BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18250.1
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493041 jgi|Araly1|493041|fgenesh2_kg.7__2474__AT4G18250.1 3009 0.0
Ahg494154 jgi|Araly1|494154|fgenesh2_kg.7__3587__AT5G38280.1 761 0.0
Ahg476148 jgi|Araly1|476148|fgenesh2_kg.2__1278__AT1G70250.1 647 0.0
> Ahg493041 jgi|Araly1|493041|fgenesh2_kg.7__2474__AT4G18250.1
Length=2559
Score = 3009 bits (1629), Expect = 0.0
Identities = 2271/2571 (88%), Gaps = 84/2571 (3%)
Strand=Plus/Plus
Query 19 TTGTCCATGAGTATCCTTACCATAGAGAACAAGTGCAATCACACAGTTTGGCCAGTTATC 78
||||| |||||||||||||||||||||||||| ||| || ||||||| |||||||| |||
Sbjct 4 TTGTCAATGAGTATCCTTACCATAGAGAACAAATGCGATTACACAGTCTGGCCAGTAATC 63
Query 79 TTCTCATGGAACGTTGACTCACAAGTCTCCCC-AACAGGCTTTGCTCTCAGAAGAGGGGA 137
|| |||||||| ||| | | | | ||||||| ||| ||||| ||||||| ||| |||||
Sbjct 64 TTTTCATGGAA-GTT-A--C-CGA-TCTCCCCAAAC-GGCTTCGCTCTCACAAGCGGGGA 116
Query 138 GGCTCG-AGCCCTACAGGCGCCA-TCTTCATGGTACGGTCTTATCTC-GGCTAGGACGCT 194
||| || | || |||| ||| | ||||| |||||||||||||| || || | |||||||
Sbjct 117 GGCACGTA-CCGTACATGCG-GAGTCTTCGTGGTACGGTCTTATATCTGG-TCGGACGCT 173
Query 195 ATGCTCCATCGACTCAACAGGAACA-TTCTCTTGCGCCACAGGAGACTGCGAATCGGGTA 253
||||| | | |||| | ||||| | ||||| ||||| || ||||||||| |||| || |
Sbjct 174 CTGCTCAACCAACTCTAGAGGAA-ATTTCTCGTGCGCTACCGGAGACTGCCAATCCGGCA 232
Query 254 CGATCGAGTGTCCTGGC-AATTACG-GTTGGGCTCCGGTGACTTATGTCTACTTT-AG-- 308
||||||||||| | | || |||| | ||| || | ||||||||||| || ||| ||
Sbjct 233 ATATCGAGTGTCCCGACGAA-TACGAG-TGGTCTGCTGTGACTTATGTGTA-TTTAAGAA 289
Query 309 -----AA---T-G----AACAGCTACACCATCAGTGTTGAGTACGGTTACAACCTTCCAC 355
|| | | |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 290 TCAATAATGGTGGCATCAACAGCTACACCATCAGTGTTGAGTATGGTTACAACCTTCCGC 349
Query 356 TAATGGTGGTCCCTTCACAGCGTAGCCGG-ACATGTATCAGCGCTGGTTGCGTTGTTGAA 414
||||||| ||||| ||||| |||| ||| |||||||||||| | ||||| | |||||
Sbjct 350 TAATGGTCGTCCCGTCACATAGTAG-CGGTACATGTATCAGCTCGGGTTGTATGGTTGAT 408
Query 415 CTGAAAAAGACTTGTCCAAAAGATCTT-ATGAAAATGTCCAGAGA-AAATCTAGTCGCCT 472
||||||||||| ||||| | |||||| | | | | || | || ||| | | ||| |
Sbjct 409 CTGAAAAAGACATGTCCTGATGATCTTGA-GTTATTCACCGGGGAGAAA-CAAATCGGTT 466
Query 473 GTAGTAGCACGTGCAT-G-GAGTTTGATA-CTCCGGAGGCTTGTTGCACCCGA-GACTTC 528
| | |||| |||| | | | | | || || |||| ||||||||| | | ||||||
Sbjct 467 GCATTAGCGCGTG--TCGAAAATACGGTACCT-GGGAGATTTGTTGCACAC-ATGACTTC 522
Query 529 AAG-TCAAAGCAAAAC-TGCAAGCCGACAGTGTACACGCAGAACTTTGAGCGAGCTTGCC 586
|| ||||||| |||| ||||| || ||| ||||||||||||||| |||||||||||||
Sbjct 523 -AGTTCAAAGC-AAACTTGCAAACCAACACAGTACACGCAGAACTTCGAGCGAGCTTGCC 580
Query 587 CACTC-G-CTCATATCTACGCCTATGATGATAACAATAGCACCGTT-ACATG-CCTAAAC 642
|| || | || ||| ||||||||| | |||| || |||| |||| | ||| ||| |||
Sbjct 581 CA-TCTGCCT-ATAGCTACGCCTACAACAATAATAACAGCA-CGTTCATATGCCCT-AAC 636
Query 643 TCTACTGACTACGTCATCACTATCATAACCATAGAAAACAAATGCAACAACACAATTTGG 702
|| ||||||| ||||||||||||| | |||||||| |||||||| | ||||||||||||
Sbjct 637 TCAACTGACTTCGTCATCACTATCCTTACCATAGAGAACAAATGTAGTAACACAATTTGG 696
Query 703 CCAGTCATCTTCTCATGGCGGTCACAAGTTTCCACCACCGGCTTCACTCTCAAGACCGGA 762
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 697 CCAGTCATCTTTTCATGGCGGTCACAAGTCTCCACCACCGGCTTCACTCTCAAGACCGGA 756
Query 763 GAGGAACGTGCCATAAACGCACCATCTTCATGGTACGGTCTTATCTCAGCTAGGACTCTT 822
|||| || |||||| |||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 757 GAGGCGCGAGCCATACACGCGCCATCTTCATGGTACGGTCTTATCTCGGCTAGGACGCTA 816
Query 823 TGCTCCAATGACTCAACAGGAAACTTCTCATGCGCCACGGGAGACTGTGAATCCGGCGAG 882
|||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 817 TGCTCC-A--ACTCAACAGGAAATTTCTCATGCGCCACGGGAGACTGCGAATCCGGCGAG 873
Query 883 ATCGAGTGTCCCGGCACCTACAAATGGTCTCCTGTAACTTACGTCATATTTAGAATCGAT 942
|| ||||| |||||| | |||| ||||||||||| |||||| || ||||||||||||||
Sbjct 874 ATAGAGTGCCCCGGCGCATACAGTTGGTCTCCTGTGACTTACATCTTATTTAGAATCGAT 933
Query 943 GACGGAC-AAATCAACAGCTATATCATCAGCCTCGAGTTCGGTTACAACCTTCCACTAAC 1001
|| || | ||||||||||||||||||||||||||||| |||||||||||| |||||| |
Sbjct 934 GATGG-CGGAATCAACAGCTATATCATCAGCCTCGAGTACGGTTACAACCTGCCACTAGC 992
Query 1002 GGTTGTTCCGTCAAACCCGGCATGTATCAGCTCAGGTTGTATGGTTGACTTGAACAAGAC 1061
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 993 GGTTGTTCCGTCAAGCCCGGCATGTAGCAGCTCAGGTTGTATGGTTGACTTGAACAAGAC 1052
Query 1062 ATGTCCAAATGATCTTAAGGAATTCTCC-AGGAGAGGTTTAGTCGCCTGCAAAAGTGCGT 1120
||||||||||||||||||| |||||||| ||| ||| |||||| |||||||| || ||||
Sbjct 1053 ATGTCCAAATGATCTTAAGAAATTCTCCAAGG-GAGATTTAGTTGCCTGCAATAGCGCGT 1111
Query 1121 GTCGACAATCCGCATCCGATGAGAATTGTTGCACTAATTACTTCAAGT-ATAAGCAAACT 1179
||| | |||||| |||| | |||||||||||||| ||||||||||| | | |||||||||
Sbjct 1112 GTCAAGAATCCGAATCCCAGGAGAATTGTTGCACAAATTACTTCAACTCA-AAGCAAACT 1170
Query 1180 TGTAAGCCGACACCGTACGTACAGAACTTCGACCGTGCTTGCCCATCCGCTTATAGCTAC 1239
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1171 TGTAAGCCGACACAGTACGTACAGAACTTCGACCGTGCTTGTCCATTCGCTTATAGCTAC 1230
Query 1240 CCCTTCAGCGGTAATAACAGTACCTTCACATGCACAAATTCAACTGATTACGTGATCACG 1299
|||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1231 CCCTACAACGGTAATAACAGTACCTTCACATGCACAAATTCAACTGACTACATGATCACG 1290
Query 1300 TTTTGTCCCTCCTCCATTCCCAACACCACAAGCAGCTCGATGGCTCAACTACCACAACCA 1359
||||| |||||||| |||||||||||||| || ||||||||||||| | | || |||||
Sbjct 1291 TTTTGCCCCTCCTCTATTCCCAACACCACCAGAAGCTCGATGGCTCCATTTCCTGAACCA 1350
Query 1360 AAACATAATTCTCTACGGAAGTTAAAACCGATACTTGGAGGCTCAGCAGCTTTAATTGTG 1419
||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 1351 AAAGATAATTCTCTAAGGACGTTAAAACCCATACTTGGAGGCTCAGCAGCTTTAGCTGTG 1410
Query 1420 TTGATCAGTATTGTTGTGATTGC-GCTAGTAGTGAGAGCGAGGCATGCGAAAAGAAAGAG 1478
||||||| | ||||||||||||| || |||||||||||| | | ||||||||||||||||
Sbjct 1411 TTGATCATTCTTGTTGTGATTGCGGC-AGTAGTGAGAGCAAAGAATGCGAAAAGAAAGAG 1469
Query 1479 TGAATTGAACGACGAGAACATTGAAGCGGTTGTGATGTTGAAACGTTATAGCTTTGAAAA 1538
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1470 TGAATTGAACGACGAGAACATTGAAGCGGTTGTGATGTTAAAACGTTATAGTTTTGAAAA 1529
Query 1539 AGTCAAGAAGATGACAAACTCGTTTGATCATGTTATTGGGAAAGGAGGATTTGGAACTGT 1598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1530 AGTCAAGAAGATGACAAACTCGTTTGATCATGTTATAGGGAAAGGAGGATTTGGAACTGT 1589
Query 1599 CTATAAAGGAAAACTACCCGATGCCAGCGGCCGAGATATTGCTCTGAAGATCTTGAAAGA 1658
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1590 CTATAAAGGAAAACTACCGGATGCTAGCGGCCGAGATATTGCACTGAAGATCTTGAAAGA 1649
Query 1659 GTCAAAAGGGAATGGAGAAGAGTTCATCAATGAACTAGTTAGCATGAGTAGAGCTTCTCA 1718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GTCAAAGGGGAATGGAGAAGAGTTCATCAATGAACTAGTTAGCATGAGTAGAGCTTCTCA 1709
Query 1719 TGTTAACATCGTTTCTCTTTTTGGATTTTGCTATGAAGGGAGCCAGAGAGCTATTATCTA 1778
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1710 TGTTAATATCGTTTCTCTGTTTGGATTTTGTTATGAAGGGAGCCAGAGAGCTATTATCTA 1769
Query 1779 CGAGTTCATGCCGAATGGATCCCTTGACAAGTTTATATCCGAGAATATGTCAACAAAGAT 1838
||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1770 CGAGTTCATGCCGAACGGATCGCTTGACAAGTTTATATCCGAGAATATGTCTACGAAGAT 1829
Query 1839 AGAGTGGAAAACATTATACAACATCGCGGTAGGTGTTGCTCGTGGGCTCGAGTACTTGCA 1898
||| |||||||| ||||||||||| || |||||||||||||| ||| | |||||||||||
Sbjct 1830 AGACTGGAAAACGTTATACAACATTGCCGTAGGTGTTGCTCGCGGGTTAGAGTACTTGCA 1889
Query 1899 CAATAGTTGTGTATCCAAGATTGTGCATTTCGATATAAAGCCACAGAATATACTCATAGA 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 CAATAGTTGTGTATCCAAGATTGTGCATTTCGATATAAAGCCACAGAATATACTCATAGA 1949
Query 1959 CGAAGACTTATGCCCGAAGATTTCGGATTTCGGTCTTGCTAAGCTATGCAAAAAGAAAGA 2018
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1950 CGAAGACTTTTGCCCGAAGATTTCGGATTTCGGTCTTGCTAAGTTGTGCAAAAAGAAAGA 2009
Query 2019 AAGTATCATATCAATGTTAGACGCGAGAGGGACAGTAGGGTACATTGCTCCTGAAATGTT 2078
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2010 AAGTATCATATCAATGTTAGACGCGAGAGGGACAGTAGGCTACATTGCTCCTGAAATGTT 2069
Query 2079 TTCCAAGAACTATGGAGGAGTTTCGCATAAGTCAGATGTGTATAGTTATGGAATGGTGGT 2138
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2070 TTCCAAGAACTATGGAGGAGTTTCGCATAAGTCGGATGTGTATAGTTATGGAATGGTGGT 2129
Query 2139 TCTTGAGATGATTGGGGCAACGAAAAGAGAAGAAGTTGAAACTTCTGCGACCGATAAAAG 2198
|||||||||||| ||||| |||||||||||||||||| |||||||| ||||| |||||||
Sbjct 2130 TCTTGAGATGATCGGGGCGACGAAAAGAGAAGAAGTTAAAACTTCTACGACCAATAAAAG 2189
Query 2199 TTCAATGTACTTTCCTGATTGGGTCTATGAGGATCTTGAGAGGAAAGAAACCATGAGACT 2258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2190 TTCAATGTACTTTCCAGATTGGGTCTATGAGGATCTTGAGAGGAAAGAAACCATGAGACT 2249
Query 2259 ATTAGAAGATCATATAATCgaagaagaagaagaagagaagatagtgaagagaaTGACATT 2318
|||||||||||||| |||||||||||||||||| || | ||||||||||| |||||||||
Sbjct 2250 ATTAGAAGATCATAGAATCGAAGAAGAAGAAGA-GA-A-GATAGTGAAGAAAATGACATT 2306
Query 2319 AGTGGGTTTGTGGTGTATACAAACCAATCCATCTG-ATCGTCCACCAATGAGAAAAGTTG 2377
||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 2307 AGTAGGTTTGTGGTGTATACAGACCAATCCAT-TGGATCGTCCACCAATGAGAAAAGTTG 2365
Query 2378 TTGAAATGTTAGAGGGCAGTCGTCTAGAAGCTCTACAGGTTCCACCTAAGCCTCTCTTGA 2437
|||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||
Sbjct 2366 TTGAAATGTTAGAGGGAAGTC-T--AGAAGCTCTACAGGTCCCACCTAAGCCTCTCTTGA 2422
Query 2438 ATTTACACGTAGTAACGGATTGGGAAACTTCTGAAGATAGTCAACAG-ACTTCTAGACTC 2496
||||||| |||||||| |||||||||||| ||||||||| |||| | ||||||| |||
Sbjct 2423 ATTTACATGTAGTAACAGATTGGGAAACTGCTGAAGATAATCAAG-GTACTTCTACTCTC 2481
Query 2497 TCGACACAAAGCTTGTTAGAGAGAAAAACTCGTTCGAATTACCAATATACT 2547
|||||||||||||||||| | |||||||||| ||||||| ||| ||||||
Sbjct 2482 TCGACACAAAGCTTGTTAAACAGAAAAACTCTTTCGAATCGCCACTATACT 2532
Score = 316 bits (171), Expect = 4e-85
Identities = 511/665 (77%), Gaps = 64/665 (10%)
Strand=Plus/Plus
Query 30 TATCCTTACCATAGAGAACAAGTGCAATCACACAGTTTGGCCAGTTATCTTCTCATGGAA 89
||||||||||||||||||||| || | | ||||| |||||||||| ||||| ||||||
Sbjct 657 TATCCTTACCATAGAGAACAAATGTAGTAACACAATTTGGCCAGTCATCTTTTCATGG-- 714
Query 90 CGTTGACTCACAAGTCTCC-CCAACAGGCTTTGCTCTCAGAAGA--GGGGAGGCTCGAGC 146
|| | |||||||||||| || || ||||| ||||| |||| || ||||| |||||
Sbjct 715 CG--G--TCACAAGTCTCCACC-ACCGGCTTCACTCTC--AAGACCGGAGAGGCGCGAGC 767
Query 147 CCTACAGGCGCCATCTTCATGGTACGGTCTTATCTCGGCTAGGACGCTATGCTCCATCGA 206
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 768 CATACACGCGCCATCTTCATGGTACGGTCTTATCTCGGCTAGGACGCTATGCTCCA---A 824
Query 207 CTCAACAGGAACATT-CTCTTGCGCCACAGGAGACTGCGAATC-GG-GTACGATCGAGTG 263
||||||||||| ||| ||| |||||||| |||||||||||||| || | | ||| |||||
Sbjct 825 CTCAACAGGAA-ATTTCTCATGCGCCACGGGAGACTGCGAATCCGGCG-A-GATAGAGTG 881
Query 264 TCCTGGCA-ATTACGGTTGGGCTCCGGTGACTTATGTCT-ACTTTAGAAT-GAACA-G-C 318
|| ||| || || ||||| |||| |||||||| ||| | |||||||| || | | |
Sbjct 882 CCCCGGCGCAT-ACAGTTGGTCTCCTGTGACTTACATCTTA-TTTAGAATCGATGATGGC 939
Query 319 ----T-A-CA-C-----CATCAGTGTTGAGTACGGTTACAACCTTCCACTAATGGTGGTC 366
| | || | |||||| | ||||||||||||||||| |||||| ||| ||
Sbjct 940 GGAATCAACAGCTATATCATCAGCCTCGAGTACGGTTACAACCTGCCACTAGCGGTTGTT 999
Query 367 CCTTCACAGCGTAGCCGGACATGTATCAGCGCTGGTTGCGTTGTTGAACT-GAAAAAGAC 425
|| ||| ||| |||| |||||| |||| | ||||| | ||||| || ||| |||||
Sbjct 1000 CCGTCA-AGC----CCGG-CATGTAGCAGCTCAGGTTGTATGGTTGA-CTTGAACAAGAC 1052
Query 426 TTGTCCAAAAGATCTTATGAAAATGTCCA-GAGAAAATCTAGTCGCCTGTAGTAGCACGT 484
|||||||| ||||||| |||| | |||| | || | | |||| ||||| | |||| |||
Sbjct 1053 ATGTCCAAATGATCTTAAGAAATTCTCCAAGGGAGATT-TAGTTGCCTGCAATAGCGCGT 1111
Query 485 G-CATGGAGTTTGATACTCC--GGAGGCTTGTTGCACCCGAG-ACTTCAAGTCAAAGCAA 540
| || | | | || | ||| |||| ||||||||| | ||||||| |||||||||
Sbjct 1112 GTCAAGAA-TCCGA-A-TCCCAGGAGAATTGTTGCACAA-ATTACTTCAACTCAAAGCAA 1167
Query 541 AACT-GCAAGCCGACAGTGTACACGCAGAACTTTGAGCGAGCTTGCCCACTCGCTCATAT 599
| || | ||||||||| |||| |||||||| || || ||||| ||| ||||| |||
Sbjct 1168 A-CTTGTAAGCCGACACAGTACGTACAGAACTTCGACCGTGCTTGTCCATTCGCTTATAG 1226
Query 600 CTACGCCTATGATGATAACAATAGCACCGTT-ACATGC-CTAAACTCTACTGACTACGTC 657
|||| |||| | | ||| || || ||| || |||||| | ||| || ||||||||| |
Sbjct 1227 CTACCCCTACAACGGTAATAACAGTACC-TTCACATGCAC-AAATTCAACTGACTACATG 1284
Query 658 ATCAC 662
|||||
Sbjct 1285 ATCAC 1289
> Ahg494154 jgi|Araly1|494154|fgenesh2_kg.7__3587__AT5G38280.1
Length=2268
Score = 761 bits (412), Expect = 0.0
Identities = 920/1157 (80%), Gaps = 68/1157 (6%)
Strand=Plus/Plus
Query 1358 CAAAACATAATTC-TCTACGGAAGTTAAAAC-CGATACTTGGAGGCTCAGCAGCTTTAAT 1415
||||||| || || || | |||||||||||| | |||||||||| ||||||||||||||
Sbjct 892 CAAAACAAAAATCATC-ATGGAAGTTAAAACTC-ATACTTGGAGTCTCAGCAGCTTTAAC 949
Query 1416 TGTGTTGATCAGT-ATTGTTGTGATTGCGCTAGTAGTGAGAGCGAGGCATGCGAAAAGAA 1474
|| |||||| | ||||| || || || | |||||| | | | ||| | ||||
Sbjct 950 CATGATGATCA-TAATTGTGGT-CTT--AATAATTGTGAGAACAAAGAATGTG---AGAA 1002
Query 1475 AGAGTGAATT-GAACGA-CGAGAACATTGAAGCGGTTGTGATGTTGAAACGTTATAGCTT 1532
| |||| ||| ||| || | ||||| ||||||| |||| ||||||||||| ||||| ||
Sbjct 1003 ATAGTG-ATTGGAATGATC-AGAACGTTGAAGCAGTTGCAATGTTGAAACGATATAG-TT 1059
Query 1533 -TGA-AAAAGTCAAGAAGATGACAAACTCGTTTGAT-CATGTTATTGGGAAAGGAGGATT 1589
| | || |||||||||||||||||| || |||| | |||||| | || |||||||||||
Sbjct 1060 AT-ACAAGAGTCAAGAAGATGACAAAATCATTTG-TGCATGTTCTCGGAAAAGGAGGATT 1117
Query 1590 TGGAACTGTCTATAAAGGAAAACTACCCGATGCCAGCGGCCGAGATATTGCTCTGAAGAT 1649
|||||||||||| |||||||| |||||||| ||||| || ||| |||| |||||||
Sbjct 1118 TGGAACTGTCTACAAAGGAAAGTTACCCGAT---AGCGGTCGGGATGTTGCAGTGAAGAT 1174
Query 1650 CTTGAAAGAGTCAAAAGGGAATGGAGAAGAGTTCATCAATGAACTAGTTAGCATGAGTAG 1709
|||||| ||| || | |||||||| |||||||| ||||||||| ||| ||||||||||||
Sbjct 1175 CTTGAAGGAGACAGAGGGGAATGGGGAAGAGTTTATCAATGAAGTAGCTAGCATGAGTAG 1234
Query 1710 AGCTTCTCATGTTAACATCGTTTCTCTT-TTTGGATTTTGCTATGAAGGGAGCCAGAGAG 1768
| | |||||||| || ||||||||| || ||||||| || |||||| ||| | ||||||
Sbjct 1235 AACATCTCATGTCAATATCGTTTCT-TTGCTTGGATTCTGTTATGAAAGGAACAAGAGAG 1293
Query 1769 CTATTA-TCTACGAGTTCATGCCGAATGGATCCCTTGACAAGTTTATATCCGAGAATATG 1827
||| || |||| ||||||||||| ||||||||||| ||||||| ||| || | |||||||
Sbjct 1294 CTA-TAGTCTATGAGTTCATGCCTAATGGATCCCTCGACAAGTATATTTCTGCGAATATG 1352
Query 1828 TCAACAAAGATAGAGTGGAAAACATTATACAACATCGCGGTAGGTGT-TGCTCGTGGGCT 1886
||||| ||| | || ||| ||| |||||| |||| ||| ||||| | | || | || ||
Sbjct 1353 TCAACCAAGTTGGAATGGGAAAGATTATATGACATTGCGCTAGGTATCT-CTGGCGGCCT 1411
Query 1887 CGAGTACTTGCACAATAGTTGTGTATC-CAA-GATTGTGCATTTCGATATAAAGCCACAG 1944
||||| || |||||| | |||| || ||| |||||| |||||||| |||||||| |||
Sbjct 1412 AGAGTATTTACACAATCGCTGTG--TCACAAGGATTGTACATTTCGACATAAAGCCGCAG 1469
Query 1945 AATATACTCATAGAC-GAAGA-CTTATGCCCGAAGATTTCGGA-TTTCGGTCTTGCTAAG 2001
|| ||||| || ||| ||| | ||| ||||| |||||||| || ||| |||||||||||
Sbjct 1470 AACATACTGATGGACGGAA-ATCTT-TGCCCTAAGATTTCAGACTTT-GGTCTTGCTAAA 1526
Query 2002 CTATGCAAAAAGAAAGAAAGTATCATATCAATGTTAGACGCGAGAGGGACAGTAGGGTAC 2061
|| |||||||| || || || |||||||||||| || || |||||| || | || |||
Sbjct 1527 CTCTGCAAAAATAAGGAGAGCATCATATCAATGCTACACATGAGAGGAACCTTTGGATAC 1586
Query 2062 ATTGCTCCTGAAATGTTTTCCAAGAACTATGGAGGAGTTTCGCATAAGTCAGATGTGTAT 2121
|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||
Sbjct 1587 ATTGCTCCTGAAATGTTTTCCAAGAATTTTGGAGCAGTTTCGCATAAGTCAGATGTTTAT 1646
Query 2122 AGTTATGGAATGGTGGTTCTTGAGATGATTGGGGCAACGAAAAGAGAAGAAG-TTGAA-A 2179
|||||||||||||| |||||||||||||||| |||| ||| | |||| ||| ||||| |
Sbjct 1647 AGTTATGGAATGGTACTTCTTGAGATGATTGGAGCAAAGAATATAGAA-AAGGTTGAATA 1705
Query 2180 CTTCTGCGA-CCGATAAAAGTTCAATGTACTTTCCTGATTGGGTCTATGAGGATCTTGAG 2238
||||| || || | || ||||||||||||||||| |||||||||||| | ||| |||||
Sbjct 1706 -TTCTG-GATCCAACAATAGTTCAATGTACTTTCCAGATTGGGTCTATAAAGATTTTGAG 1763
Query 2239 AGGAAAGAAACCATGAG-ACTATTAGAAGATCA-TATAATCgaagaagaagaagaagaga 2296
||| | ||| || || | | || || ||| | ||||| | || |||||||| || |
Sbjct 1764 AGGGGACAAATCACAAGGATTTTTGGA-GAT-AGTATAA-CT--GATGAAGAAGA-GA-A 1816
Query 2297 agatagtgaagagaaT-GACATTAGTGGGTTTGTGGTGTATACAAACCAATCCATCTGAT 2355
| || | |||| ||| | ||| || | | | |||||||| || || |||||||||||
Sbjct 1817 A-ATTGCAAAGA-AATTGGTATTGGTTGCTCTATGGTGTATTCAGACGAATCCATCTGAC 1874
Query 2356 CGTCCACCAATGAGAAAAGTTGTTGAAATGTTAGAGGGCAGTCGTCTAGAAGCTCTACAG 2415
||||||||||||| ||||| |||||||||||||||| | || | ||| ||||| ||
Sbjct 1875 CGTCCACCAATGATCAAAGTCATTGAAATGTTAGAGGGAAATC-T--AGAGGCTCTCCAA 1931
Query 2416 GTTCCACCTAAGCCTCTCTTGAATTT-ACACGTAGTAACGGATTGG-GAAACTTCT-GAA 2472
||||||||||| ||||||||| ||| || || | ||||| || |||| |||| |||
Sbjct 1932 GTTCCACCTAATCCTCTCTTGT-TTTCACCCGCGGAAACGG-TTCCAGAAA-TTCTTGAA 1988
Query 2473 GATAGTCAACAGACTTC 2489
|||||| | |||||||
Sbjct 1989 GATAGTGATGAGACTTC 2005
> Ahg476148 jgi|Araly1|476148|fgenesh2_kg.2__1278__AT1G70250.1
Length=2416
Score = 647 bits (350), Expect = 0.0
Identities = 658/804 (82%), Gaps = 31/804 (4%)
Strand=Plus/Plus
Query 1377 GAAGTTAAAAC-CGATACTTGGAGGCTCAGCAGCTTTAATTGTGTTGATCAGTATTGTTG 1435
||||||||||| | |||||||||| ||| ||| ||| | ||||| ||| |||
Sbjct 1273 GAAGTTAAAACTC-ATACTTGGAGTTTCATCAGTTTTGGCTACAATGATC---ATTATTG 1328
Query 1436 TGATTGCGCT-AGTAGTGAGAGCGAGGCATGCGAAAAGAAAGAGTGAATT-GAACGACG- 1492
|||||| | | || || ||||| | | || || |||||||||| ||| ||| || |
Sbjct 1329 TGATTGTGGTAAG-CGTTAGAGCAAAGAATACG---AGAAAGAGTG-ATTGGAATGA-GA 1382
Query 1493 AGAACATTGAAGCGGTTGTGATGTTGAAACGTTAT-AGCTT-TGAAAAAGTCAAGAAGAT 1550
||||||| ||||| ||||| ||| |||| |||| | || || || | |||||||||||||
Sbjct 1383 AGAACATGGAAGCAGTTGTAATGATGAAGCGTT-TCAG-TTATGTACAAGTCAAGAAGAT 1440
Query 1551 GACAAACTCGTTTGATCATGTTATTGGGAAAGGAGGATTTGGAACTGTCTATAAAGGAAA 1610
||||||||| |||| ||||| |||||||||| |||||||||||||| |||||||| ||
Sbjct 1441 GACAAACTCATTTGCGAATGTTCTTGGGAAAGGGGGATTTGGAACTGTATATAAAGGGAA 1500
Query 1611 ACTACCCGATGCCAGCGGCCGAGATATTGCTCTGAAGATCTTGAAAGAGTCAAAAGGGAA 1670
||||||||| || |||||||| |||| ||||||||||||| |||||||| ||| |
Sbjct 1501 GTTACCCGATG---GCAGCCGAGATGTTGCAGTGAAGATCTTGAAGGAGTCAAACGGGGA 1557
Query 1671 TGGAGAAGAGTTCATCAATGAACTAGTTAGCATGAGTA-GAGCTTCTCATGTTAACATCG 1729
||| ||||| |||||||||||| ||| ||||||||||| || | ||||||| ||| || |
Sbjct 1558 TGGGGAAGACTTCATCAATGAAATAGCTAGCATGAGTAGGA-CATCTCATGCTAATATAG 1616
Query 1730 TTTCTCTTTTTGGATTTTGCTATGAAGGGAGCCAGAGAGCTATTATCTACGAGTTCATGC 1789
||||||| ||||||| || ||||||||||| ||| |||||| || || ||||||||||
Sbjct 1617 TTTCTCTGCTTGGATTCTGTTATGAAGGGAGAAAGAAAGCTATAATATATGAGTTCATGC 1676
Query 1790 CGAATGGATCCCTTGACAAGTTTATATCCGAGAATATGTCAACAAAGATAGAGTGGAAAA 1849
|||||||||||||||||||||| || || ||||| ||||| ||||||| || |||||||
Sbjct 1677 CGAATGGATCCCTTGACAAGTTCATCTCTGAGAAGATGTCGGCAAAGATGGAATGGAAAA 1736
Query 1850 CATTATACAACATCGCGGTAGGTGTTG-CTCGTGGGCTCGAGTACTTGCACA-ATAGTTG 1907
| ||||||||||| |||||||||| || ||| ||| || || || ||||| | | |||
Sbjct 1737 CGTTATACAACATTGCGGTAGGTG-TGTCTCATGGCCTAGAATATTTGCATAGCCA-TTG 1794
Query 1908 TGTATCCAA-GATTGTGCATTTCGATATAAAGCCACAGAATATACTCATAGACGAAGACT 1966
||||| ||| |||||| |||||||||||||||||||| || |||||||| || | ||| |
Sbjct 1795 TGTAT-CAAGGATTGTACATTTCGATATAAAGCCACAAAACATACTCATGGATGGAGATT 1853
Query 1967 TATGCCCGAAGATTTCGGATTTCGGTCTTGCTAAGCTATGCAAAAAGAAAGAAAGTATCA 2026
| ||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| ||||
Sbjct 1854 TTTGCCCTAAGATTTCGGATTTTGGTCTTGCTAAACTATGCAAAAATAATGAAAGCATCA 1913
Query 2027 TATCAATGTTAGACGCGAGAGGGACAG-TAGGGTACATTGCTCCTGAAATGTTTTCCAAG 2085
| |||||| || | || ||||| || | | ||||||||||| || ||| |||||||| ||
Sbjct 1914 TGTCAATGCTACATGCAAGAGGCAC-GATCGGGTACATTGCCCCAGAAGTGTTTTCCCAG 1972
Query 2086 AACTATGGAGGAGTTTCGCATAAGTCAGATGTGTATAGTTATGGAATGGTGGTTCTTGAG 2145
| | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1973 AGTTTTGGAGGAGTTTCTCATAAGTCGGATGTGTATAGTTATGGAATGGTGGTTCTTGAG 2032
Query 2146 ATGATTGGGGCAACGAAAAGAGAA 2169
|||||||| |||| ||| | ||||
Sbjct 2033 ATGATTGGAGCAAGGAATATAGAA 2056
Score = 167 bits (90), Expect = 4e-40
Identities = 132/152 (87%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 2281 gaagaagaagaagagaagatagtgaagagaaTGACATTAGTGGGTTTGTGGTGTATACAA 2340
|||||||||| ||||||||||| |||| |||| ||| |||||| |||||||||| ||
Sbjct 2114 GAAGAAGAAGGTGAGAAGATAGTAAAGAAAATGGTATTGGTGGGTCTGTGGTGTATTCAG 2173
Query 2341 ACCAATCCATCTGATCGTCCACCAATGAGAAAAGTTGTTGAAATGTTAGAGGGCAGTCGT 2400
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 2174 ACCAATCCATATGATCGTCCGCCAATGAGAAAAGTTGTTGAAATGTTAGAGGGAAGTC-T 2232
Query 2401 CTAGAAGCTCTACAGGTTCCACCTAAGCCTCT 2432
||| ||||| ||| |||||||||| |||||
Sbjct 2233 --AGAGGCTCTCCAGATTCCACCTAAACCTCT 2262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96596861320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5