BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18370.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493027 jgi|Araly1|493027|fgenesh2_kg.7__2460__AT4G18370.1 1546 0.0
> Ahg493027 jgi|Araly1|493027|fgenesh2_kg.7__2460__AT4G18370.1
Length=1183
Score = 1546 bits (837), Expect = 0.0
Identities = 1102/1223 (90%), Gaps = 46/1223 (4%)
Strand=Plus/Plus
Query 26 CCTTATCACCTCTGAGTGGAAAAAATTGAGTGAGCGCCATTGTAGG-AGAGCTTCGGgaa 84
||||||||||||||||||| || ||||||||| ||||||||||| ||||||||
Sbjct 1 CCTTATCACCTCTGAGTGG---AAGTTGAGTGAGAGCCATTGTAGGAAGAGCTTC----- 52
Query 85 agaagaagaagaagaagaagCCATGACCATGGCTCTTGCTTCTTCTAAAGCTTTTTCCTC 144
| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 53 -G-AG-A-AAGAAGAAGAAGCCATGACTATGGCTCTTGCTTCTTCTAAAGCTTTTTCCTC 108
Query 145 AATCTTCAATACTTTATCACCAATCAAT-CAGTCGAAATT-TGTGTTAGCTTGCTCTGGT 202
|||||| || ||||| | ||| ||||| || ||| |||| |||||||||||||||||||
Sbjct 109 AATCTTTTATGCTTTAACTCCATTCAATCCA-TCG-AATTATGTGTTAGCTTGCTCTGGT 166
Query 203 TCAAATCATGTAGACGTCATTGATCGGAGAAGAAGAATCATGATCTTTGGCTCGAGTTTG 262
|||||||||||| ||||| |||||||||||||||||||| ||||||| || |||||||||
Sbjct 167 TCAAATCATGTAAACGTCGTTGATCGGAGAAGAAGAATCGTGATCTTCGGTTCGAGTTTG 226
Query 263 GCTCTCACGTCGTCTCTGCTTGGTTCCAATCAACAGAGACTTCCGATGGAATCCGCAATC 322
|| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| || |||
Sbjct 227 GCGCTCGCGTCGTCTCTGATTGGTTCCAATCAACAGAGATTTCCGATGGAATCTGCGATC 286
Query 323 GCATTGGAGCAATTCaaagaaaaagaagaagagcttgaggaagaagaagagagaaaTGTC 382
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 287 GCATTGGAGCAATTGAAAGAAAAAGAAGATGAGCTTGAGGAAGAAGAAGAGAGAAATGTC 346
Query 383 AATCTCTTCCAGAAAACTTCGCCGTCTGTTGTTTACATTGAAGCTATTGAGCTTCCCAAA 442
|||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 347 AATCTCTTCCAGAAAACTTCTCCGTCTGTTGTCTACATAGAAGCCATTGAGCTGCCCAAA 406
Query 443 ACGTCTTCTGGTGATATACTCACTGATGAGGAAAATGGAAAGATCGAAGGGACAGGTTCA 502
|||||||||||||| || | | |||||||||||||| ||||||||||||||||||||||
Sbjct 407 ACGTCTTCTGGTGA-ATT-T-AGTGATGAGGAAAATGCAAAGATCGAAGGGACAGGTTCA 463
Query 503 GGCTTCGTTTGGGATAAGCTTGGTCACATTGTTACAAATTATCATGTTATTGCTAAGTTA 562
|| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 464 GGATTCGTGTGGGATAAGCTTGGTCACATTGTAACAAATTATCATGTCATTGCCAAGTTA 523
Query 563 GCTACTGATCAGTTTGGATTACAACGTTGTAAGGTGTCTCTAGTTGATGCTAAGGGAACA 622
||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 524 GCTACAGATCAATTTGGATTACAACGTTGTAAGGTTTCTCTAGTTGATGCTACGGGAACA 583
Query 623 AGATTTAGCAAGGAAGGGAAAATTGTGGGTCTTGATCCAGATAATGATCTAGCTGTGTTG 682
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 584 AGATTTAGCAAGGAAGGGAAAATTGTTGGTCTTGATCCAGATAATGATCTAGCTGTGTTG 643
Query 683 AAGATTGAAACTGAGGGACGTGAACTAAATCCTGTTGTTCTCGGTACCTCCAATGATCTA 742
||||||||||| ||||| | ||| |||| |||||||||||||||||||| |||||||||
Sbjct 644 AAGATTGAAACCGAGGGTCACGAATTAAAACCTGTTGTTCTCGGTACCTCTAATGATCTA 703
Query 743 CGCGTAGGTCAAAGTTGCTTTGCGATTGGGAATCCATATGGATATGAAAACACCTTGACA 802
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 704 CGCGTAGGTCAAAGTTGCTTTGCGATCGGGAATCCGTATGGATATGAAAACACCTTGACA 763
Query 803 ATAGGGGTAGTAAGTGGGTTGGGAAGAGAGATACCTTCACCTAATGGGAAGAGTATTTC- 861
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 764 ATTGGGGTAGTGAGTGGATTGGGAAGAGAGATACCTTCACCTAATGGTAAGAGTATT-CG 822
Query 862 AGAAGCTATACAAACCGATGCTGATATTAACTCAGGCAATTCTGGAGGGCCATTGCTTGA 921
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 823 AGAAGCTATACAAACCGATGCTGATATTAACTCAGGCAATTCAGGAGGGCCGTTGCTTGA 882
Query 922 TTCTTATGGCCATACCATAGGTGTGAACACTGCCACATTCACCCGAAAAGGGAGTGGTAT 981
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 883 TTCTTATGGCCATACCATAGGCGTGAACACTGCCACATTCACCCGAAAAGGGAGTGGTAT 942
Query 982 GTCTTCTGGTGTTAACTTTGCCATTCCCATTGACACAGTTGTCCGAACAGTTCCGTACCT 1041
|||||||||||| |||||||| |||||||| |||| || || |||||||| || |||||
Sbjct 943 GTCTTCTGGTGTGAACTTTGCTATTCCCATAAACACCGTAGTTCGAACAGTACCCTACCT 1002
Query 1042 CATTGTGTATGGAACAGCTTATAGAGACAGATTCTGAAGTAAACCAAACATCTTCTTTGC 1101
||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||
Sbjct 1003 CATTGTGTATGGAACAGCTTACAGAGACAGATTCTGA-GAAAAACAAACATCTTCTTTGC 1061
Query 1102 ATTTTGTCTATCACTTTGTCTATTGTTTGTTGATAATACAATTCGAAAAGTTTCAGACTT 1161
| | | ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1062 A--------A--A-TTT-TCTATTGTTTGTTGATAATACAATTTGAAAAGTTTCAGACTT 1109
Query 1162 GT--CTCTCTAAATGTAAATACAAAAAGTTCAAAAACAGTTTCCAATGTATACATATATC 1219
| ||||||||||||||||||||||| ||| || || | ||||||||||| |
Sbjct 1110 TTGGCTCTCTAAATGTAAATACAAAAA-TTCCAAT---GT----A-TGTATACATATTTT 1160
Query 1220 TTCACAAAAACATGTGAATCATT 1242
||||| |||||||||||||||||
Sbjct 1161 TTCACGAAAACATGTGAATCATT 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5