BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18280.1 Length=738 Score E Sequences producing significant alignments: (Bits) Value Ahg946375 jgi|Araly1|946375|scaffold_702604.1 741 0.0 > Ahg946375 jgi|Araly1|946375|scaffold_702604.1 Length=478 Score = 741 bits (401), Expect = 0.0 Identities = 452/477 (95%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 69 TAGCCTTCTCGTTAGTCCATGGAGGAGGAGAGTCTGGAACACCTTCTAATGCAGCCGCTA 128 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 3 TAGCCTTCTCGTTAGTCCATGGAGGAGGAGAGCCTGGAACACCTTCTAATGCAGCCGTTA 62 Query 129 CCCCGACTAGCCCAACCGAAGGATCCAGTGGTTCAAGTGGTTCAGCTCATGGACCTAATT 188 |||| | ||| ||||||| ||||||||| |||||||| ||||| |||||||||||||||| Sbjct 63 CCCCAAGTAGTCCAACCGGAGGATCCAGCGGTTCAAGCGGTTCGGCTCATGGACCTAATT 122 Query 189 GGGGATATAGTTGGGGATGGGGTTCAGCCCCGGGAGGTGGTTATGGCTATGGTTCTGGTT 248 |||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| Sbjct 123 GGGGATATAGTTGGGGATGGGGCTCATCCCCAGGAGGTGGTTATGGCTATGGTTCTGGTT 182 Query 249 CGGGTTCGTCACCAGATGGAGGAGGAAAAGGGGCTGGATTCGGGTTTGGTTCGGGGTCAG 308 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 183 CGGGTTCGTCACCAGATGGAGGAGGAAAAGGGTCTGGATTCGGGTTTGGTTCGGGTTCAG 242 Query 309 GTTCAGGAACTGGATTTGGGTCTGGCTCGGGAGGAGGAGGAGCCACAGACGGTGGTTCTG 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 GTTCAGGAACTGGATTTGGGTCTGGCTCGGGAGGAGGAGGAGCCACAGACGGTGGTTCTG 302 Query 369 GCCATGGAAGTGGGACCGGACACGCTGGTGAAGGCGGTGGCTCAGGAAGTGGAAATGGTG 428 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 303 GCCATGGAAGTGGGACCGGACACGCTGGTGAAGGCGGTGGCTCAGGCAGTGGAAATGGTG 362 Query 429 AAGGATCTCCTGGTCGTAGAGAGAGGAGCCAACACCGCTAAAAGAA-GTTTTCTTGTTAT 487 ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 363 GAGGATCTCCAGGTCGTAGAGAGAGGAGCCAACACCGCTAAAAGAAAGCTTTCTTGTTAT 422 Query 488 TATTACTACCTTAACACAATCACACATGCGTAAGATGATAAGACTaaaagaaggaaa 544 ||||||||||||||||||| || |||||| ||||| ||||||||| ||||||| ||| Sbjct 423 TATTACTACCTTAACACAACCATACATGCATAAGAGGATAAGACTCAAAGAAG-AAA 478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27181639821 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5