BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18480.1 Length=1608 Score E Sequences producing significant alignments: (Bits) Value Ahg946346 jgi|Araly1|946346|scaffold_702575.1 2311 0.0 Ahg494386 jgi|Araly1|494386|fgenesh2_kg.8__202__AT5G45930.1 1020 0.0 > Ahg946346 jgi|Araly1|946346|scaffold_702575.1 Length=1423 Score = 2311 bits (1251), Expect = 0.0 Identities = 1370/1428 (96%), Gaps = 6/1428 (0%) Strand=Plus/Plus Query 68 AAGCCAATCAGAAGCTGAGTAA-ACTCTAAGCTCACACAAAAATGGCGtctcttcttgga 126 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCCAATCAGAAGCTGAGTAATACTCTAAGCTCACACAAAAATGGCGTCTCTTCTTGGA 60 Query 127 acatcttcttctgcaatctgggcttctccttcactctcttctccttcctcaaaaccttcc 186 |||||||||||||| ||||||||||||||||| ||||||||| ||||||| | |||||| Sbjct 61 ACATCTTCTTCTGCTATCTGGGCTTCTCCTTCTCTCTCTTCTTCTTCCTCTACACCTTCG 120 Query 187 tcctccCCCATTTGCTTCAGGCCAGGAAAATTGTTTGGAAGCAAGTTAAATGCAGGAATC 246 | || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 ACTTCTCCCATTTGCTTCAGGCCAGGGAAATTGTTTGGAAGCAAGTTAAATGCAGGAATC 180 Query 247 CAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAGCCACT 306 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 CAGATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCTGTTATGAATGTAGCCACA 240 Query 307 GAAATCAACTCTACTGAACAAGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCG 366 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAATCAACTCTACTGAAC-A--AGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCG 297 Query 367 GTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAAT 426 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 298 GTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTTATGTCTTCTGTTGAAT 357 Query 427 GTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCT 486 || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 358 GTGATTGATCCAAAGATTGGTGGTGTGATGATTATGGGAGATAGAGGAACCGGAAAATCT 417 Query 487 ACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCG 546 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 418 ACAACTGTTAGATCATTAGTTGATCTGTTACCAGAGATTAATGTAGTTGCAGGTGACCCG 477 Query 547 TATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGTAAGAGAGAGAGTTGAG 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGTAAGAGAGAGAGTTGAG 537 Query 607 AAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGT 666 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 538 AAAGGAGAGAAAGTTCCGGTTATTGCGACTAAGATTAATATGGTTGATCTTCCGTTGGGT 597 Query 667 GCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGCTTTGACAGAAGGTGTA 726 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 598 GCAACAGAAGATAGAGTTTGTGGAACAATCGATATCGAAAAGGCTTTGACAGAAGGTGTA 657 Query 727 AAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAA 786 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 658 AAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTCTATGTTGATGAA 717 Query 787 GTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGG 846 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 718 GTTAATCTTTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCCGGTTGG 777 Query 847 AATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGGCGAGGTTTATCTTGATCGGT 906 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||| Sbjct 778 AATACGGTTGAGAGAGAAGGAATTTCGATTTCCCACCCGGCGAGGTTTATCTTAATTGGT 837 Query 907 TCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCAT 966 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 838 TCGGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGAATGCAT 897 Query 967 GCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCT 1026 || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 898 GCGCAAGTAGGGACGGTTAGAGATGCTGATTTACGAGTCAAGATTGTCGAAGAGAGAGCT 957 Query 1027 CGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGCTT 1086 |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 958 CGTTTCGATAGTGACCCAAAGGATTTCCGTGAAACTTACAAAACTGAGCAGGACAAGCTT 1017 Query 1087 CAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTG 1146 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1018 CAAGACCAGATTTCAACTGCTAGGGCAAATCTTTCCTCGGTTCAGATTGATCGGGAATTG 1077 Query 1147 AAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAATGTTGATGGGTTGAGAGGAGACATA 1206 ||||||||||||||||| || ||||||||||||||||| || ||||||||||| |||||| Sbjct 1078 AAGGTGAAGATCTCTAGGGTATGTTCAGAGCTCAATGTCGACGGGTTGAGAGGGGACATA 1137 Query 1207 GTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCA 1266 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1138 GTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGGAAAGATCGAGTAACTCCA 1197 Query 1267 GATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTG 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 GATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTG 1257 Query 1327 GAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAGCTGAATA 1386 |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1258 GAATCTATCGATTCGGGAGTTCTAGTTTCCGAGAAGTTTGCCGAGATTTTCAGCTGAATA 1317 Query 1387 GGAGATTCGATTCTGTGATCATTTTTCTTTAACTTTTTCTACTCTGTAAACGGTGAGAAG 1446 |||||||||||||||||||| |||| ||| ||||||| ||||||||||||| |||||||| Sbjct 1318 GGAGATTCGATTCTGTGATCCTTTT-CTT-AACTTTTCCTACTCTGTAAACAGTGAGAAG 1375 Query 1447 AACCAAAACTATAAACAGGCAAATCTGATTGAATATAGAGTCTATGCT 1494 ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 AACAAAAACTATAAACAGGCAAATCTGATTGAATATAGAGTCTATGCT 1423 > Ahg494386 jgi|Araly1|494386|fgenesh2_kg.8__202__AT5G45930.1 Length=1361 Score = 1020 bits (552), Expect = 0.0 Identities = 1060/1299 (82%), Gaps = 59/1299 (5%) Strand=Plus/Plus Query 102 CAC-AAAAATGGCGtctcttcttggaacatcttcttctgcaatctgggcttctccttc-a 159 ||| || ||||||||||||||| ||| ||||| ||||| |||||| ||| || || Sbjct 66 CACTAACAATGGCGTCTCTTCTCGGAGCATCTCCTTCTTCAATCTTCACTT-GCCCTCGT 124 Query 160 ctctcttctccttcctcaaaaccttcct-cctccCCCATTTGCTTCAGG-CCA-GGAAAA 216 || |||||||||||||||| | ||| || |||||| | |||||| || ||| ||| || Sbjct 125 CTTTCTTCTCCTTCCTCAACATCTT-CTATCTCCCCTGTCTGCTTC-GGACCAGGGAGAA 182 Query 217 TTGTTTGGAAGCAAGTTAAATGCAGGAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGT 276 || | | | | ||| ||| | ||| | ||| |||||||||||||| |||||| Sbjct 183 TT-TGT-G--G-AAG---AAT-C--CAATTC-AAT----CCAAAGAAGAACAGATCTCGT 226 Query 277 TACCATGTTTCGGTTATGAATGTAGCCACTGAAATCAACTCTACTGAACAAGTAGTAGGG 336 ||||||||||| ||||||||||| || || || ||||||| | |||||||| | | | Sbjct 227 TACCATGTTTCTGTTATGAATGTCGCTACAGAGATCAACTATGTTGAACAAG--G-AAAG 283 Query 337 AAGTTTGATTCAAA-GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCA 395 |||||||||||||| ||| |||||||| ||||||||||||||||| ||||| || || || Sbjct 284 AAGTTTGATTCAAAGGAA-AGTGCGAGGCCGGTTTATCCATTTGCTGCTATTGTTGGACA 342 Query 396 AGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTAT 455 ||||||||||||| |||| |||||||| ||||| ||||| || |||||||| ||||| || Sbjct 343 AGATGAGATGAAGCTATGCCTTTTGTTAAATGTGATTGACCCGAAGATTGGCGGTGTGAT 402 Query 456 GATTATGGGAGATAGAGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTG-T 514 ||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| || | Sbjct 403 GATAATGGGAGATAGAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCT 462 Query 515 TACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGT 574 | |||||||| | || ||||| ||||| ||||||||||| || |||| |||||| |||| Sbjct 463 T-CCTGAGATCACGGTTGTTGCTGGTGATCCGTATAACTCAGACCCGAGAGATCCCGAGT 521 Query 575 TTATGGGTGTTGAAGTAAGAGAGAGAGTTGAGAAA-GGAGAGCAAGTT-CCTGTTATTGC 632 |||||| |||||||| |||| |||| | ||| ||||| ||| || || ||||| | Sbjct 522 GTATGGGAAAGGAAGTAAGGGAGAAAGTTCA-AAAGGGAGAACAA-TTGCCGGTTATCGA 579 Query 633 GACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAAC 692 || || || |||||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 580 AACCAAAATCAATATGGTTGATCTTCCTTTAGGTGCTACGGAAGATAGAGTTTGCGGAAC 639 Query 693 CATCGATATCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGC 752 || ||||||||||| || || || |||||||| || || ||||||||||| | | || Sbjct 640 TATTGATATCGAAAAAGCCTTAACTGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGC 699 Query 753 TAAAGCTAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGT 812 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 700 TAAAGCCAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTAGT 759 Query 813 TGATGTTCTT-TTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTT 871 |||||||||| ||| |||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct 760 TGATGTTCTTCTTG-ATTCTGCTGCATCGGGTTGGAACACTGTTGAAAGAGAAGGGATTT 818 Query 872 CGATTTCTCACCCGGCGAGGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGC 931 ||||||||||||| || |||||||| | || |||||||||||||| ||||||||||||| Sbjct 819 CGATTTCTCACCCTGCTCGGTTTATCCTAATTGGTTCAGGAAATCCTGAAGAAGGAGAGC 878 Query 932 TTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATG 991 |||| ||||||||||||||| ||||||||||||| || ||||||||||| ||||| || | Sbjct 879 TTAGACCACAGCTTCTTGATAGGTTTGGTATGCACGCGCAAGTAGGGACAGTTAGGGACG 938 Query 992 CTGATTTACGGGTCAAGATTGTTGAAGAGA-GAGCTCGTTTCGATAGTAACCCAAAGGA- 1049 | || || | ||||||||||||||||| | |||||||||| ||||||||||||||||| Sbjct 939 CCGAGCTAAGAGTCAAGATTGTTGAAGA-ACGAGCTCGTTTTGATAGTAACCCAAAGGAG 997 Query 1050 TTTCCGTGACA-CTTA-CAAAACCGAGCAGGAC--AAGCTTCAAGACCAGATTTCAACTG 1105 |||| | || | |||| ||| | || || || ||||||||||| |||||| |||||| Sbjct 998 TTTC-GAGA-ATCTTATCAAG-CAGAACA--ACTGAAGCTTCAAGAGCAGATTACAACTG 1052 Query 1106 CTAGG-GCAAACCTTTCCT-CGGTTCAGATTGAT-AGGGAATTGAAGGTGAAGATCTCTA 1162 | || |||| | |||| | | |||||||||||| | | | ||||| ||||||||||||| Sbjct 1053 CAAGAAGCAATC-TTTC-TGCAGTTCAGATTGATCAAG-ATTTGAAAGTGAAGATCTCTA 1109 Query 1163 GAGTT-TGTTCAGAGCTCAATGTTGATGGGTTGAGAGGAGACATAGTGACTAA-CAGAGC 1220 || | ||| | ||||| | ||||| || |||||||||||||| |||| ||| |||||| Sbjct 1110 -AGGTCTGTGCTGAGCTGGACGTTGACGGATTGAGAGGAGACATGGTGA-TAAACAGAGC 1167 Query 1221 AGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAAC 1280 || | ||||||||| || ||| |||||| ||||| ||| || | || ||||||| | Sbjct 1168 GGCTAGAGCACTTGCGGCACTCCAAGGAAGAGATCAAGTTACAGCTGAAGATGTTGGTAT 1227 Query 1281 CGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATTGATTC 1340 ||||| || ||||||||| | ||| | || || ||||||||| |||| ||||| ||||| Sbjct 1228 TGTTATACCGAACTGCTTACGACACAGACTCAGAAAAGATCCATTGGAGTCTATGGATTC 1287 Query 1341 AGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAG 1379 ||| |||| ||| ||||||||||| |||| ||||||| Sbjct 1288 GGGAATTCTCGTTACCGAGAAGTTCTACGAGGTTTTCAG 1326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60258767590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5