BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18530.1 Length=1796 Score E Sequences producing significant alignments: (Bits) Value Ahg493006 jgi|Araly1|493006|fgenesh2_kg.7__2439__AT4G18530.1 1059 0.0 Ahg890334 jgi|Araly1|890334|Al_scaffold_0007_2320 592 4e-168 > Ahg493006 jgi|Araly1|493006|fgenesh2_kg.7__2439__AT4G18530.1 Length=1526 Score = 1059 bits (573), Expect = 0.0 Identities = 675/723 (93%), Gaps = 12/723 (2%) Strand=Plus/Plus Query 1019 GATATCTATCTATTGTCAAAGAAGAGGGGCTTGAGATATCGCAACCTGCTCTTGACACTT 1078 |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||| Sbjct 806 GATACCTATCTATTGTCAAAGAAGAGGGGCTTCAGATATCACAACCCGCTCTCGACACTT 865 Query 1079 CAAAATCAGAAGTGCATCATCCTATAACCGCTCGTCGaaaaaaaTCAAAAGTTCATAGAA 1138 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 866 CAAAATCAGAAGTGCATCATCCTATAACCGCTCGTCGAAAAAAATCAAAATTTCATAGAA 925 Query 1139 GAATGTATAAATACAAAGGTAGCGGGCGATGTGATGACCATAGCACCAATCCTCCTTGCA 1198 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 926 GGATGTATAAATACAAAGGTAGCGGGCGATGTGATGACCATAGCACCAATCCTCCCTGCA 985 Query 1199 TCGGGTGGGTGGAAATGATGGCACCTGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGT 1258 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 986 TCGGGTGGGTAGAAATGATGGCACCTGTTTTCTCTAGAGCAGCATGGAGATGTTCTTGGT 1045 Query 1259 ATATGATTCAGAATGATTTGATCCATGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTG 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 ATATGATTCAGAATGATTTGATCCATGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTG 1105 Query 1319 CTCAAGGTGACCGAAAGAAAAATGTCGGTGTTGTTGATGCGGAGTACATAATTCATTATG 1378 |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| | Sbjct 1106 CTCAAGGTGATCGAAAGAAAAATGTTGGTGTTGTTGATGCGGAGTACATTATTCATTACG 1165 Query 1379 GTCTTCCAACGCTCGGTGTGGTTGAAACCGCTTCAAGCGCTTTGCGGAATGAGACAGACT 1438 ||||||| ||||| |||||||||||||| ||||||||| |||||||||| ||||||||| Sbjct 1166 GTCTTCCTACGCTAGGTGTGGTTGAAACAGCTTCAAGCTCTTTGCGGAACGAGACAGACC 1225 Query 1439 CGAAATCAACGGAATCATTAGAGTCTCGTGAAGTGGATAATAGACCAGAAGTGAGGATGA 1498 |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| Sbjct 1226 CGAAATCAACGGAATCATCAGAGTCTCGTGAAGTGGACAATAGACCAGAAGTTAGGATGA 1285 Query 1499 AATCATTTGTGGAGATGAAGAGATTCAAGGAACGTTGGAAGAAAGCTGTGAGGGATGATA 1558 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1286 AATCATTTGTAGAGATGAAGAGATTCAAGGAACGTTGGAAGAAAGCTGTGAGAGATGATA 1345 Query 1559 CATGTTGGGTTGATCCGTATTGAAATCC-GAGCGGTTTAAGTAAACCGAATCAAACCGGA 1617 ||||||||| |||||||||| ||| || ||| ||||||||||||||||| ||||||||| Sbjct 1346 GATGTTGGGTCGATCCGTATTAAAA-CCTGAGGGGTTTAAGTAAACCGAACCAAACCGGA 1404 Query 1618 TTCTTTTCCTTGTTGAGTG-TG----CTTTGTGGTC---C-ATTGTATACCATTATTTTG 1668 || |||||||||||||||| || |||||||||| | ||||||||||||||||| | Sbjct 1405 TTATTTTCCTTGTTGAGTGGTGAGTGCTTTGTGGTCGGTCCATTGTATACCATTATTT-G 1463 Query 1669 GTACATAGATTTTGTTTTACTTCGAGAAAAATTAGTGTATTTATGTGTTTTATGGACCAC 1728 ||||||| |||||||||||||| || |||||| ||||||||||||||||| ||||||||| Sbjct 1464 GTACATAAATTTTGTTTTACTTGGAAAAAAATCAGTGTATTTATGTGTTTAATGGACCAC 1523 Query 1729 AGT 1731 ||| Sbjct 1524 AGT 1526 Score = 652 bits (353), Expect = 0.0 Identities = 513/584 (88%), Gaps = 36/584 (6%) Strand=Plus/Plus Query 51 AAAACCCTTGAATTTTGCTACACGATCTCTGAAACGTGTCTCTTTGACTGACTTCAATCT 110 |||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 39 AAAACCCTTGAA-ATTGCTACACGATCTCAGAAACGTGTCTC--T--CTGACTTCAATCT 93 Query 111 TCTTTATCACTTACCGTTTCTGGGTTTTATGAAGCAACTGAGCTAATAAAAAGCTTCTTC 170 |||| |||| || |||||||||| ||||||||||| ||||||| | ||||||||| || Sbjct 94 TCTTCATCAATTCCCGTTTCTGGATTTTATGAAGCCACTGAGC---T-AAAAGCTTC-TC 148 Query 171 TTAGACT--CGGAA-GAAGATAA--AAAACAGAATCTTTATTGTTTAAAGCTTCCAAATT 225 || | | || || | | || ||||||||||||||||| ||||||||||| ||||| Sbjct 149 TTTGTTTAACGAAACTCACACAAGGAAAACAGAATCTTTATTTTTTAAAGCTTCGAAATT 208 Query 226 CGAGAAGAGAATTTGAAACGACCAAGTTCAGG--ATATTCG----TT--TCTTCGTCTAC 277 ||||||||||||| |||||||||||||| || ||||||| || ||||| ||||| Sbjct 209 TGAGAAGAGAATTTAAAACGACCAAGTTCGGGATATATTCGTTTCTTCATCTTCTTCTAC 268 Query 278 TTTGGTCTCTTCCTCTTCTCTTTCGAAAAGGGTTTA-T-TCTGTCTTAAAAGAAACCTTT 335 ||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||| Sbjct 269 TTTGGTCTCTTCCTCTTCTCTCTCGAAAAGGGTTTATTCTCTGTCACAAAAGAAACCTTT 328 Query 336 TTGA--GAGGGTaaaaaaaGCTTCAATTTTCAGAGAAACACAAAAGGCAGAAACAGAG-- 391 |||| || || ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 329 TTGAGGGAAGG-AAAAAAAGCTTCAATTTTCAGAGAAACCCAAAAGGCAGAAACAGAGAT 387 Query 392 A--AAAA-C-AAATCATCTAAT-TCATGAAACAGGGTTCAATGAATAGATCGTGTCTCTG 446 | |||| | |||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 388 ATCAAAATCAAAATCACCTAATAT-ATGAAACAGGGTTCAATGAATAGATCGTGTCTCTG 446 Query 447 TAGTGTCTTAATCACCACTGCTCTGATTTGTGGTGCTTACTTCATTTGCAATGCTTATCT 506 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 447 CAGTGTCTTAATCACCACTGCTCTGATTTGTGGTGCTTACTTCATTGGCAATGCTTATCT 506 Query 507 TGCTAAAGACTTTAAAGAGAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAG 566 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 507 TGCTAAAGACTTTAAAGAGAAATTGCTAAAGTGGGAAATCACTGATAAGATGCATAACAT 566 Query 567 TACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAGA 610 |||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 567 TACTGATAAGTTGCAGAATGCAACATCAACCAGTACATGCCAGA 610 Score = 137 bits (74), Expect = 2e-31 Identities = 85/90 (94%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 713 AGAGAAGGCCTAACCATTCGATGAGTTTGTTAGCCATGGCGGTCGGTATCAAGCAAAAGG 772 |||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 608 AGAGAAGGCCGAACCATTCGATGAGTTTGTTAGCCATGGCGGTTGGAATCAAGCAGAAGG 667 Query 773 AGCTAGTTAACAAAGTTATCCAAAAG-TTT 801 |||||||||||||||||||||||||| ||| Sbjct 668 AGCTAGTTAACAAAGTTATCCAAAAGATTT 697 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 958 GAGTACGAGTATATATTTCTTTGGGACGAAGATCTTGGTGT 998 ||||| ||||||||||||||||||||||||||||||||||| Sbjct 763 GAGTATGAGTATATATTTCTTTGGGACGAAGATCTTGGTGT 803 > Ahg890334 jgi|Araly1|890334|Al_scaffold_0007_2320 Length=561 Score = 592 bits (320), Expect = 4e-168 Identities = 385/417 (92%), Gaps = 2/417 (0%) Strand=Plus/Plus Query 1164 GCGATGTGATGACCATAGCACCAATCCTCCTTGCATCGGGTGGGTGGAAATGATGGCACC 1223 ||||||||||||| |||||||||||||||| |||| |||| || |||||||||||||| Sbjct 144 GCGATGTGATGACAATAGCACCAATCCTCCCTGCAAATGGTGTGTAGAAATGATGGCACC 203 Query 1224 TGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGTATATGATTCAGAATGATTTGATCCA 1283 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 TGTTTTCTCTAGAGAAGCATGGAGATGTTCTTGGTATATGATTCAGAATGATTTGATCCA 263 Query 1284 TGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTGCTCAAGGTGACCGAAAGAAAAATGT 1343 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 264 TGCTTGGGGTCTGGATACACAGCTTGGTTATTGTGCTCAAGGTGATCGAAAGAAAAATGT 323 Query 1344 CGGTGTTGTTGATGCGGAGTACATAATTCATTATGGTCTTCCAACGCTCGGTGTGGTTGA 1403 |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 324 TGGTGTTGTCGATGTGGAGTACATAATTCATTACGGTCTTCCAACGCTCGGTGTGGTTGA 383 Query 1404 AACCGCTTCAAGCGCTTTGCGGAATGAGACAGACTCGAAATCAACGGAATCATTAGAGTC 1463 ||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||| Sbjct 384 AACCGCTTCAAGCTCCTCGCGGAATGAGACAGACCCGAAATCAACGGAATCATTAGAGTC 443 Query 1464 TCGTGAAGTGGATAATAGACCAGAAGTGAGGATGAAATCATT-TGTGGAGATGAAGAGAT 1522 |||| |||||||| ||||||||||||||||||||||||| || ||| || ||||||| || Sbjct 444 TCGTAAAGTGGATTATAGACCAGAAGTGAGGATGAAATC-TTCTGTAGATATGAAGACAT 502 Query 1523 TCAAGGAACGTTGGAAGAAAGCTGTGAGGGATGATACATGTTGGGTTGATCCGTATT 1579 || ||||||||||| ||||||||||||||||||| ||||||||| |||||||||| Sbjct 503 TCGTTGAACGTTGGAATAAAGCTGTGAGGGATGATAGATGTTGGGTCGATCCGTATT 559 Score = 126 bits (68), Expect = 5e-28 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 713 AGAGAAGGCCTAACCATTCGATGAGTTTGTTAGCCATGGCGGTCGGTATCAAGCAAAAGG 772 ||| |||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||||| Sbjct 53 AGAAAAGGCCAAACCATTCGATAAGTTTTTTAGCCATGGCAGTCGGAATCAAGCAAAAGG 112 Query 773 AGCTAGTTAACAAAGTTATCCAAAAG 798 |||||||||||||||||||||||||| Sbjct 113 AGCTAGTTAACAAAGTTATCCAAAAG 138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67419733650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5