BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18390.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493022 jgi|Araly1|493022|fgenesh2_kg.7__2455__AT4G18390.1 2483 0.0
> Ahg493022 jgi|Araly1|493022|fgenesh2_kg.7__2455__AT4G18390.1
Length=1692
Score = 2483 bits (1344), Expect = 0.0
Identities = 1593/1707 (93%), Gaps = 41/1707 (2%)
Strand=Plus/Plus
Query 147 ACAGTGCTTTTGATGACTCTCTGCAACAAACAACAGCAGCTGCAGACAAAGCTTATACGA 206
|||||||||||||||| ||||||||| |||| |||| ||| ||||||||||||| ||||
Sbjct 1 ACAGTGCTTTTGATGA--CTCTGCAAC-AACAGCAGCTGCTTCAGACAAAGCTTAAACGA 57
Query 207 AGCTGTATCTACTGACTTTGATGGTGAAATATCAAAAACCCTAAATTAATTTTaaaaaaa 266
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 58 AGCTGTATCTACTGACTTTGATGGTGAAATATCAAAAACCCTAAATTTA-TTAAAAAAAA 116
Query 267 aaCAC-AttttttttcttcttttggtttttCCTCTGAGGGTATTCATCATCAATGCTTAC 325
||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 117 AACACAATTTTTTTT-TTTTTTTGGTTTTTCCTCTGAGGGTTTTCATCATCAATGCTTAC 175
Query 326 AAAGTACAGTGGGTaaacaaaac-aaaa-acaaaaacCCAtttttttCTC-CTTCTTTAA 382
||||||||||||||||||||||| |||| | ||||||| ||||||||| | |||||||||
Sbjct 176 AAAGTACAGTGGGTAAACAAAACAAAAATATAAAAACCAATTTTTTTC-CACTTCTTTAA 234
Query 383 ATCCCAAACCAACCCTAAAGTTTTGATTTTTAATTTTGGGGGTAACCaa-aaaaaaaCAA 441
||||||||||||||||||||||| ||||||||| |||||||| |||||| | ||||| ||
Sbjct 235 ATCCCAAACCAACCCTAAAGTTTCGATTTTTAAATTTGGGGGAAACCAACAGAAAAA-AA 293
Query 442 AACCCTAAttttttttCTTTAGTGATGAGATTATTGGTGATGATGAAATGATTGGAGATC 501
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 294 AACCCTAA-TTTTTTTCTTTGGTCATGAGATTATTGGTGATGATGAAATGATTGGAGATC 352
Query 502 TAATGAAGAATAACAACAATGGCGACGTTGTGGATAAC-GAAGTGAACAACCGGTTAAGC 560
||||||||||| |||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 353 TAATGAAGAAT---AACAATGGCGACGTTGTGGATAGCGGAA-ACAACAACCGGTTAAGC 408
Query 561 CGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCACGAGCTTCCGGTGGTAAAGAT 620
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 409 CGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCTCGAGCTTCCGGTGGTAAAGAT 468
Query 621 CGACACAGCAAAGTCTTGACTTCTAAAGGACCACGTGACCGTCGTGTCCGGTTATCAGTC 680
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 469 CGACACAGCAAAGTCTTGACTTCGAAAGGTCCACGTGACCGGCGTGTCCGGTTATCAGTC 528
Query 681 TCCACCGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTATGATCAACCTAGCAAA 740
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 529 TCCACTGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTACGATCAACCGAGCAAA 588
Query 741 GCTGTTGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAAC 800
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GCTGTGGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAAC 648
Query 801 AACACTCATTTTCCGACCGATGACGAGAATCACCAGAATCAGACATT---AACAACAGTT 857
|||||| ||||||||||||||||||||||||| ||||| |||||||| || |||||||
Sbjct 649 AACACTAATTTTCCGACCGATGACGAGAATCATCAGAACCAGACATTAGCAAGAACAGTT 708
Query 858 GCTGCT---AATTCCTTGTCTAAATCTGCTTGTAGTAGCAATTCAGACACGAGCAAGAAC 914
|||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 709 GCTGCTGCGAATTCGTTGTCTAAATCGGCTTGTAGTAGTAATTCAGACACGAGCAAGAAC 768
Query 915 TCTTCTGGTTTGTCTTTATCAAGATCGgagcttagagataaagctagagagagggctaga 974
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 769 TCTTCTGGTTTGTCTTTATCAAGATCGGAGCTAAGAGATAAAGCTAGAGAGAGAGCTAGA 828
Query 975 gagagaacagctaaagagaccaaggaaagagaTCATAACCACA---CTTCGTTTACGGAT 1031
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 829 GAGAGAACAGCTAAAGAGACCAAGGAGAGAGATCATAACCACACTTCTTCGTTTACCGAT 888
Query 1032 TTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCT 948
Query 1092 TCTTCATCTCCAATGGAGTATTTCAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACC 1151
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 TCTTCATCTCCAATGGAGTATTTTAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACC 1008
Query 1152 CATTTCCCTATTTCAACAAATTctcatcctttctcatcaatctccgatcatcatcatcat 1211
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 CATTTCCCGATTTCAACAAATTCTCATCCTTTCTCATCAATCTCCGATCACCATCATCAT 1068
Query 1212 catcctcatcatcagcatcaAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCA 1271
|||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CATCATCATC--CA-CACCAAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCA 1125
Query 1272 GAATCCAACGGCGGAGCATTCAATCTTGATTTTAATATGTCAACACCCTCCGGCGCCGGA 1331
| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1126 GGATCCAACGGCGGAGCATTCAATCTTGATTTCAACATGTCGACACCCTCCGGCGCCGGA 1185
Query 1332 GCTGCCGTCTCCGCCGCATCAGGTGGTGGCTTCAGTGGTTTCAACAGGGGGACCCTTCAG 1391
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1186 GCTGCCGTCTCCGCCGCATCAGGTGGTGGGTTCAGTGGTTTCAACAGGGGGACCCTTCAG 1245
Query 1392 TCCAATTCAAC--A--A--ATCAGCATCAGTCATTCCTCGCTAATCTACAGAGGTTTCCA 1445
||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1246 TCCAATTCAACAAATCATCATCAGCATCAGTCATTTCTCGCTAATCTACAGAGGTTTCCA 1305
Query 1446 ACATCAGAAAGTGGAGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCAC 1505
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TCATCAGAAAATGGTGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCAC 1365
Query 1506 CACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGAACAT 1565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1366 CACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGACCAT 1425
Query 1566 AAGGGTAAAGGCAAGAACTGATGATATTAATTATTGCATCTTTGGTTTTGTTCAAATGCT 1625
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1426 AAAGGTAAAGGCAAGAACTGATGATATTAATTATTGCATCTTTGGTTTAATTCAGATCCT 1485
Query 1626 CATTTTGTATGTTTA-TCTTTGGTTTATTTCAAAACAAATGTTAATCTCTTTCGTTGTCT 1684
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1486 CATTTTGTATGTTTAATTTTTGGTTTATTTCAAAACAAATGTTAATCTCTTTTGTTGTCT 1545
Query 1685 GATGTGTGTTAGGGTTTTGTTTT---A-TGTATTGAGGGTCTTTGGAAATCTTTTTGCAT 1740
||| |||||||||||||| |||| | ||| |||||||||||| ||||||| || ||||
Sbjct 1546 GATCTGTGTTAGGGTTTTTTTTTTGTAATGTTTTGAGGGTCTTTTGAAATCTGTTAGCAT 1605
Query 1741 TGTGCTTGTAATGTTGTATTTGTGATAATAGCATTTTGTTTGTGAGTTTATAATTGAATT 1800
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1606 TGTATTTGTAATGTTGTATTTGTGATAATACCATTTTGTTTGTGAGTTTATAATTCAATT 1665
Query 1801 TTTGAATGTTATTTTTGCCATGTAATT 1827
||||| ||||||||||| |||| ||||
Sbjct 1666 TTTGAGTGTTATTTTTGGCATGAAATT 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5