGTGGGGAAGCCCTAGTTCTTCAGCCTG 1564 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1580 TCACGTAGAAACATTATCTGGATCAGAGTTCCTGTGGGGAAGCCCTAGTTCTTCAGCCTG 1639 Query 1565 GCCTGTGAATCCATTCTCTTCAAACAG-AGAAAATCACAGGTTTCCGTACTCAGCTCAGA 1623 ||||||||||||||||||||||||| | | ||||| |||||||| | ||||||||||||| Sbjct 1640 GCCTGTGAATCCATTCTCTTCAAAC-GTAAAAAATAACAGGTTTTCTTACTCAGCTCAGA 1698 Query 1624 ACGGATCCCTCCACCAGCTTCATCATATCGGATCTGCGCCATCTGGATTCTTCCCGAGGT 1683 |||| || ||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 1699 ACGGGTCGCTCCACCAGCTCCATCATGTTGGATCTGCGCCATCTGGATTCTTCCCGAGGT 1758 Query 1684 CCCCTGAAACTTCATCAATGGGTTCAGTGGCTTTCCGAGGAGCAAGTGGTAATATGAATG 1743 ||||||||||||||||||||| | | || |||||||||||||||| |||||||| Sbjct 1759 CCCCTGAAACTTCATCAATGG---C--T---TT-CCGAGGAGCAAGTGGTCATATGAATT 1809 Query 1744 CTCAAAGGAACTTGCGTGAAACTAGCTCTCCAA-ATTTTAAAATGTTGTCTGCTCCAAGA 1802 ||||||| ||||| ||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 1810 CTCAAAGAAACTTACGTGAAACTAGCTCTCCAAGATTT-AAAATGTTGTCTTCTCCAAGA 1868 Query 1803 CGTAGTCAATTGTTTACAGGCAATGGCTCTTACCTCTGGCCTGCTGCTACAATGGTTTCC 1862 | ||||||||||||||| |||||||||||||||| || |||| | ||||||||| |||| Sbjct 1869 CTTAGTCAATTGTTTACGGGCAATGGCTCTTACCACTTACCTGTTCCTACAATGGCTTCC 1928 Query 1863 ATTGACGACCCATTGGAGGATGGAAGCAACCAACAGTTTGATAGTAACGGTAACCAAGCC 1922 ||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| | Sbjct 1929 ATTGACGACCCATTGGAGGTTGGAAGGAACCAACAGTTTGATAGTAACGTTAACCAAGTC 1988 Query 1923 GACATCAAGATACAGTTTCAGCTTGACTTGAGTAAGATTATGAGGGGTGAAGATCCACGG 1982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1989 GACATCAAGATACAGTTTCAGCTTGACTTGAGTAAGATTATGAGGGGTGAAGATCCACGG 2048 Query 1983 ACAACCTTGATGATAAAAAACATCCCAAATAAGTATACCCGGAATATGCTCTTAGCTGCC 2042 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 2049 ACAACCTTGATGATAAAAAACATCCCTAATAAGTATACCCGGAATATGCTGTTAGCTGCC 2108 Query 2043 ATCGACGAGAAAAACAGTGGAACTTATGATTTTCTTTATTTGCCTATTGATTTCAAGAAT 2102 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2109 ATCGACGAGAAAAACAGTGGAACTTATGATTTTCTATATTTGCCTATTGATTTCAAGAAT 2168 Query 2103 AAATGTAATGTGGGGTATGCATTTATCAATATGGTGTCTCCTAAATTCACCATTGCATTG 2162 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 2169 AAATGTAATGTGGGGTATGCATTTATCAATATGGTGTCTCCTAAATTCATCATTGCACTG 2228 Query 2163 TACGAGGCCTTTAATGGAAAGAAATGGGATAAGTTCAACAGCGAGAAAGTTGCTTCATTG 2222 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 2229 TACGAGGCCTTTAATGGAAAAAAATGGGATAAGTTCAACAGCGAGAAAGTTGCTTCGTTG 2288 Query 2223 GCTTATGCACGAATCCAAGGTAAAGCTGCGCTTATTGCTCACTTTCAGAACTCAAGTTTG 2282 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 2289 GCTTATGCACGAATCCAAGGTAAAGCTGCGCTTATTGCTCACTTTCAGAACTCGAGCTTG 2348 Query 2283 ATGAATGAAGATAGGAGATGCCAACCTATTGTCTTTGATGGATCAGAATCTAAATATCCG 2342 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2349 ATGAACGAAGATAGGAGATGCCAACCTATTGTCTTTGATGGATCAGAATCTAAATATCCG 2408 Query 2343 ATCATCCGGGAGAATTCGCAGCTCGAGGCATCAAATTCAACGGTTTCTCATCCTCTTGTC 2402 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 2409 ATCATCCGGGCGAATTCGCAGCTCGAGGCATCAAATTCAACGGTTTCTCATCCTGTAGTC 2468 Query 2403 GGCGAGAACACACATCAAAGCTGACAGTCAAGTGAATCACGTTATTGCCT-CTGGTTTAA 2461 ||||| ||| |||||||||||||||| ||||||||| | ||||| ||| | ||||||| Sbjct 2469 AGCGAGGGCACGCATCAAAGCTGACAGTGAAGTGAATCCCATTATTTCCTTC-GGTTTAA 2527 Query 2462 AACGTAAATATCAGTTTCTAGGATGAGATGATGATGAACAACA-ACAAACTACTACATAG 2520 ||||||||||||||||| ||||||||||||||||||| | | | ||| | | | | | Sbjct 2528 AACGTAAATATCAGTTTTTAGGATGAGATGATGATGA-CTTTAGA-AAATTT-T-C-TGG 2582 Query 2521 TACCCTTTAGAAACATTTCTGGTTTTCTCAGTTCCTTCTAGTTTGCTGGTATCCAGAATT 2580 | || ||| | ||||||||| ||| | |||| | || ||| |||| Sbjct 2583 TTTTCTC-AGAT-C-TTTCTGGTT------GTT--TG---GTTTCC-GGAATC-AGAA-- 2624 Query 2581 AGAAAGAATTATTGTTCTAGACATGTGAATTGATGGTTGTGTTTTACTTTTGTC-TGGTT 2639 || | | || | | ||||||||||| |||||||||||||||||| ||||||| ||||| Sbjct 2625 AGTATTA-TT-T-GATCTAGACATGTAAATTGATGGTTGTGTTTT--TTTTGTCCTGGTT 2679 Query 2640 GGCCAAATGATCTCTCCA-AATTGTATACATAGGATAGTTAAGATACA 2686 |||||||| ||||||||| ||| ||||||||||||||||| ||||||| Sbjct 2680 GGCCAAATCATCTCTCCACAAT-GTATACATAGGATAGTTTAGATACA 2726 Score = 1020 bits (552), Expect = 0.0 Identities = 719/797 (90%), Gaps = 22/797 (3%) Strand=Plus/Plus Query 9 CTTCTCCATCCAATTAAAGATTCTCTC-TTTTAATAATGCTTTCAAAAGAATATCTAATT 67 ||||||||||||||||||||||||||| |||||||||||||||||||||||| || | Sbjct 1 CTTCTCCATCCAATTAAAGATTCTCTCTTTTTAATAATGCTTTCAAAAGAAT-TC--A-- 55 Query 68 TCAGGAATAATCAA--AAACT-TATTTAATTTCTCTCTTCTTTATCAATGTGTATATATA 124 | |||||||||| | |||||| |||||||||||||||||||||||||||||| Sbjct 56 -C--GAATAATCAATTTTTTTATATTTATTTTCTCTCTTCTTTATCAATGTGTATATAT- 111 Query 125 ATACACACATAT-ATA-AGAAAGTGTTTCTTCTGTATTCGTGGGAGA-AACAAACAAAAA 181 ||| | | | | | | |||||| ||||||||||||||||||||||| || || | | Sbjct 112 ATATATAGA-GTCAGAGAGAAAGCGTTTCTTCTGTATTCGTGGGAGAGGAC-AA-ATTAT 168 Query 182 ACAATTTC-TTCTAGCGAAGAAGCAGAATTAATCAAAGTTCAGAGCTTTCACTATGAATA 240 || ||| || | |||||||||| || |||||| |||| ||| |||||| | ||||||| Sbjct 169 TGAAGTTCGTTGTTGCGAAGAAGCGGAGTTAATCGAAGTGCAGGGCTTTCGCAATGAATA 228 Query 241 TCCCAAGTGGAACCTTCTCAAGATCTGATCATTTCCATGCTTCAAGTGATGCTTCTCTCT 300 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 TCCCAAATGGAACCTTCTCAAGATCTGATCATTTCCATGCTTCAAGTGATGCTTCTCTCT 288 Query 301 TTTCAAGCTCTCTTCCTCTTATTCAACACCAAAACATCAACCCTCGTGAC-AGCTACCAT 359 |||| || ||||| ||| || |||||||||||||| |||||||||| | | ||||||||| Sbjct 289 TTTCCAGTTCTCTACCTGTTCTTCAACACCAAAACCTCAACCCTCGCG-CGAGCTACCAT 347 Query 360 CAGTCTGTTGATGAAATGGCTTCTGGCTTAGACCATTTTAGTGGAGGCATTGGCAATATG 419 ||||||||||||||||| ||||| |||||| | || | | ||||||||||||||||||| Sbjct 348 CAGTCTGTTGATGAAATTGCTTCCGGCTTAAATCAATACAATGGAGGCATTGGCAATATG 407 Query 420 CTTGATGATGGTGACTCACATCCAATCGGAAACATGCTTCCTGATGATGAGGAAGAGCTT 479 |||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 408 CTTGATGATGGTGAGTCACATCCAATCGGAAGCATGCTTCCCGATGATGAGGAAGAGCTT 467 Query 480 TTCTCTGGTCTAATGGATGATTTAAACTTAAGTTCCTTGCCAGCTACGTTGGATGACTTG 539 ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| Sbjct 468 TTCTCTGGTCTAATGGATGATTTAAACTTAAGTTCTTTGCCTGCTATGTTGGATGACTTG 527 Query 540 GAAGATTATGATTTATTCGGTAGCGGAGGAGGTCTTGAATTGGAGACTGATCCATATGAC 599 ||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||| Sbjct 528 GAAGATTATGATTTATTTGGTAGCGGAGGAGGGCTTGAACTGGAGACTGACCCATATGAC 587 Query 600 AGTCTAAACAAGGGCTTCTCAAGAATGGGTTTTGCTGATTCTAACGTTGACAATGTTATG 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 588 AGTCTAAACAAGGGCTTCTCAAGAATGGGTTTTGCTGATTCTAACGTTGACAATGGTATG 647 Query 660 CCTCAAAACATTTTCCAAAATGGAGTGGGATCGATTGCTGGCGAACATCCTTATGGTGAA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 CCTCAAAACATTTTCCAAAATGGAGTGGGATCGATTGCTGGCGAACATCCTTATGGTGAA 707 Query 720 CATCCTTCAAGGACTTTGTTTGTTCGGAATATTAACAGTAACGTAGAGGATTCTGAATTG 779 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 708 CATCCTTCAAGGACTCTGTTTGTTCGGAATATTAACAGTAACGTTGAGGATTCTGAATTG 767 Query 780 CAAGCTCTTTTTGAGCA 796 ||||||||||||||||| Sbjct 768 CAAGCTCTTTTTGAGCA 784 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102767481010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5