BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18280.1

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946375 jgi|Araly1|946375|scaffold_702604.1                        741    0.0  


> Ahg946375 jgi|Araly1|946375|scaffold_702604.1
Length=478

 Score =  741 bits (401),  Expect = 0.0
 Identities = 452/477 (95%), Gaps = 2/477 (0%)
 Strand=Plus/Plus

Query  69   TAGCCTTCTCGTTAGTCCATGGAGGAGGAGAGTCTGGAACACCTTCTAATGCAGCCGCTA  128
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  3    TAGCCTTCTCGTTAGTCCATGGAGGAGGAGAGCCTGGAACACCTTCTAATGCAGCCGTTA  62

Query  129  CCCCGACTAGCCCAACCGAAGGATCCAGTGGTTCAAGTGGTTCAGCTCATGGACCTAATT  188
            |||| | ||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||||
Sbjct  63   CCCCAAGTAGTCCAACCGGAGGATCCAGCGGTTCAAGCGGTTCGGCTCATGGACCTAATT  122

Query  189  GGGGATATAGTTGGGGATGGGGTTCAGCCCCGGGAGGTGGTTATGGCTATGGTTCTGGTT  248
            |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct  123  GGGGATATAGTTGGGGATGGGGCTCATCCCCAGGAGGTGGTTATGGCTATGGTTCTGGTT  182

Query  249  CGGGTTCGTCACCAGATGGAGGAGGAAAAGGGGCTGGATTCGGGTTTGGTTCGGGGTCAG  308
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  183  CGGGTTCGTCACCAGATGGAGGAGGAAAAGGGTCTGGATTCGGGTTTGGTTCGGGTTCAG  242

Query  309  GTTCAGGAACTGGATTTGGGTCTGGCTCGGGAGGAGGAGGAGCCACAGACGGTGGTTCTG  368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GTTCAGGAACTGGATTTGGGTCTGGCTCGGGAGGAGGAGGAGCCACAGACGGTGGTTCTG  302

Query  369  GCCATGGAAGTGGGACCGGACACGCTGGTGAAGGCGGTGGCTCAGGAAGTGGAAATGGTG  428
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  303  GCCATGGAAGTGGGACCGGACACGCTGGTGAAGGCGGTGGCTCAGGCAGTGGAAATGGTG  362

Query  429  AAGGATCTCCTGGTCGTAGAGAGAGGAGCCAACACCGCTAAAAGAA-GTTTTCTTGTTAT  487
             ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  363  GAGGATCTCCAGGTCGTAGAGAGAGGAGCCAACACCGCTAAAAGAAAGCTTTCTTGTTAT  422

Query  488  TATTACTACCTTAACACAATCACACATGCGTAAGATGATAAGACTaaaagaaggaaa  544
            ||||||||||||||||||| || |||||| ||||| ||||||||| ||||||| |||
Sbjct  423  TATTACTACCTTAACACAACCATACATGCATAAGAGGATAAGACTCAAAGAAG-AAA  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27181639821


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5