BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18630.1 Length=1749 Score E Sequences producing significant alignments: (Bits) Value Ahg492995 jgi|Araly1|492995|fgenesh2_kg.7__2428__AT4G18630.1 2362 0.0 > Ahg492995 jgi|Araly1|492995|fgenesh2_kg.7__2428__AT4G18630.1 Length=1708 Score = 2362 bits (1279), Expect = 0.0 Identities = 1543/1666 (93%), Gaps = 35/1666 (2%) Strand=Plus/Plus Query 50 ACACAAAACAAAGACTCTGTTTGTTATTCTTCCTTCTTTTTGTTTTCAAGAATGGAGGGA 109 |||||||||| ||||||||||| ||| || ||| ||| | |||| ||||||||||||| Sbjct 33 ACACAAAACAGAGACTCTGTTTCTTA---TT-CTT-TTTCT-TTTTAAAGAATGGAGGGA 86 Query 110 AAGAAATTGAATTTGTATGCTCCATTACCATCAATCAGGCGAATTCCGTCTATGATAGAG 169 | ||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 87 AGGAAATTGAATTTGTATGCTCCATTACCATCAATAAGACGGATTCCGTCTATGATAGAG 146 Query 170 CGTTCAAGTGAGTTAGAGAATAAGAAGACGACGATTACAAGACCAGAGCTTCGATCATGT 229 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 147 CGTTCCGGTGAGTTAGAGAACAAGAAGACGACGATTACAAGACCAGAGCTTCGATCATGT 206 Query 230 CCGAGCACAAAACAAGAAACGCCGGTTTTTGTATTACCAGACCAGAGCTTTGATCATCTC 289 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 207 CCAAGCACAAAACAAGAAACGCCGGTTTTTGTATTACCAGACCAGAGCTTTGATCATCTC 266 Query 290 ACAGAACCAGCTTCAATTCCTTTTATGTGGGAACAAATCCCTGGAAAACCAAAAGATGAC 349 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 267 ACAGAACCAGCTTCAATTCCTTTTATGTGGGAACAAATCCCAGGAAAACCAAAAGATGAC 326 Query 350 ATGGCTACATTGATTCAAGAGTCAGGTCTACTAGAAACCGATGATGAAGAAGAAGACGAA 409 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || Sbjct 327 ATGGCTACATTGATTCAAGAATCAGGTTTACTAGAAACCGATGATGAAGAAGAAGAAGAC 386 Query 410 GTAGATGAAGATTTGGATACGGTTTCTTCAAATGTAAGCTTCTCTGTTAACTGCAGCACA 469 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 G-A-A-GAAGATTTGGATACGGTTTCTTCAAATGTAAGCTTCTCTGTTAACTGCAGCACG 443 Query 470 AGTGGAGTTAGCGAAATCGAGAAGACCGGTGAGAGATCTGATTGTGATGA-GAAGTCTAG 528 |||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||| Sbjct 444 AGTGGAGTTAGCGAAATCGAGAAGACCGGTGAGAAATCTGATTCTGATGATG-TGTCTAG 502 Query 529 AGAAAGTCTTGATCTAATGATGTCAAGATTCTTACCAGCTGCTAAAGCAATGGCTCTTCA 588 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 503 AGAAAGTCTTGATCTAATGATGTCGAGATTCTTACCAGCTGCTAAAGCAATGGCTCTTCA 562 Query 589 GACACATCAGAAACATCAATCTTCTTATAACTCTTCAGAGCAGAAGCTAATCACTCAGAA 648 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 563 GACACATCAGAAACATCAATCTTCTTATAACTCTTCAGAGCAGAAGCTAATCACTCAAAA 622 Query 649 CAGAGAAGCTCTCGTAGCTCGTCAAAGAAGTCAACTGGTTGCAGAACATGAACATTTCGC 708 ||||||||||||| || ||| ||||||||||| | || |||||||||||||||||||| Sbjct 623 CAGAGAAGCTCTCCTAATTCGCCAAAGAAGTCAGTTAGTCGCAGAACATGAACATTTCGC 682 Query 709 CATTGTTCAGAGTCTTTACGATGACTTAAACATtgatgatgatactgaagacgacga-ga 767 |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | Sbjct 683 CATTGTTCAGAGTCTTTATGATGATTTAAACATTGATGATGATACTGACGACGACGATG- 741 Query 768 atgatgatgatggtgatgatta-tggtcatgttgatCACAAGATCTACCCAGCTGAAGTT 826 |||||||| ||| ||| | || ||| ||| ||||||||||||||| ||| |||||| Sbjct 742 ATGATGATTATGATGA-CAATAGCGGTGATGGTGATCACAAGATCTATCCA---GAAGTT 797 Query 827 ACCAAGAAAGCTTGCGGATTCTTGCCAAGGCTTTGTGCGAAGAACTCATTCAAGTTTCTA 886 |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 798 ACCAAGAAAGTTTGTGGATTCTTGCCAAGGCTTTGTGCTAAGAACTCATTCAAGTTTCTA 857 Query 887 AACCCGGTTCCTTTGGATTCAGTATCAAACCGGTCTATGAAACATTCGGGTGATCAAACC 946 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 858 AACCCGGTTCCTTTGGATTCAGTATCAAACCGGTCTAAGAAACATTCGGGTGATCAAACC 917 Query 947 AGTTTACCAAACTGGTCAACTAGGCGTCTTTCCGGTTTTATCTCTCCGTACCGAACCTCT 1006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 918 GGTTTACCAAACTGGTCAACTAGGCGTCTTTCCGGTTTTATCTCTCCGTACCGAACTTCT 977 Query 1007 TGTTCGGATTCCGGTTTTCTCGGAACTCCCGAGAAACCAGAGAGCTTCAAAAGGCTAAAC 1066 |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| Sbjct 978 TGTTCGGATTCCGGTTTTATCGCAACTCCGGAGAAACCAGAGAGCTTCAAAAGGCTAAAC 1037 Query 1067 AGAGGAATAAGCAAGTCTCAAGAACTGTATCCAACAAGAACAAGAAGAGAGGTTCTTCCT 1126 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1038 AGAGGAATAAGCAAGTCTCAAGAACTGTATCCAACCAGAACAAGAAGAGAGGTTCTTCCT 1097 Query 1127 AATTACTCAAATTCTGGAGAGATCAAAATGTTTAGAAACTCGATCTCTACTCCTTCGAGG 1186 ||||| || ||||||||||| |||| |||||||||||||||| |||| |||||| ||||| Sbjct 1098 AATTATTCGAATTCTGGAGAAATCAGAATGTTTAGAAACTCGGTCTCCACTCCTACGAGG 1157 Query 1187 ATCCAACGGACCACAATTCACGATTCTAGGTTTCTTGTTGAGGAAGTAAACAGAAGAAGG 1246 |||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1158 ATCCAACGTACGACAATTCACGATTCGAGGTTTCTTGTGGAGGAAGTAAACAGAAGAAGG 1217 Query 1247 AACAACAAGTCAGGGAATCTTCAAC-AAACATCGTCGGAATATACACCTGCGCTTTCTCC 1305 ||| | | ||||||| |||||| | |||||||||||||||||||||| || |||||||| Sbjct 1218 AACGATAGGTCAGGGCATCTTC-TCAAAACATCGTCGGAATATACACCCGCACTTTCTCC 1276 Query 1306 TCCTCCGTTACCGGAAACTCCGTCTCGTTCCTGGCTCGGACGAACCCTCCTACCGCCGGT 1365 ||| ||||| || |||||||||||||| |||||||| ||| ||||||||||||||||| | Sbjct 1277 TCCGCCGTTGCCAGAAACTCCGTCTCGATCCTGGCTTGGAAGAACCCTCCTACCGCCGTT 1336 Query 1366 GAACCCGAGACCGTACGGCGTCGTTTTAGGTCAAGTTGGTATCAAGAAACTGAATCAAGA 1425 |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1337 AAACCCGAGACAACACGGTGTCGTTTTAGGTCAAGTTGGTAACAAGAAACTGAATCAAGA 1396 Query 1426 AGTTCTTGAATCTACGAAATGGGAAACGATCGTTAAAACATCGTATGTTCACAACGATCA 1485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1397 AGTTCTTGAATCTACGAAATGGGAAACGATCGTTAAAACATCGTATGTTCACAACGATCA 1456 Query 1486 CGCTCGTTATTCTCAGGAGCTGATTGTTTATCCATCTCGCCAGCAAAATACATAAAACCA 1545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 CGCTCGTTATTCTCAGGAGCTGATTGTTTATCCATCTCGCCAGCAAAATACATAAAACCA 1516 Query 1546 GACAAATTAC-T--TCTTGTTTTTACATTACAATT-AAGTTAATAAATAGTTTTAAGGTT 1601 |||||||||| | |||| |||||||| ||| || || ||||||||||||||||||||| Sbjct 1517 GACAAATTACATCATCTT-TTTTTACAGTACTATCGAA-TTAATAAATAGTTTTAAGGTT 1574 Query 1602 TGCCTCTTATTTTTCTTGTAGGCAACA-CA-AA-TGTACCCGAGATTGATTCTTTATGTT 1658 ||||||||||||||||||||||||||| || || ||||||||||||||||||||| |||| Sbjct 1575 TGCCTCTTATTTTTCTTGTAGGCAACAACATAAATGTACCCGAGATTGATTCTTTGTGTT 1634 Query 1659 TCAATATTTT-TGTGTGT-G-T---TATAATTGTGGCGTTTGTTTT 1698 ||||| |||| ||||||| | | ||||||||||||||||||||| Sbjct 1635 TCAATTTTTTGTGTGTGTAGCTCAATATAATTGTGGCGTTTGTTTT 1680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65629492135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5