BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18170.1 Length=1242 Score E Sequences producing significant alignments: (Bits) Value Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1 1779 0.0 Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413 224 1e-57 > Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1 Length=1200 Score = 1779 bits (963), Expect = 0.0 Identities = 1141/1222 (93%), Gaps = 32/1222 (3%) Strand=Plus/Plus Query 1 AAAGTCCAAGCACCAATCTAGACC-TCTTAGGaaaaaaaCCTAAAAACCTAATCCCCAAA 59 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1 AAAGTCCAAGCACCAATCTAGACCTTC-TAGGAAAAAAACCTAAAAACCTAATCCCCAAA 59 Query 60 CCTAAAAGGcttatctcatctcttcttctttgtcttc-tttactctttttttacctctct 118 ||||||||||||||||| ||||||||||||||||||| |||| |||||||| | | | Sbjct 60 CCTAAAAGGCTTATCTCCTCTCTTCTTCTTTGTCTTCTTTTA--CTTTTTTT---T-T-T 112 Query 119 cttcattgttcttcACCATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCTT 178 | || ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 113 C-TC-----TCTTCACCATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCAT 166 Query 179 CATCGTTTTCGTTGCACGAAATGATGAATCTGCCTACTTCAAATCCATCTTCTTATGGAA 238 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 167 CATCGTTTTCCTTGCACGAAATGATGAATCTACCTACTTCAAATCCATCTTCTTATGGAA 226 Query 239 ACCTCCCATCACAAAACGGTTT-TAATCCATCTACTTATTCCTTCACCGATTGTCTCCAA 297 | || |||||||||||||||| | ||||||||||||| |||||||||||||| |||||| Sbjct 227 ATATCTCATCACAAAACGGTTTGT-ATCCATCTACTTACTCCTTCACCGATTGCCTCCAA 285 Query 298 AGTTCTCCAGCAGCGTATGAATCTCTACTTCAGAAAA-CTTTTGGTCTTTCTCCCTCTTC 356 |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 286 AGTTCTCCAGGAGCGTATGAATCTCTACTTCA-AAAATCTTTTGGTCTTTCTCCCTCTTC 344 Query 357 CTCAGAGGTTTTCAATTCTTCGATCGATCAAGAACCGAACCGTGATGTTACTAATGACGT 416 ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| || Sbjct 345 CTCAGAGGTTTTCAACTCTTCGATTGATCAAGAACCAAACCGTGATGTTACTAATGATGT 404 Query 417 AATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTCCTTCTAATTCTTCCTC 476 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || Sbjct 405 AATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTGCATCTAATTCTTCATC 464 Query 477 TAGTGAGGCTGATCACCCCGGTGAAGATTCCGGTAAGAGCCGGAGGAAACGAGAGTTAGT 536 ||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 465 TAGTGAGGCTGATCATCCCGGGGAAGATTCCGGCAAGAGTAGGAGGAAACGAGAGTTAGT 524 Query 537 CGGTGAAGAAGATCAAATTTCCAAAAAAGTTGGGAAAACGAAAAAGACTGAGGTGAAGAA 596 ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 525 CGGAGAAGAAGATCAAAGTTCCAAAAAAGTTGGGAAAACGAAAAAGAATGAGGTGAAGAA 584 Query 597 ACAAAGAGAGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGG 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 ACAAAGAGAGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGG 644 Query 657 TTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTA 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTA 704 Query 717 CTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTCCAAGA 776 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 705 CTATAGATGTACAACGCAAAGGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTTCAAGA 764 Query 777 TCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCT 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 TCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCT 824 Query 837 TCGAGGAAGTTCTGCCGCGGCTGCTATGTTCTCCGCAGACCTCATGACTCCAAGAAGCTT 896 || |||||||| || || |||||||||||||| ||||| |||||||||||||||||||| Sbjct 825 CCGGGGAAGTTCCGCGGCAGCTGCTATGTTCTCTGCAGATCTCATGACTCCAAGAAGCTT 884 Query 897 TGCACATGATATGTTTAGGACGGCAGCTTATACTAACGGCGGTTCTGTGGCGGCGGC--- 953 |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| Sbjct 885 TGCACATGATATGTTTAGGACGGCGGCTTATACTAACGGTGGTTCTGCGGCGGCGGCGGC 944 Query 954 TTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATTCAAACCCTAGTTCTCA 1013 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 945 TTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATGCAAACCCTAGTTCTCA 1004 Query 1014 CCAAGTGTATCATCAAGGGGGTGAGTATGAGCTCTTGAGGGAGATTTTTCCTTCAATTTT 1073 |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1005 TCAAGAGTATCATCAAGGGGGTGAGTACGAGCTCTTGAGGGAGATCTTTCCTTCAATTTT 1064 Query 1074 CTTTAAGCAAGAGCCTTGATCGATCATTGTTATAACTA-Catatattatat--atatTGA 1130 ||| ||||||||||||||||| ||||||||||||| || | || ||| ||| | | || Sbjct 1065 CTTCAAGCAAGAGCCTTGATCAATCATTGTTATAATTAAC-TA-ATT-TATTGAGAGAGA 1121 Query 1131 GAGAGAGAGGTAGAGaaaaaaaaaaCTTATATGTAACTTAAGATCTTATTTTGTCTCTCT 1190 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1122 GAGAGAGAGGTAGAGAAAAAAAA--CTTATATGTAACT-AAGATCTTATTTTGTCTCTCT 1178 Query 1191 TATTTGCATGTACATATTTTTT 1212 |||||||||||||||||||||| Sbjct 1179 TATTTGCATGTACATATTTTTT 1200 > Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413 Length=846 Score = 224 bits (121), Expect = 1e-57 Identities = 202/241 (84%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 591 GAAGAAACAAAGAG-AGCCACGAGTCT-CGTTTATGACTAAAAGTGAAG-TTGATCATCT 647 ||||||| | |||| ||| | | || | | |||||||| ||||| | || |||||||||| Sbjct 345 GAAGAAAGAGAGAGAAGCTA-GGGT-TGCATTTATGACCAAAAGCG-AGATTGATCATCT 401 Query 648 TGAAGATGGTTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCC 707 ||||||||||||||||||||||||||| || |||||||| || || || || |||||||| Sbjct 402 TGAAGATGGTTATAGATGGAGAAAATATGGACAAAAGGCCGTCAAGAACAGTCCTTATCC 461 Query 708 AAGGAGTTACTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATC 767 ||||||||||||||| || |||||||| ||||| |||||||||||||| || |||||||| Sbjct 462 AAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGATC 521 Query 768 GTTCCAAGATCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCC 827 || |||||||| || | || |||||||| ||||| || |||||||||| ||||| || Sbjct 522 ATTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCCC 581 Query 828 G 828 | Sbjct 582 G 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46395589989 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5